Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC100135849 |
| gene name | LOC106607045 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 45001558 ~ 45015370 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| low-density lipoprotein receptor |
| id | description |
|---|---|
| K12473 | LDLR; low-density lipoprotein receptor |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021558198.2 | True | 5338 | mRNA | 0.46 | 19 | 45001558 | 45015370 |
44,992,000
44,994,000
44,996,000
44,998,000
45,000,000
45,002,000
45,004,000
45,006,000
45,008,000
45,010,000
45,012,000
45,014,000
45,016,000
45,018,000
45,020,000
45,022,000
45,024,000
NC_048577.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110486526 | smarca4 | coding | upstream | 5431 | 44967368 ~ 44996127 (+) |
| LOC110486523 | LOC106607042 | coding | upstream | 45558 | 44944449 ~ 44956000 (+) |
| LOC110485188 | LOC106601310 | coding | upstream | 57607 | 44878675 ~ 44943951 (+) |
| LOC110486520 | LOC106607037 | coding | upstream | 154550 | 44845151 ~ 44847008 (+) |
| LOC110486516 | NA | coding | upstream | 229234 | 44760430 ~ 44772324 (+) |
| LOC110486527 | LOC100286593 | coding | downstream | 3937 | 45019307 ~ 45025593 (+) |
| LOC118938604 | NA | coding | downstream | 7827 | 45023197 ~ 45023294 (+) |
| LOC110486529 | LOC106607046 | coding | downstream | 10819 | 45026189 ~ 45028620 (+) |
| zgc:162612 | LOC106607050 | coding | downstream | 96273 | 45111643 ~ 45115147 (+) |
| LOC110486534 | NA | coding | downstream | 120310 | 45135680 ~ 45140940 (+) |
| G1178465 | NA | non-coding | upstream | 36066 | 44964021 ~ 44965492 (+) |
| G1178457 | yo84 | non-coding | upstream | 39794 | 44960089 ~ 44961764 (+) |
| G1178511 | NA | non-coding | upstream | 86718 | 44914608 ~ 44914840 (+) |
| G1178508 | NA | non-coding | upstream | 88565 | 44912785 ~ 44912993 (+) |
| G1178502 | NA | non-coding | upstream | 97837 | 44903085 ~ 44903721 (+) |
| G1178536 | NA | non-coding | downstream | 2307 | 45017677 ~ 45017927 (+) |
| G1178541 | NA | non-coding | downstream | 20305 | 45035675 ~ 45035971 (+) |
| G1178549 | NA | non-coding | downstream | 29581 | 45044951 ~ 45045202 (+) |
| G1178554 | NA | non-coding | downstream | 35794 | 45051164 ~ 45051364 (+) |
| G1178555 | NA | non-coding | downstream | 51028 | 45066398 ~ 45101821 (+) |
| G1178425 | NA | other | upstream | 137375 | 44859869 ~ 44864183 (+) |
| G1178363 | NA | other | upstream | 333099 | 44668068 ~ 44668459 (+) |
| LOC110486491 | LOC106607082 | other | upstream | 795988 | 44174050 ~ 44211083 (+) |
| G1179156 | NA | other | downstream | 296960 | 45312330 ~ 45313033 (+) |
| G1179362 | NA | other | downstream | 447218 | 45462588 ~ 45462943 (+) |
| LOC110485192 | LOC106601391 | other | downstream | 514066 | 45529398 ~ 45554103 (+) |
| LOC118936304 | LOC106601427 | other | downstream | 1158658 | 46173911 ~ 46176562 (+) |
| G1180047 | NA | other | downstream | 1223774 | 46239144 ~ 46273601 (+) |
