Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110485188 |
| gene name | LOC106601310 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 44878675 ~ 44943951 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: microtubule-associated serine/threonine-protein kinase 1-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036941242.1 | False | 7784 | mRNA | 0.52 | 26 | 44878714 | 44943951 |
| TU1343971 | False | 984 | lncRNA | 0.48 | 2 | 44878675 | 44890333 |
| TU1343969 | True | 1714 | TUCP | 0.44 | 4 | 44920363 | 44926317 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110486520 | LOC106607037 | coding | upstream | 31706 | 44845151 ~ 44847008 (+) |
| LOC110486516 | NA | coding | upstream | 106390 | 44760430 ~ 44772324 (+) |
| LOC110486517 | LOC106607033 | coding | upstream | 118622 | 44753007 ~ 44760092 (+) |
| LOC110486515 | LOC106586974 | coding | upstream | 130081 | 44741769 ~ 44748633 (+) |
| LOC110486514 | LOC106601335 | coding | upstream | 140862 | 44731698 ~ 44737852 (+) |
| LOC110486523 | LOC106607042 | coding | downstream | 498 | 44944449 ~ 44956000 (+) |
| LOC110486526 | smarca4 | coding | downstream | 23738 | 44967368 ~ 44996127 (+) |
| LOC100135849 | LOC106607045 | coding | downstream | 57607 | 45001558 ~ 45015370 (+) |
| LOC110486527 | LOC100286593 | coding | downstream | 75356 | 45019307 ~ 45025593 (+) |
| LOC118938604 | NA | coding | downstream | 79246 | 45023197 ~ 45023294 (+) |
| G1178448 | NA | non-coding | upstream | 38544 | 44839948 ~ 44840170 (+) |
| G1178445 | NA | non-coding | upstream | 41464 | 44837017 ~ 44837250 (+) |
| G1178444 | NA | non-coding | upstream | 41802 | 44836630 ~ 44836912 (+) |
| G1178411 | NA | non-coding | upstream | 93103 | 44785403 ~ 44785611 (+) |
| G1178410 | NA | non-coding | upstream | 94284 | 44783178 ~ 44784430 (+) |
| G1178457 | yo84 | non-coding | downstream | 16138 | 44960089 ~ 44961764 (+) |
| G1178465 | NA | non-coding | downstream | 20070 | 44964021 ~ 44965492 (+) |
| G1178536 | NA | non-coding | downstream | 73726 | 45017677 ~ 45017927 (+) |
| G1178541 | NA | non-coding | downstream | 91724 | 45035675 ~ 45035971 (+) |
| G1178549 | NA | non-coding | downstream | 101000 | 45044951 ~ 45045202 (+) |
| G1178425 | NA | other | upstream | 14531 | 44859869 ~ 44864183 (+) |
| G1178363 | NA | other | upstream | 210255 | 44668068 ~ 44668459 (+) |
| LOC110486491 | LOC106607082 | other | upstream | 673144 | 44174050 ~ 44211083 (+) |
| G1177750 | NA | other | upstream | 756792 | 44118878 ~ 44121922 (+) |
| LOC110486465 | bglap | other | upstream | 1470772 | 43406158 ~ 43407943 (+) |
| G1179156 | NA | other | downstream | 368379 | 45312330 ~ 45313033 (+) |
| G1179362 | NA | other | downstream | 518637 | 45462588 ~ 45462943 (+) |
| LOC110485192 | LOC106601391 | other | downstream | 585485 | 45529398 ~ 45554103 (+) |
| LOC118936304 | LOC106601427 | other | downstream | 1230077 | 46173911 ~ 46176562 (+) |
| G1178491 | NA | non-coding | downstream | 957 | 44891290 ~ 44891571 (+) |
| G1178499 | NA | non-coding | downstream | 9998 | 44900331 ~ 44900634 (+) |
| G1178500 | NA | non-coding | downstream | 10564 | 44900897 ~ 44901230 (+) |
| G1178502 | NA | non-coding | downstream | 12752 | 44903085 ~ 44903721 (+) |
| G1178508 | NA | non-coding | downstream | 22452 | 44912785 ~ 44912993 (+) |
| LOC110485188 | LOC106601310 | other | downstream | 30030 | 44878675 ~ 44943951 (+) |
| G1178511 | NA | non-coding | upstream | 5523 | 44914608 ~ 44914840 (+) |
