tdx (tdx)


Basic Information

Item Value
gene id tdx
gene name tdx
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44850578 ~ 44852940 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001165188.1
gggtttagaaactctgtgctaTACATTTTCCACGATCTGTTGCCACTTGATTGTGCACTTTCTTTGACACAAACTCAGACACCTGTACTATTTCTTATTACTTGTGTGTCGGTGACCTAAGAAAGTAGCAATAGCATGTGTACCTCTACACTCTACTGACAGTCAAACTGACACTATCAAACTGCTGACAGACTAGGTGGAGTAGACTAGACTGTAGAGAGGGGTAATTGATCAGACAGCCTAAGCTAGTTTGGTTGTTGGCTGTGTGAACTGCAGTGTTATTTTATTAGGCTATTGTAGACTACACGTTTTATCTTACAATGTTTGGAATGCAGTAGATTGATAGAAGAACAGTTTAATGTTTAATACTAGCTTTAACTCTACCAAACTCATATCTGAAGTTCATGTTTCATGCGATGTCcaggtctctctccccctcctgtgCAGGATCAAcacagagaggaaagacagTCTGGGCCCTATGAAGATCCCTCCGCTGGCTGACCCCACCCAGGCCATCTCCAGGGACTACGGAGtgctgaaggaggatgagggCATAGCCTACAGAGGTCTGTTTGTGATTGATGACAAGGGCATCCCGAGACAGATCCCCATCAACGACCTGCCAGTGGGGTGCTCTGTGGATGAGACACTGCACCTGGTGCAGGCCTTCCAGCACACTGACAAGtttggagaggTGTGCCCAGCAGGATGGAGACCAGGGAGAGACACCATCGTCCCAAACGTCCAGAAGAGCAAGGAGTTTTTCTCCAAACAGAACTGATCCATCCACACCTCCTTAGAGGTGCTACGTCTATACAGGGTACTAACTGAGCACTTACTGTTGTTAGCTGGATCGCTGACTGACTGAGTCTGCTGATCGCATTGATTCTGTGTAAACTACACTGTCAGTGGGGATGTGTTTTGTGAGACTTCTTGAAAATGAtatattatttgtgtattaggcTTGATGTTGGTTCCATCATTGGGCTTATTTTACTGCTGTTGTCTAgtgatttttaatttttaaatgatctaatttttacttaacacttatttttttaattaaaactgcattgttggttaagggcttgtaattaagcatttcactgtaatgtcgtATTCTGTGCAAGTGACaactaacatttgatttgattacaattCTAACAGTGCTATGTGAGTCTTTTGTTGATGAACTTGAatgttaataaaaaaaaacagaatttaTAGCT
>TU1344439
gcgcatgtgcatgCCGTCAATTCAAAGCCACACCTtggatataaagttgtttttgacgaaaATGTAAACGTGTCAGTTTGACACTTTCACGAAGTTCAGgtctctctccccctcctgtgCAGGATCAAcacagagaggaaagacaggTCTGGGCCCTATGAAGATCCCTCCGCTGGCTGACCCCACCCAGGCCATCTCCAGGGACTACGGAGtgctgaaggaggatgagggCATAGCCTACAGTGTGCCCAGCAGGATGGAGACCAGGGAGAGACACCATCGTCCCAAACGTCCAGAAGAGCAAGGAGTTTTTCTCCAAACAGAACTGATCCATCCACACCTCCTTAGAGGTGCTACGTCTATACAGGGTACTAACTGAGCACTTACTGTTGTTAGCTGGATCGCTGACTGACTGAGTCTGCTGATCGCATTGATTCTGTGTAAACTACACTGTCAGTGGGGATGTGTTTTGTGAGACTTCTTGAAAATGAtatattatttgtgtattaggcTTGATGTTGGTTCCATCATTGGGCTTATTTTACTGCTGTTGTCTAgtgatttttaatttttaaatgatctaatttttacttaacacttatttttttaattaaaactgcattgttggttaagggcttgtaattaagcatttcactgtaatgtcgtATTCTGTGCAAGTGACaactaacatttgatttgattacaattCTAAC
>TU1344443
gcgcatgtgcatgCCGTCAATTCAAAGCCACACCTtggatataaagttgtttttgacgaaaATGTAAACGTGTCAGTTTGACACTTTCACGAAGTTCAGgtctctctccccctcctgtgCAGGATCAAcacagagaggaaagacaggTCTGGGCCCTATGAAGATCCCTCCGCTGGCTGACCCCACCCAGGCCATCTCCAGGGACTACGGAGtgctgaaggaggatgagggCATAGCCTACAGTGTGCCCAGCAGGATGGAGACCAGGGAGAGACACCATCGTCCCAAACGTCCAGAAGAGCAAGGAGTTTTTCTCCAAACAGAACTGATCCATCCACACCTCCTTAGAGGTGCTACGTCTATACAGGGTACTAACTGAGCACTTACTGTTGTTAGCTGGATCGCTGACTGACTGAGTCTGCTGATCGCATTGATTCTGTGTAAACTACACTGTCAGTGGGGATGTGTTTTGTGAGACTTCTTGAAAATGAtatattatttgtgtattaggcTTGATGTTGGTTCCATCATTGGGCTTATTTTACTGCTGTTGTCTAgtgatttttaatttttaaatgatctaatttttacttaacacttatttttttaattaaaactgcattgttggttaagg
>TU1344441
gcgcatgtgcatgCCGTCAATTCAAAGCCACACCTtggatataaagttgtttttgacgaaaATGTAAACGTGTCAGTTTGACACTTTCACGAAGTTCAGgtctctctccccctcctgtgCAGGATCAAcacagagaggaaagacaggTCTGGGCCCTATGAAGATCCCTCCGCTGGCTGACCCCACCCAGGCCATCTCCAGGGACTACGGAGtgctgaaggaggatgagggCATAGCCTACAGTGTGCCCAGCAGGATGGAGACCAGGGAGAGACACCATCGTCCCAAACGTCCAGAAGAGCAAGGAGTTTTTCTCCAAACAGAACTGATCCATCCACACCTCCTTAGAGGTGCTACGTCTATACAGGGTACTAACTGAGCACTTACTGTTGTTAGCTGGATCGCTGACTGACTGAGTCTGCTGATCGCATTGATTCTGTGTAAACTACACTGTCAGTGGGGATGTGTTTTGTGAGACTTCTTGAAAATGAtatattatttgtgtattaggcTTGATGTTGGTTCCATCATTGGGCTTATTTTACTGCTGTTGTCTAg

Function

NR:

description
peroxiredoxin-2-like isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016209 antioxidant activity molecular_function
GO:0051920 peroxiredoxin activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001165188.1 False 1232 mRNA 0.42 4 44850578 44852673
TU1344439 False 713 lncRNA 0.43 3 44850642 44852940
TU1344443 False 634 lncRNA 0.44 3 44850721 44852940
TU1344441 True 558 lncRNA 0.48 3 44850797 44852940

Neighbor

gene id symbol gene type direction distance location
hook2 LOC106607036 coding downstream 47351 44786935 ~ 44803227 (-)
LOC110486518 LOC106601332 coding downstream 75944 44772602 ~ 44774634 (-)
LOC110486512 LOC106607029 coding downstream 168674 44677879 ~ 44681904 (-)
si:ch211-106h11.3 LOC106601163 coding downstream 177627 44665763 ~ 44672951 (-)
LOC118938082 LOC106607008 coding downstream 201546 44644651 ~ 44649032 (-)
LOC110486521 rbp coding upstream 4264 44856937 ~ 44864226 (-)
LOC110486524 LOC106607044 coding upstream 102901 44955574 ~ 44959660 (-)
LOC110486528 LOC106607047 coding upstream 177091 45029764 ~ 45034405 (-)
il-8 il-8 coding upstream 232596 45085269 ~ 45087130 (-)
LOC110486532 LOC106607051 coding upstream 280356 45133029 ~ 45135645 (-)
G1178873 NA non-coding downstream 2245 44848043 ~ 44848333 (-)
G1178862 NA non-coding downstream 3572 44846747 ~ 44847006 (-)
G1178863 NA non-coding downstream 12763 44837580 ~ 44837815 (-)
G1178867 NA non-coding downstream 15444 44834811 ~ 44835134 (-)
G1178833 NA non-coding downstream 19069 44786036 ~ 44831509 (-)
G1178878 NA non-coding upstream 937 44853610 ~ 44853844 (-)
G1178882 NA non-coding upstream 11777 44864450 ~ 44864801 (-)
G1178885 NA non-coding upstream 16126 44868799 ~ 44869049 (-)
G1178891 NA non-coding upstream 25255 44877928 ~ 44878129 (-)
G1178913 NA non-coding upstream 52630 44905303 ~ 44905532 (-)
G1178765 LOC100380669 other downstream 119227 44725639 ~ 44731351 (-)
G1178763 LOC106607027 other downstream 197110 44653072 ~ 44653468 (-)
LOC110485184 LOC106601341 other downstream 305094 44467268 ~ 44545484 (-)
G1178286 LOC106607023 other downstream 320047 44513436 ~ 44530531 (-)
G1178281 NA other downstream 387352 44462954 ~ 44463226 (-)
G1178958 LOC106607010 other upstream 116537 44969210 ~ 44981200 (-)
G1178982 LOC106607046 other upstream 173842 45026515 ~ 45028613 (-)
G1178996 NA other upstream 198903 45051576 ~ 45052024 (-)
zgc:171844 LOC106607059 other upstream 330787 45182660 ~ 45193315 (-)

Expression


Co-expression Network