LOC110486520 (LOC106607037)


Basic Information

Item Value
gene id LOC110486520
gene name LOC106607037
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44845151 ~ 44847008 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558186.2
GTGAATTTATCACGTAGAACAACATACCGGGAACGCAACCTTATGTATGGGTATAAAGTTTAGTGTTTTCTTATACAAGGTTGAAAAAGACAGTTCAAGACATTGGATCACGTCAATACTGCGGTCATTCATCTGTTGACAGCCTTCGTGGACCACTGATCGGTTCTACATCTTGGATTTTCCCTCACACTTTTAGAAGTTAAATAATTTTTAGTTTTGAACTTGGGTCTTTGCTGAAAAAAATATTTGCTGAAAAAGAAGACCGGTGCTTGCGTTGATGCGTAGCCTACATTTTGTTGACACCGTCATTTGTTGACCAATATCCTGAGACTGTTTAAACAACTGGTAAGCTCACTTTCCTACGACTTTATGTCTACAAAAATGGAGCAGCCTTTTTATCATGACGACTCTTTTCTCTCGGCATACGGCCACTCTGATGCTGCATTGCACGACTACAAACACCTAAAGCAGAATATGAATTTGAACATGACAGAGCCATATCGCAACCTCAAGTCTGACTTGTACCAGGTAGCGCACCAGGACGTCGGGTCACTGAAGCTTGCTTCCCCCGAACTAGAAAGGCTTATCATCCAAAACAGTAACGGTATAATTACTACTCCCACCCCAGGCCAGTACTTCTACAACCGGAGCATCACCGATGAGCAGGAGGGCTTTGCGGAGGGCTTCGTGAAAGCCCTGGATGAGCTCCACAAGATAAACCATATGCCCATAGCCCCGCCCAACGTGTCTATTGGAGCGGGTGGTGTGACGACCTGTTCGGCGGCGGCCTCTAGTGTCTTCGGCTCCTCCCTGCAGCCCGAGCCTCCAATCTACACAACACTGAACGCTTATTGCCCAAACACTAACCTCTCTTCCGCATCCAGTTACCCCAGTACCACCATCAACTACTTACCGCCGCTCCACCAGCAGAGCCATCACCAACAGACCTCGACGCACGCGTCACACCCCTTTCAGTACTCTCTACCTGGCGCTGGGGTCCATCCACAGCGCCTTGTGGCTTTCAAAGAAGAACCACAAACCGTCCCTGATCTACACAGCAGCGACGGTTCCCCGCCAATGTCCCCAATCGACATGGAAAACCAAGAGATAATCAAGGCCGAGCGGAAGAGGCTTAGAAACCGACTAGCAGCAACTAAATGCCGGCGCCGCAAACTGGAGCGCATCTCCCGACTGGAGGACAAGGTGAAAGTTCTGAAGTCGGACAATGCTGGGCTCTCCAATACGGCGACTGTGCTTCGTGAACAAGTCGCCCAACTCAAACAGAAAGTCCTAACACATGTAAGCAGCGGCTGTCAGCTGATGTTGACGAGCAAAATGGAGGCATTTTAAATGGAGAGGCGAGGGCATTACGCAGAGTAATTCATGATTTAGACGTGACAACACTGGAGGAATGTTCTACATGAACCGCACTGCAATAAGCCATATACCGGCAGGCTATTGTTAGTAATGACAATACGGTCGCAGGCTGTGTGTTGGCTACTCTCATTTCGGGTAAAAGACTGACAGAAATGGTACTTCCGGATGCTGGACACCGCACAAGGGACCATATCGTCCAAATACATGACAACAGGAACAGCATCTAGACGGAACATAGACACTAACACTGAGTGACTAGAAAAACAAACCAGAGACCACTTGATAGGTTGGTTTGCTTAGGTGTCAAATGGAAATGGTATTGTTTGTAATTTTGCATATCGTCATGCAATGCTGCATTCATTAAATGTGTAAGTTATTTTGTTTGCCAGGTTGATCCTGACAAATTAATATTTTGTCATGTTTACGATGTCTTTTTTTATTTGTGCAATGTATATTTAAGTAAAGTCTCTTTTCAAAACGA

Function

NR:

description
transcription factor jun-B-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0031101 fin regeneration biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09028 JUNB; transcription factor jun-B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558186.2 True 1858 mRNA 0.46 1 44845151 44847008

Neighbor

gene id symbol gene type direction distance location
LOC110486516 NA coding upstream 72827 44760430 ~ 44772324 (+)
LOC110486517 LOC106607033 coding upstream 85059 44753007 ~ 44760092 (+)
LOC110486515 LOC106586974 coding upstream 96518 44741769 ~ 44748633 (+)
LOC110486514 LOC106601335 coding upstream 107299 44731698 ~ 44737852 (+)
LOC110486511 LOC100380669 coding upstream 113786 44699535 ~ 44731365 (+)
LOC110485188 LOC106601310 coding downstream 31706 44878675 ~ 44943951 (+)
LOC110486523 LOC106607042 coding downstream 97441 44944449 ~ 44956000 (+)
LOC110486526 smarca4 coding downstream 120681 44967368 ~ 44996127 (+)
LOC100135849 LOC106607045 coding downstream 154550 45001558 ~ 45015370 (+)
LOC110486527 LOC100286593 coding downstream 172299 45019307 ~ 45025593 (+)
G1178448 NA non-coding upstream 4981 44839948 ~ 44840170 (+)
G1178445 NA non-coding upstream 7901 44837017 ~ 44837250 (+)
G1178444 NA non-coding upstream 8239 44836630 ~ 44836912 (+)
G1178411 NA non-coding upstream 59540 44785403 ~ 44785611 (+)
G1178410 NA non-coding upstream 60721 44783178 ~ 44784430 (+)
G1178491 NA non-coding downstream 44282 44891290 ~ 44891571 (+)
G1178499 NA non-coding downstream 53323 44900331 ~ 44900634 (+)
G1178500 NA non-coding downstream 53889 44900897 ~ 44901230 (+)
G1178502 NA non-coding downstream 56077 44903085 ~ 44903721 (+)
G1178363 NA other upstream 176692 44668068 ~ 44668459 (+)
LOC110486491 LOC106607082 other upstream 639581 44174050 ~ 44211083 (+)
G1177750 NA other upstream 723229 44118878 ~ 44121922 (+)
LOC110486465 bglap other upstream 1437209 43406158 ~ 43407943 (+)
LOC110486464 mgp other upstream 1442871 43397744 ~ 43402308 (+)
G1178425 NA other downstream 12861 44859869 ~ 44864183 (+)
G1179156 NA other downstream 465322 45312330 ~ 45313033 (+)
G1179362 NA other downstream 615580 45462588 ~ 45462943 (+)

Expression


Co-expression Network