Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110486526 |
| gene name | smarca4 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 44967368 ~ 44996127 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| smarca4 | Enables several functions, including DNA polymerase binding activity; RNA polymerase II-specific DNA-binding transcription factor binding activity; and lysine-acetylated histone binding activity. Contributes to RNA polymerase I core promoter sequence-specific DNA binding activity. Involved in several processes, including chromatin organization; regulation of signal transduction; and regulation of transcription, DNA-templated. Located in chromatin and nucleolus. Part of SWI/SNF complex and npBAF complex. Implicated in Coffin-Siris syndrome 4; hepatocellular carcinoma; lung non-small cell carcinoma; and rhabdoid cancer. Biomarker of prostate cancer. |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036941248.1 | False | 5729 | mRNA | 0.57 | 31 | 44967689 | 44996127 |
| XM_036941249.1 | False | 5625 | mRNA | 0.57 | 30 | 44967694 | 44996127 |
| XR_005035565.1 | False | 5811 | mRNA | 0.57 | 32 | 44975614 | 44995670 |
| XM_021558192.2 | False | 6468 | mRNA | 0.56 | 31 | 44975614 | 44996127 |
| XM_021558193.2 | False | 6445 | mRNA | 0.56 | 31 | 44975614 | 44996127 |
| XM_021558194.2 | False | 6465 | mRNA | 0.56 | 31 | 44975614 | 44996127 |
| XM_021558195.2 | False | 6465 | mRNA | 0.56 | 31 | 44975614 | 44996127 |
| XM_021558197.2 | False | 6462 | mRNA | 0.56 | 31 | 44975614 | 44996127 |
| XR_005035566.1 | False | 6318 | mRNA | 0.56 | 32 | 44975614 | 44996127 |
| TU1343973 | True | 1191 | TUCP | 0.54 | 3 | 44967368 | 44969719 |
44,960,000
44,964,000
44,968,000
44,972,000
44,976,000
44,980,000
44,984,000
44,988,000
44,992,000
44,996,000
45,000,000
45,004,000
45,008,000
45,012,000
45,016,000
45,020,000
NC_048577.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110486523 | LOC106607042 | coding | upstream | 11689 | 44944449 ~ 44956000 (+) |
| LOC110485188 | LOC106601310 | coding | upstream | 23738 | 44878675 ~ 44943951 (+) |
| LOC110486520 | LOC106607037 | coding | upstream | 120681 | 44845151 ~ 44847008 (+) |
| LOC110486516 | NA | coding | upstream | 195365 | 44760430 ~ 44772324 (+) |
| LOC110486517 | LOC106607033 | coding | upstream | 207597 | 44753007 ~ 44760092 (+) |
| LOC100135849 | LOC106607045 | coding | downstream | 5431 | 45001558 ~ 45015370 (+) |
| LOC110486527 | LOC100286593 | coding | downstream | 23180 | 45019307 ~ 45025593 (+) |
| LOC118938604 | NA | coding | downstream | 27070 | 45023197 ~ 45023294 (+) |
| LOC110486529 | LOC106607046 | coding | downstream | 30062 | 45026189 ~ 45028620 (+) |
| zgc:162612 | LOC106607050 | coding | downstream | 115516 | 45111643 ~ 45115147 (+) |
| G1178465 | NA | non-coding | upstream | 2197 | 44964021 ~ 44965492 (+) |
| G1178457 | yo84 | non-coding | upstream | 5925 | 44960089 ~ 44961764 (+) |
| G1178511 | NA | non-coding | upstream | 52849 | 44914608 ~ 44914840 (+) |
| G1178508 | NA | non-coding | upstream | 54696 | 44912785 ~ 44912993 (+) |
| G1178502 | NA | non-coding | upstream | 63968 | 44903085 ~ 44903721 (+) |
| G1178536 | NA | non-coding | downstream | 21550 | 45017677 ~ 45017927 (+) |
| G1178541 | NA | non-coding | downstream | 39548 | 45035675 ~ 45035971 (+) |
| G1178549 | NA | non-coding | downstream | 48824 | 45044951 ~ 45045202 (+) |
| G1178554 | NA | non-coding | downstream | 55037 | 45051164 ~ 45051364 (+) |
| G1178555 | NA | non-coding | downstream | 70271 | 45066398 ~ 45101821 (+) |
| G1178425 | NA | other | upstream | 103506 | 44859869 ~ 44864183 (+) |
| G1178363 | NA | other | upstream | 299230 | 44668068 ~ 44668459 (+) |
| LOC110486491 | LOC106607082 | other | upstream | 762119 | 44174050 ~ 44211083 (+) |
| G1177750 | NA | other | upstream | 845767 | 44118878 ~ 44121922 (+) |
| G1179156 | NA | other | downstream | 316203 | 45312330 ~ 45313033 (+) |
| G1179362 | NA | other | downstream | 466461 | 45462588 ~ 45462943 (+) |
| LOC110485192 | LOC106601391 | other | downstream | 533309 | 45529398 ~ 45554103 (+) |
| LOC118936304 | LOC106601427 | other | downstream | 1177901 | 46173911 ~ 46176562 (+) |
| G1180047 | NA | other | downstream | 1243017 | 46239144 ~ 46273601 (+) |
