LOC110486527 (LOC100286593)


Basic Information

Item Value
gene id LOC110486527
gene name LOC100286593
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45019307 ~ 45025593 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558199.2
TAGTTTGGAACTCTGACTCTCCCCTCAGGAAACCACGTGGTAGTTCTATACATGCTGCTGTGGATGTTAGCATCATGAACAGATTTCACTGAATTATTTTCCCGATAAATAGTATCCAGTTCACATGTAACCATGTCAGGCAAATCGGATTTCAAGATTAATTCAAAGTTTGCAGAGAAATATGACAAATATAGACAAAAAGAAGAGTTACAAAGGCTGAAAGACAAATATGGCGACCAAGCTGACGAGAGTGAGTCTGGTTCAGAGTCGGAGTCAGATGGTGATAGCGAGGTGGAACTTGACCCCAAAGTTGAAAGGGACTTCTACAGAACATTGTCTCTGCTGAAGAAGAAAGATCCTAAGATCTATCAGACTGATGCAACGTTTTACACAGTGGAAGATGCATCCATTGGGGACGATGCCCAGCCTTCAACTTCAAATAAAACAGAGAAGCCAATGTATCTGAAAGACTATGAGCGAAAAGTTATCTTGGAAAGGGGAGGTAAAtatgaggatgatgaggaggaggagagtgattaTGAAGAGGCTGCAAAGAGGAGAGAGAGAGCTGCATCTCCAAGTTACATCCAGGAGCAGAGAGAATTGAAAGAGAGCTTCCGTAAGTTCATACAGGACAGTGATGAGGAGTGCAGTGAGGAGGACTTTCAGCTGCtgaagaggaggaccaaaacacaGGAAGAGAAGgataaagaggaagaggatTATGTGGACTGGCTGAAAGGCCAGGCAGAGCTGGGGGGCCCAGAAGAGGTGCAGGACATGCAATACCTGAGGGACTATTGGAACGACCCCGAGCTGGATGAGAAGGAGTGTTTCCTTAGGGATTTTGTCCTGAATAAGGGCTACATGGAGAAAGATGACGTGGACAGGATCCCCAGCTATGACGAGCTGGTGAATGATGACGTGGAGGACTCAGAAGAGGATGGGGAGTCGTTCTTGGAGCGCCAGGAGGACTTTGAAAGACACTACAACTTCCGCTTTGAGGAGCCTGATGCACAGAAGATCAAGACTTACCCCCGTACCATTGCCACCTCTGTCCGCTCCAAAGACGAGCGCAGGAAGCTCAAAAGGGAGGAAGTGAAGGATAGGAAGAAAAAGGAGAAGGAGCAGAAGCACGAGCAGCTGAAGCAGCTGAAGAATCTGAAGCGTAATGAGATCATGCAGAAACTGCGGCGGCTGCAGGAGCTGACAGGCAACGAGCAGCTGGCCTTCAGTCAGGTGGACCTAGAGGGAGACTTTGACCCCCAGCAGCATGACCAGCTCATGCAGAAATTCTTTGGTGATGAATAttatggagaggaagagggggagaagccCCAGTTTGAAGTTGAAGAGCTAGAGGGTGAACACTGGAACTGGGACACATGGACAGGAGAGGGTGGAGAAAATGAATATGTTGGTGAAGAAGGGGAGGAAGAAGAGCATGAAGGAGAAGAGTATGACCAGCCAAACTGTGAAGATCCAGACTTTATTATGGATGCAGACTATGATCCCAGTCAGCCAAGCACCTCCAAGAAGCAGAAGAAAAAGGAGAAGATGAAGGTGGATGCCCCGCTGAtgggaaagaagagaaagaagtcTCATTTTGCTGAGGTCATTACCCAAAACAAGCCTGTGTTTGACCCCCAGGAGAAGTCCTTTGAGCAGTACCTGGATGAGTACTATAAGCTGGACTATGAGGACATCATAGACGACATCCCCTGCAGGTTTCGTTACAGGCAGGTCCTGGCCAATGACTTTGGCCTGTCCACTGATGAGATCCTGGGAGCAGATGAGAAAGAGCTGAACCGCTGGGCCTCGCTAAAGAAGACCTGCATGTTCAGGTCTGACAAGGAGGAGATGAGTGATTTGCAGAACTACAAAATCAAAggacaaaatgtgaagaaaaagaTAGAAGTCTTGAACTCTTTCTATGCTGAGGAAGACAAAACAGAGGGCAAGACCAAAGTGGGTaagaagagaagagacaggatGAAGAAGGGTGACAAGGAtctggaggatgatgatgatgctggacCCAGTCAGCAAAGCTCTGCATTGGACTCTGGGGAGGGGGTGGTAGTCCAGGCACTGAGAGAGGCAGGAGACCACGAAGAGGAGTTCCTGGTACCCAAATCCAagaagttgaaactggagcaggaaACAGTTGCTACCACTCAGGAGACTGCAAACACAAGGACTGAAAGGCCAAAATTGCCAAAGAAGAAAAACAGGCACCCAGGAAGCCGCCTCATGTCGGGGAAGGGGACATTCagggtgaaaatgggtgggcgaGAGTTCAGCGGACAGAGACTGAAGGCCTATGGACTGAATCCCAAGAGACTGCACTTCAGGCAGCTTGGCAGGCAGAAACGAAAGGCTCAAGCGAAGACTGAGAAGcaaggagtgagggagagaatggCACCATTATAATTTATGTCCCCTTATATTTTTGTGAATGGTTGGTATAAAGTGACAAACTGCACAATATACATGGACCAGAGAACAGTATAGTTCCTAATAAATCAAAGTTGAATGAGCTTACAATAGCATTGGCACTGATAGTTGACGTTCCAGCAATTTTTCGGAGTGCCTCtttttgtatattttgtattttattcctGAAAACTATCAGATCAACTTGAACAACTCTTGGAAAAATTGTGATTTACTTAACTGCATTTTGCAAACTGCAATAAAATTGTAGGACATTTTGTGTACTCCCAA

Function

NR:

description
protein KRI1 homolog

GO: NA

KEGG:

id description
K14786 KRI1; protein KRI1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558199.2 True 2727 mRNA 0.47 19 45019307 45025593

Neighbor

gene id symbol gene type direction distance location
LOC100135849 LOC106607045 coding upstream 3937 45001558 ~ 45015370 (+)
LOC110486526 smarca4 coding upstream 23180 44967368 ~ 44996127 (+)
LOC110486523 LOC106607042 coding upstream 63307 44944449 ~ 44956000 (+)
LOC110485188 LOC106601310 coding upstream 75356 44878675 ~ 44943951 (+)
LOC110486520 LOC106607037 coding upstream 172299 44845151 ~ 44847008 (+)
LOC110486529 LOC106607046 coding downstream 596 45026189 ~ 45028620 (+)
zgc:162612 LOC106607050 coding downstream 86050 45111643 ~ 45115147 (+)
LOC110486534 NA coding downstream 110087 45135680 ~ 45140940 (+)
hmox1a LOC106607056 coding downstream 126489 45152082 ~ 45154732 (+)
LOC110486541 LOC106607062 coding downstream 197876 45223469 ~ 45268420 (+)
G1178536 NA non-coding upstream 1380 45017677 ~ 45017927 (+)
G1178465 NA non-coding upstream 53815 44964021 ~ 44965492 (+)
G1178457 yo84 non-coding upstream 57543 44960089 ~ 44961764 (+)
G1178511 NA non-coding upstream 104467 44914608 ~ 44914840 (+)
G1178508 NA non-coding upstream 106314 44912785 ~ 44912993 (+)
G1178541 NA non-coding downstream 10082 45035675 ~ 45035971 (+)
G1178549 NA non-coding downstream 19358 45044951 ~ 45045202 (+)
G1178554 NA non-coding downstream 25571 45051164 ~ 45051364 (+)
G1178555 NA non-coding downstream 40805 45066398 ~ 45101821 (+)
G1178587 il-8 non-coding downstream 59670 45085263 ~ 45087208 (+)
G1178425 NA other upstream 155124 44859869 ~ 44864183 (+)
G1178363 NA other upstream 350848 44668068 ~ 44668459 (+)
LOC110486491 LOC106607082 other upstream 813737 44174050 ~ 44211083 (+)
G1179156 NA other downstream 286737 45312330 ~ 45313033 (+)
G1179362 NA other downstream 436995 45462588 ~ 45462943 (+)
LOC110485192 LOC106601391 other downstream 503843 45529398 ~ 45554103 (+)
LOC118936304 LOC106601427 other downstream 1148435 46173911 ~ 46176562 (+)
G1180047 NA other downstream 1213551 46239144 ~ 46273601 (+)

Expression


Co-expression Network