LOC110486521 (rbp)


Basic Information

Item Value
gene id LOC110486521
gene name rbp
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44856937 ~ 44864226 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558188.2
ATCGTGCTGCCCCTGGGAAGAAGAGATCATAACAAGCATTCAGCCCGGAGGAAGAGCTGCGTAGAGTGGTGCTGATTCGACGACGATTCCAAAGCTGAGGAGACACGTCGCACAAGACCAAGCAGAATCAAAAGGAAAACGGTTTCTCCCACCGACAGGTCCTGATTATAGCCGGTTAGCTGAACGCAGGTTGAAGAAATGGCTATCACGTCAAACTCCCTGCCGTTGGTCTGTGCATATTTAGCGGCTACCCTGATTGGTCGCATTTTGTGTTTGGAGGGTGCGTGTCTACAGGACGGTAGACAGAAGGCCACGCCCAGCCAGGAACCTCACCTGAAAGAGTGCACAATCTATgctgagaATGCATGTTGTTCAGGGGATGACATCCAGGATCTTAATCCCATGACCAGTGAGAAGAACAGCCCCTGGGACAAGTGTGGGAAACTGAGCCCGAAGTGTGAGGACTTCCTGAAGCGTGTGACCTGTTTCTACCGTTGTTCCCCTGATGCAGCCCGCTGGCCACACTCTCACCTCCAGTCCTCCATGCAGGCCGTGCCACTGTGCCACAGCTTCTGCCGTGACTGGTATGAGGCCTGCAGGATGGACATGACATGTGCTCGTAACTGGGCCAGAGACCCCAGAGGACAGAACTGTACTGGGAACTGTGTGCCGTATCAGCAGATGTACCAGCACGGCCGGGACCTGTGTGAGAGCCTGTGGGGGGACGCCTTCATGAcggtggaggatgaggaggaggaacggGAGGGGGGTGAGGGTATTAGCAATGGTAATGGTGGACGTCCCTGTGGATGCCTGACCCTCAGCCCCTCGGACAGGGAGGTGATCGCTGCCCTCAGGGCCCTGGAGGAAGACCCAGAGGAGCTGGACACCACCAAGAGTGGCTTGCCTCAGTATCGTGCCCCCTGCCACACGCAGCCCCAGACCAAGCCTGCCACACTGCCCCTGCAGGCGCGGAGGAGCAACGGCAACATTGTGATGCGGAAACGCTCGGTCGTGGTGGATGATGTGGAGGGTAGTGGGAGTGGGCTGTAGATGAACTGACAGAATCTGATCTCTGAATCTGTAGCTCTGTCCCCAAGCTGGGGTTGTCATATCTTGCTCCTATAACTAACCTTACCTCACATACTGTACCTCTCATGACACACCATTATAACCCATCAATCAAATGTTGCTTAGAGACGCTCCATGTTTTGAAGTAATACCAAACATATAAATCATTATGACATGACATGCCTTTAACACTGTGTAAATAATGTACGAATAGTGACATTGACCGTAACATTATTGTGAAAGGTAAAACAATCAACAGCTAACATCAAAGTGTATGACATCATGTTGTATTACAGTCTGTTGTTACATGGTACTTGGCCCAGGGACTGCAGTTGAGAATTAGCCGGCTGACTAAAACTTTTATACAGTAGTAATGTTGATTAATGTCCCCTGTCCCTGTAAAAGTAAATGTAATAAAGTAAAGTAGTTTCTAAAACAGGTGACACCATTCATGATCGCCATCAATGTTTGGCATGTAATTGTCAGTCATGTAAGCTCATTATTAACATATGTAGTCTTGCAGCTACATTAGTAGGCCTACAAATGAAAATATCTGTCATCTTGTGAGGTGCCTGGGACTACCTCGGTGCATATCATACTGTAGAGTTGTGTTTACCCATCAGTGGACTGCAGTAGTTTCTAAACTGTATTGTGTAACTATACCAGACTAGGCATAAAGGAGATATATGTACGTATCCATACTGAAGCGTCCAAAATTCCTCTATTCCTCAATCCTAAACACCTTTTTTTAGACATACCTGTACAACTGTCAACATGCTTGGCATATTTAACTGTCGTGATATAACGTAATGTACTACTGTTTTCTTGTCATGAAATGTttgagagtggaggagggaggtagggtgTTTGTGGTGCACAGCCACATCATTAGAGTGGTTGCCATCCTGCAACCATAGGAGTCAGTCAGCTGTTAAAAATGATGAAGTATTTTATATAGCTGGAGGAAGTCTTGAATTTCAGAAAGAGAATCTGCGCAAAGGACAGACTTAGACTGCTGATGTAGAAACATGACTCATGCCAGTAAGGCTTTTGTGTTAGTATTGATAATGCATCGGAACTCGATTCAGGCAATGTCATTCAAAATGCTGTGAAGTAGAATTAGAGCCAAACTCTatagaatgtctatagaatggaGGACCAAAAGGGAACCTGTTTGTCTGAGTGTGACATGAATCCCTATTTGGGGTTCTTTTGTTTCTTGACATCCTCAATAAACACTGGATTTCAAAATCA

Function

symbol description
rbp Involved in cytoskeletal matrix organization at active zone; neuromuscular synaptic transmission; and presynaptic active zone organization. Located in cytoskeleton of presynaptic active zone. Is expressed in adult head and embryonic/larval neuromuscular junction. Orthologous to several human genes including RIMBP2 (RIMS binding protein 2) and TSPOAP1 (TSPO associated protein 1).

NR:

description
riboflavin-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558188.2 True 2325 mRNA 0.47 6 44856937 44864226

Neighbor

gene id symbol gene type direction distance location
tdx tdx coding downstream 4264 44850578 ~ 44852940 (-)
hook2 LOC106607036 coding downstream 53710 44786935 ~ 44803227 (-)
LOC110486518 LOC106601332 coding downstream 82303 44772602 ~ 44774634 (-)
LOC110486512 LOC106607029 coding downstream 175033 44677879 ~ 44681904 (-)
si:ch211-106h11.3 LOC106601163 coding downstream 183986 44665763 ~ 44672951 (-)
LOC110486524 LOC106607044 coding upstream 91348 44955574 ~ 44959660 (-)
LOC110486528 LOC106607047 coding upstream 165538 45029764 ~ 45034405 (-)
il-8 il-8 coding upstream 221043 45085269 ~ 45087130 (-)
LOC110486532 LOC106607051 coding upstream 268803 45133029 ~ 45135645 (-)
LOC110486530 LOC106601319 coding upstream 272530 45136756 ~ 45143108 (-)
G1178878 NA non-coding downstream 3093 44853610 ~ 44853844 (-)
G1178873 NA non-coding downstream 8604 44848043 ~ 44848333 (-)
G1178862 NA non-coding downstream 9931 44846747 ~ 44847006 (-)
G1178863 NA non-coding downstream 19122 44837580 ~ 44837815 (-)
G1178882 NA non-coding upstream 224 44864450 ~ 44864801 (-)
G1178885 NA non-coding upstream 4573 44868799 ~ 44869049 (-)
G1178891 NA non-coding upstream 13702 44877928 ~ 44878129 (-)
G1178913 NA non-coding upstream 41077 44905303 ~ 44905532 (-)
G1178919 NA non-coding upstream 46999 44911225 ~ 44911569 (-)
G1178765 LOC100380669 other downstream 125586 44725639 ~ 44731351 (-)
G1178763 LOC106607027 other downstream 203469 44653072 ~ 44653468 (-)
LOC110485184 LOC106601341 other downstream 311453 44467268 ~ 44545484 (-)
G1178286 LOC106607023 other downstream 326406 44513436 ~ 44530531 (-)
G1178281 NA other downstream 393711 44462954 ~ 44463226 (-)
G1178958 LOC106607010 other upstream 104984 44969210 ~ 44981200 (-)
G1178982 LOC106607046 other upstream 162289 45026515 ~ 45028613 (-)
G1178996 NA other upstream 187350 45051576 ~ 45052024 (-)
zgc:171844 LOC106607059 other upstream 319234 45182660 ~ 45193315 (-)

Expression


Co-expression Network