LOC110486529 (LOC106607046)


Basic Information

Item Value
gene id LOC110486529
gene name LOC106607046
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45026189 ~ 45028620 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558201.2
TGTAATTTCGTTTTTTGTTTAGAAACAAAAATTCCGTCAGGCACTTTCGCTGGCACCTCATGTAAGCGCGCGCATTCGCAAGACAACTTTGAATTACGGAAACGATTGAAGTGAAGCAAAGCTGTCAGCGAACTGTTTATATTCGGCAAACACGACGTGTCACCATGCTTCAGGATGTTATGGACACGGGAGAGTCGATGGTCAAAATCCTGAAAAGCAGCAAAGCTGACGATGAATTAAGAAAAGTGAGAGAAAAACAGCAGTGTTTCTTTGAGCGACACTTGGACATTAAGAAAACCATCACACTGGTGTTAAACGGTGTAGTTCAGTGTGAAGATGAGGCGAGCCAGAAGCTGCTGGACATGGAGGGGCAGAAGAGCCAGGCAGAGCGGGAGCTGGACAGTCTGGAGCAGGAGCTGCAGCAGTGTACAGCAAGGAGCCAGAACATGGACTCAGAACTACAGTTCCTGCAGAGGGAGCTGGAGAGTCTGCGTGACTCGGAGCAGGAGCTGCAGACCCTGCAGCAGGAGGTTGATGATGACACTACAGAAGTCATCCCATCAGCCATATACGTGGCCCAGTTGTACCACAAAGTGACCAGGATCAAGTGGGAGTATGACACGGAGCCACACATTCTGAGAGGAGTGCACTATGGAGCTGACCTGGCCACACCAATCAACATAGACTCCTCTGTGCGGTCTCGGTGTTCAGTCAGTGATGAGCTGTGGAACTTTGTCAGCACTGAATGGTAGAAGAGATCAAAGGAAAGTTGCCATATCTCTCCAGTAGTTGTTTGTCCTGTGGTTAGATTGtctgttgtttatgtgttgtgtgttgtaatacatttgttttatAATAAGATTGTATTCCTTATTGTTGGCATTGACTTGCATTACATTTTGTTATATTGAATAAAGCAGTTTTTCTAAGCATCACATTTCCTAGAATACTTATTTGGGTAGTAACCTATAACCCTAGCTTTTATTTGTATCCACTTTCACCATAGACatagtttttttttataaagaCCATTTTCTGCCAATAGGTGTCATTGCAATCCCACTGCTTTTTAATATGCTACTGAAATTACTGTATTGAAAAGTTGGGTGCTGATCACCTTTTTAATGCAATAAATGTCCAATGTGAAGGTGTGCTTATGCAACACAGTATTCTGTACTGCATTgcaccaataaaaataaaaacaacttt
>XM_021558202.2
TTTTTTGTTTAGAAACAAAAATTCCGTCAGGCACTTTCGCTGGCACCTCATGTAAGCGCGCGCATTCGCAAGACAACTTTGAATTACGGAAACGATTGAAGTGAAGCAAAGCTGTCAGCGAACTGTTTATATTCGGCAAACACGGTAAGACGTGTCACCATGCTTCAGGATGTTATGGACACGGGAGAGTCGATGGTCAAAATCCTGAAAAGCAGCAAAGCTGACGATGAATTAAGAAAAGTGAGAGAAAAACAGCAGTGTTTCTTTGAGCGACACTTGGACATTAAGAAAACCATCACACTGGTGTTAAACGGTGTAGTTCAGTGTGAAGATGAGGCGAGCCAGAAGCTGCTGGACATGGAGGGGCAGAAGAGCCAGGCAGAGCGGGAGCTGGACAGTCTGGAGCAGGAGCTGCAGCAGTGTACAGCAAGGAGCCAGAACATGGACTCAGAACTACAGTTCCTGCAGAGGGAGCTGGAGAGTCTGCGTGACTCGGAGCAGGAGCTGCAGACCCTGCAGCAGGAGGTTGATGATGACACTACAGAAGTCATCCCATCAGCCATATACGTGGCCCAGTTGTACCACAAAGTGACCAGGATCAAGTGGGAGTATGACACGGAGCCACACATTCTGAGAGGAGTGCACTATGGAGCTGACCTGGCCACACCAATCAACATAGACTCCTCTGTGCGGTCTCGGTGTTCAGTCAGTGATGAGCTGTGGAACTTTGTCAGCACTGAATGGTAGAAGAGATCAAAGGAAAGTTGCCATATCTCTCCAGTAGTTGTTTGTCCTGTGGTTAGATTGtctgttgtttatgtgttgtgtgttgtaatacatttgttttatAATAAGATTGTATTCCTTATTGTTGGCATTGACTTGCATTACATTTTGTTATATTGAATAAAGCAGTTTTTCTAAGCATCACATTTCCTAGAATACTTATTTGGGTAGTAACCTATAACCCTAGCTTTTATTTGTATCCACTTTCACCATAGACatagtttttttttataaagaCCATTTTCTGCCAATAGGTGTCATTGCAATCCCACTGCTTTTTAATATGCTACTGAAATTACTGTATTGAAAAGTTGGGTGCTGATCACCTTTTTAATGCAATAAATGTCCAATGTGAAGGTGTGCTTATGCAACACAGTATTCTGTACTGCATTgcaccaataaaaataaaaacaacttt

Function

NR:

description
kinetochore protein Spc24-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558201.2 False 1209 mRNA 0.43 6 45026189 45028620
XM_021558202.2 True 1204 mRNA 0.43 6 45026199 45028620

Neighbor

gene id symbol gene type direction distance location
LOC110486527 LOC100286593 coding upstream 596 45019307 ~ 45025593 (+)
LOC118938604 NA coding upstream 2895 45023197 ~ 45023294 (+)
LOC100135849 LOC106607045 coding upstream 10819 45001558 ~ 45015370 (+)
LOC110486526 smarca4 coding upstream 30062 44967368 ~ 44996127 (+)
LOC110486523 LOC106607042 coding upstream 70189 44944449 ~ 44956000 (+)
zgc:162612 LOC106607050 coding downstream 83023 45111643 ~ 45115147 (+)
LOC110486534 NA coding downstream 107060 45135680 ~ 45140940 (+)
hmox1a LOC106607056 coding downstream 123462 45152082 ~ 45154732 (+)
LOC110486541 LOC106607062 coding downstream 194849 45223469 ~ 45268420 (+)
usp43b LOC106601383 coding downstream 330119 45358739 ~ 45451742 (+)
G1178536 NA non-coding upstream 8262 45017677 ~ 45017927 (+)
G1178465 NA non-coding upstream 60697 44964021 ~ 44965492 (+)
G1178457 yo84 non-coding upstream 64425 44960089 ~ 44961764 (+)
G1178511 NA non-coding upstream 111349 44914608 ~ 44914840 (+)
G1178508 NA non-coding upstream 113196 44912785 ~ 44912993 (+)
G1178541 NA non-coding downstream 7055 45035675 ~ 45035971 (+)
G1178549 NA non-coding downstream 16331 45044951 ~ 45045202 (+)
G1178554 NA non-coding downstream 22544 45051164 ~ 45051364 (+)
G1178555 NA non-coding downstream 37778 45066398 ~ 45101821 (+)
G1178587 il-8 non-coding downstream 56643 45085263 ~ 45087208 (+)
LOC110485188 LOC106601310 other upstream 99872 44878675 ~ 44943951 (+)
G1178425 NA other upstream 162006 44859869 ~ 44864183 (+)
G1178363 NA other upstream 357730 44668068 ~ 44668459 (+)
LOC110486491 LOC106607082 other upstream 820619 44174050 ~ 44211083 (+)
G1179156 NA other downstream 283710 45312330 ~ 45313033 (+)
G1179362 NA other downstream 433968 45462588 ~ 45462943 (+)
LOC110485192 LOC106601391 other downstream 500816 45529398 ~ 45554103 (+)
LOC118936304 LOC106601427 other downstream 1145408 46173911 ~ 46176562 (+)
G1180047 NA other downstream 1210524 46239144 ~ 46273601 (+)

Expression


Co-expression Network