LOC100135849 (LOC106607045)


Basic Information

Item Value
gene id LOC100135849
gene name LOC106607045
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45001558 ~ 45015370 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558198.2
TTGCCAAACACGATTACACTGTCAGGAGCATCCTTGCCTAACCTCTCGTCCCAAGCGCATCTTAATCCAGAACATAAGAGCAGAGGAACTGAATAGCTTGGAAGCAGTGACTTTAAAATAAAACAATCGTTTTAACTTGACTATGGGGCGGCTGCTGTGCGTGCTGTTGGTGTTCCTGGCTTGCTGTGTTGTCCAAACAAacacagagacagtatgcGGGATCGGGCAGTTCCTGTGTGGGAACGGGAAGTGCATTACGCTGAGATGGGTGTGTGATGACACAGATGATTGTGGAGATGGAACTGACGAGCTCCCCGGAACCTGCTCGGCCAGAACATGCAGAACCACAGAGTTCAGCTGTGGTGGACATCTgaaccagtgtgttcccagtaCCTGGCTCTGTGATGGCAAAGCAGACTGTGAGAATGGAGTTGATGAGGAGAGCTGTGCGCCCAAGCACTGCACAGATAACAAATTCCACTGCAGTAACGGCCAGTGTGTGTCGGCCTCCTTTGTGTGTGATGAGGAGTTGGACTGTGATGACGGGAGCGACGAGGATTCCTGCCCACCCACCACCTGTAGCTCCACCTCCTTCCAGTGCAACAACTCTGTATGTGTGCCGCGCCTGTGGGCCTGCGACGGAGACGCTGACTGCTCGGATGGCTCTGACGAGTGGCCCCAGAACTGTGGGACGCGAGCCCCTGGGGGTGCCCCCAAGCCCTGCTCCCTTCGGGAGTTCCAATGTGGCAGCGGGGAGTGTATCCACAGCAGCTGGAAATGTGATGGAGGATTCGACTGCCTGGATCGCTCTGACGAGACCAACTGTAgCCACATCACCTGCCGCCCCGATGAGTTCCAATGCGGTGATGGCACCTGTATCCACGGCGGTCGCCAATGTAACCGCCAGTACGACTGCAGAGACTTGAGTGATGAAATGGGCTGTGTCAATGtgaGCCATTGCAAGGGTCCCACCAGGTTTAAGTGCCGTAGTGGGGAGTGCATCAGCATGGAGAAGGTGTGTGACAAGCAGCGTGACTGCAGGGACTGGTCAGATGAGCCTCTCAGAGAGTGTGATTCCAACGAGTGCCTGTACAACAATGGCGGCTGCTCACACATCTGCAATGACCTGAAGTTCGGCTATGAGTGCCAATGCCCCACCGGCTACTACCTGACAGACAAGAAACGCTGTGAAGATATCGATGAGTGTGCCAACCCAGACATCTGCAGTCAGATCTGTGTCAATAATATGGGCAGCTACAAGTGCGAGTGTGAGGAGGGCTACCAGGTCGACCCAGCGACCAAAGCCTGCAAGGCCATCGGCACTGTAGCCTATCTGTTCTTCACCAATCGCCATGAGGTGAGGAAGATGACACTGGACAAGAGTGAGTACACGCGTGTCATCCCCCACCTGAAGAATGCAGTGGCTCTGGACATGGACATGGTTGCCAAGGAGATTTACTGGTCTGACCTCTCCCAGAAGAAGATCTACAGCACATCAATGGACTTGGCTGCAGACACAGCGCAACACAAAGTTGTGATTGACAGCGACATCGAAGGTCCGGAGGGCATCGCCTTTGACTGGGTCCACGGCAACATCTACTGGACCGACAGTATCCGCAGCAGCATCTCTGTGTCAACCGCCAACGGGAGCCGTCGCAAGACTCTCTTCCAGAATGACCTGGCCAAGCCCCGCGCTATTGTGGTCGACCCCCACAGCAATTTCATGTACTGGACTGACTGGGGAACTCCAGCCAAGATTGAGAAGGGAGGTCTGAATGGAGGAGACCGTGCTGCTCTGGTCACAGACAACATTGTGTGGCCCAATGGAATCACCCTTGACCTGCTGAACCAGCGGCTGTACTGGGTGGACTCCAAGCTGCACACCCTCTCCAGTATCGACGTCCAGGGTGGCGGCCGAAGGACACTCATTATAGATGAACACAGGCTAGCCCATCCCCTAGGCATCACTGTGTTTGAGGAAAGAGTGTTTTGGACAGATGTCAGCAACAATGCCATTCTGAGTGCCAACCGTGTGACAGGCAGGGACATCAAGCCTGTGGCAGAGCACCTGGTATCCCCAGAGGACATTGTGTTGtaccacaacctcaaacagccaACTGGCAGGGACTGGTGCAAGGTGGCCAACGGAGGCTGTGAGTTCATGTGTCTGGCAGCCCCCCAGGTGGGCATACATTCCCCCAAGTACACCTGTGCATGCCCTGACAACATGCTGCTGGCCAAAGACATGAGGAAATGTGTACCAGCTGCACCAACACCTGCAACTCCAGTCAAGCCCATTGTTCCCCCACCCAACCCCCCACCGGCACCCGCCCACACCTCCCCTGCACCTCCAGCCCGCGCCACCACTAAGGCCCGCATCATCGCTACCACAGTTACGCCTGCGCCTCCCCGCACTACCAAGCCTGTGCCACGCAACCCCCAGCCTGCCCAGCCAGATACACCCAGGATCCCCCAGGCCCAGACTACCACAGTGCCTCAAGTCACCACTAAGGACATCCGCCATGAATTTGCTGCTATACCCACAGCCCCTTCAACCCCTGCAGCTTTATACATCGCGCTGCCTATAGccaTTGTGTGTCTGGTGGCCTTTGGTGCCGTGCTGCTGTGGAGGAACTACAGGCTGAAGAACACCAACACCATTCACTTTGAAAACCCAGTCTACCAGAAGACCACTGAAGACCAGGTGCACATATGCAGGAGCCACAGTCCAGACGGCTACTCCTACCCACCGAGACAGATTGTGAGTCTTGATGATGAGGCTTGACCGTAGTGCTGCCGTTCCCTGCCAACACAAACACTttaagaggagagagcagaagagTAAGAGAGACATTTTATATAAGCTACCTGGACAATCTTGTTTTTTTTACCTCACAACCTCAAAGACATGAGAAGGCAGAGAAAGTGTCATACCGCTGACCAAACCACTGTATGCTCaaagacaaagaaagaaagaaaaggaggAAGATTTCTCAGTCATGTGTCTTTCTTGCCCATTTGTGTACAATCCAGAGCCATAAGAGACCACCAACTCATCTCCACCAAGCTGGAGTTTTATTGGCCAATTCTACACCGTAGTATTTTTCTCAGACGATTTGTCTGAACTGTGAATTGTTTAACAAATGCAAGACTGTTCAGACGCTGAACCCCATTATGAAAGAACAGTAATGTAATTGTAATATTTGAgtgttttgtgtttgtgaagAAGTGCCCTTGATATGAGGTGACTGCAACTTTATTTAACACCACTTACAATTGAGAAAAATCGCTCTAGAATTAGAATTCAGAAATGAGGTATTGTAAATAACGTAGGTATTTATTTGACTTATTTCTGAGACTGACAAAATGTTGAGAAATAATGAGCGGATCATATCTTTTACTATGTCTAGACTCATTTCTTTGTTCCTGAATTGTTTTAATATCCAAATCTGATATCTGATAACACCTGAGCCACCTGTTGAAATGAAACCCTTTGATAGTGAATGTCGTCTTGAATTCTATAAATGAGCCAATTTTACCTCTGTATCATCAACAGACAGGGACAAAGTCAAAGTCTTTTTATATCAATCGTCCACATTGCCTCACTAGTGGTGCACTATCCAAATGGACGGTTAAAACACACTGACACTTATACTGTATTTCTAACACTATTGCTGTGGGAACATTCAATTTCCCTAATATGGTGTTTAATTGCAAGCCAAGACAGTAGATTTACGACAGTCTGTCTGAGATGTATCTTTCTCATTTTCTCCATTGTCTTACTTTCTGTCATTCACTCCTTCTCAAGCTTCCCTTTCTTTCAGCCCAACTGTGTGAAAGCAGTATATAATTGTGTAATTATTCTATGACAGAAAGACTTAAACCATGTTCATTGTTCATGCAACAGTAGTGCACAGactacacttttagaaaaaagggtgctatttagaaccttaaagggttattgggctgtccccatagcagaaccatttgaagaaccctttttggttccatgtagaaccctttccacagaggattATACATGGaattcaaaagggttctaccaggaaccaaaaagggttctactatggggacagctgaaccATTTTAAAACCCtttattctaagagtgtagcaAATCATGTCTTCATTCAGGTTCAGAAACACAAGTTGCCTTTTAATGGTTTTCACAGCATTGTTTACtggagagagagatttatttgTAAAAACTGATTATGACAGTTCTAGGTACTGGAATAGAAGCCACCCAAGTGCATTATATATCATGCTGATAACCTTTTAACCAGATGATTTAGTCAAATACTCATGATAGTGTTGAGGTGGCTTTAGGCCACAATGTTTGACACCTCTTTCTCTGAGATCAGAGGGAAATGAATGTGTCTAACTGTTTACAATTAAATGTGTTTGACCTTGAGGATGTCACAGTGTTACAGgtattagacagacagagagtttgGGTAATTATATATGGCCTAAGTCTAACAAAGACATTATTGTTGAGTCAGTGAAagtttttgtttatgtttctgttgtgttttttttctgtggGGTTGGGACTAAACATATTGTTTAATTCAATAGCCATATGCAATAAATCCAGAAATGTGTGTTAACTAACATCAACAGTGCAGATCATGAATATGTAAATATTATGTTCATAATGTGTTTGTAAATATTCATTAAAAAAATTGGTCATGATGTCCCAGTGTAGAATTTGTACACCGTTAAACATTTGATGTACATAAATAAATGCTTATGTTTATTTTAGAATCATTACACTCTGATTGGTACTTTACTTGAAGCCTGACGTTTTGGTCTGATAAGCCTTTTTGTGTTGTAAATGTGTCATACCTACACAAAATACAGGTTACAAGTTAACTGTGTTAATTGTGTTTACTGCCTTTGGTTTTCCAGAATTAATTCATATTGAGATGCTTTAGTAGTTTCAAAATAGTCACCTTTCACATAGATCTATTATACTTTATAATTCCATCAGATTTTTAGCACTAATTTGAGAATTAAATGTTTCCGGAATTACATTTCTTTAACCTTTTAGATAATAAGGGCACTACCAATGGCTATTACATTAGCAGGATGACAGCCTGTTGAATAACACAAACGTTCTGTAATTCCTGACAGAAGCATGGGAGGTatgatgtatttatttatgaAATTGTATGATTGTAAATACACAAATCACACAGGTGTTTTATATTTCCGGACTATGTTGATTTATTGTGTTTAATTATATGGACTCAAACGACTGATTTTTAGTGTGAGCTTGTTTTTGTCTTAAATAAAGAAAAAGGAGCACTCTG

Function

NR:

description
low-density lipoprotein receptor

GO: NA

KEGG:

id description
K12473 LDLR; low-density lipoprotein receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558198.2 True 5338 mRNA 0.46 19 45001558 45015370

Neighbor

gene id symbol gene type direction distance location
LOC110486526 smarca4 coding upstream 5431 44967368 ~ 44996127 (+)
LOC110486523 LOC106607042 coding upstream 45558 44944449 ~ 44956000 (+)
LOC110485188 LOC106601310 coding upstream 57607 44878675 ~ 44943951 (+)
LOC110486520 LOC106607037 coding upstream 154550 44845151 ~ 44847008 (+)
LOC110486516 NA coding upstream 229234 44760430 ~ 44772324 (+)
LOC110486527 LOC100286593 coding downstream 3937 45019307 ~ 45025593 (+)
LOC118938604 NA coding downstream 7827 45023197 ~ 45023294 (+)
LOC110486529 LOC106607046 coding downstream 10819 45026189 ~ 45028620 (+)
zgc:162612 LOC106607050 coding downstream 96273 45111643 ~ 45115147 (+)
LOC110486534 NA coding downstream 120310 45135680 ~ 45140940 (+)
G1178465 NA non-coding upstream 36066 44964021 ~ 44965492 (+)
G1178457 yo84 non-coding upstream 39794 44960089 ~ 44961764 (+)
G1178511 NA non-coding upstream 86718 44914608 ~ 44914840 (+)
G1178508 NA non-coding upstream 88565 44912785 ~ 44912993 (+)
G1178502 NA non-coding upstream 97837 44903085 ~ 44903721 (+)
G1178536 NA non-coding downstream 2307 45017677 ~ 45017927 (+)
G1178541 NA non-coding downstream 20305 45035675 ~ 45035971 (+)
G1178549 NA non-coding downstream 29581 45044951 ~ 45045202 (+)
G1178554 NA non-coding downstream 35794 45051164 ~ 45051364 (+)
G1178555 NA non-coding downstream 51028 45066398 ~ 45101821 (+)
G1178425 NA other upstream 137375 44859869 ~ 44864183 (+)
G1178363 NA other upstream 333099 44668068 ~ 44668459 (+)
LOC110486491 LOC106607082 other upstream 795988 44174050 ~ 44211083 (+)
G1179156 NA other downstream 296960 45312330 ~ 45313033 (+)
G1179362 NA other downstream 447218 45462588 ~ 45462943 (+)
LOC110485192 LOC106601391 other downstream 514066 45529398 ~ 45554103 (+)
LOC118936304 LOC106601427 other downstream 1158658 46173911 ~ 46176562 (+)
G1180047 NA other downstream 1223774 46239144 ~ 46273601 (+)

Expression


Co-expression Network