LOC110486528 (LOC106607047)


Basic Information

Item Value
gene id LOC110486528
gene name LOC106607047
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45029764 ~ 45034405 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558200.2
GGAGGGCAGAGTCCAGCCCAGCCCACTTCAAGTCGAGTCTCGCACCAGTCTATTTTCTCCCATCACAATCTGTCACGTCTGATCATCAGTCAGAGCGTACTGTATTCAAACGCAAGACAACTGCGCTAAATAAGAACACGTTCTCAGGCAAAGCTAAACTTCTAAAAGGTTTCCTGCTTGTCTGAGCCATCCAGTGGATTGTCCAGGCATTGCATCGTTTTGGATAATGCTATCACATTGAAGATTCTCATTACCATCCATTCTAATACTAAATACAAAAAACTGGACTGATCAGAAACAACATTCAAAGATAGATTTCCTAAGGAATGTACATTCCCCACTTCCAACATATTGAATTATGGACTGCCTAAGAACTATGTGACGCAGAGTGGAAAGCATCTTGTCAGCTAAAAAGAAAGCAACATTCTCAGAATACCAATGGAAGCATCGCATGCCGcttacgctgctgttgctgccccCACTGTGGTTCCCATGTCCCACTCGGCAGGGTACCTGCTCCGGATGTTCCACGAGTACCAGAGCAATGCTGTCATCAGAGAACACTACAACTACACAGGCAAACTGAAGGAGAACAAGTACAAGGATGGACTAAAGCCAGAGGCCATAGCCTTCCTGCTGATCTGCTTGCTCATAGTGCTGGAGAATGCTGTGGTGCTGTTGGCCATCTGGAAGAATAAGAAATTCCATCTGCCCATGTACTATCTGTTAGGCAACCTAACACTCTCAGACCTGCTAGCAGGCTTCACCTACATGGTGAACATTGTGACTTCAGGGGCCAACACTTTAAAGATGACCCCTGTGCTGTGGTTCCTGAGGGAGGGGGGAGTCTTCATAACGCTGGCTGCCTCCGTCATCAGCCTCCTGGCCATCGCCATTGAGCGCCACGTCACCATGGTGAGGATGAAGCCCTACCAGGGGGCCAAGCGAGGCCGGATGTTTGCCCTGATCGGGGCCAGCTGGGTGCTGTCAGTGTTCCTGGGGGTGCTGCCCGTCCTGGGTTGGAACTGTATGGGCCGTCTAGACCAGTGCTCCACTGTCCTGCCGCTCTTTGCCAAAAGCTACATCCTCTTCTTCATCACCGTGTTCACTGCTGTGCTGCTGGCCATTGTGGTGCTTTATGTGCGCATCTTCCACACTGTCAAGTCCAACACAAAGCACCTGGGCTCTGGCTCGCAGCGCAAAGGCCTGGCCCGCAAGTCCCAGAAGTACATGGCCCTGCTGAAGACCGTCACCATCGTGCTGGGTGTCTTCATCGTCTGCTGGCtgcctctcttcatcctcctcttgcTGGACTTCTGCTGCCCGGCACGGAGCTGCCAGGTGCTCTTCAAGGCGGACTACTTCCTGGGCATCGCCATGATCAACTCTCTCCTCAATCCCATCATCTATACCCTGACCAGTAAGGACATGAGGAGGGCCATCCTGAGGCTGCTGTGTCGACGCTGCCTCCTCACCAAGGATGGCCAGGTGAAGAAGATAGGGATGTCCTTTCTGGAGTGCAGTACCAGTAAGACTGAGGCACCCTCCCATAGGCTGGAGGGCCTGGAGATCACAGTCTCTTCTGCCAACTTCACCCCTTCTACTATTAAAGCCATCTACCCCAGGATGTCAAAGACATGACTTGTCCATGACGGCCCAATGTGACTCAGCAGTAATAATGGGTCCAATTACAATAAGAGCAGAGTTCTGGATACCCCCTTGACTGGACCACTCTTCGGCACCATCTTACAGCTGTGAGACTACTACATGTTATGTATGGGTTGTAAATGGAACTACAAGCAGGGAGGAAGTAATACTCTTCCTCTCACCTCAATGGTAGAGAACACCAGCGGAACCCACCATTGTCTTATGTTTTGCCTTCCTCCCCTGGTCTGGCATTTTATTCCTTGACAGATAAGCTGGAGGTTTCCACTTAAAGACTGGTCGGTCTATTGTAAGGAAGTCAAACCTCAGTCACAGTGTTAGAGAAATAAATACCTTGTTGGTTTTTAGTCTTCGGCGCCAAGCATTTAATGGATTAATATGCTGTTCTCATACTGTGAAAATCCTTTTCTCGTATGCTGAGATACAATATATCTTTCATACGTTAACAATCTTCCATAAATCCAAACTGCAGAAAAGAAAAACCCTCCTGAAGGAATGGATTCATGTTTGTAGCAGTATTTTGAATTCACAATTTACCGGTGTGTAAAGAGAACCACTCAACCAGCAGCTGTGAAATTAACAtaattcatgtttttttattaTACAAACATTGAAACACATGCAGTGCATTTTATTTTGATTCATACACATAAAGTATACATTTGAGTCATGCTAAGGCTCATCCTTATGTTCTCTCTCCAGAAAATACATAATACAAACATAATGACATGTAATTAAAACATGAAGCATCCACACCATGGCATTTTTGTCATCTGATCTCAGGTCTGCTGGAATTCTGGGTAGAGGTCCCCAGACCGACATTAGAGACTTGGTGGCTTTGTCACGTTGATGCCTCTTCTGGTTTGCACATCTTTGGAGGTCTCTAAAACACACGTAGCAGCAGAGATGATTGTGAGCAATAAAAAGGACAGATTAGGCTTATTGACTGGCTCTGGTTTTGTGGACTCACAAGTATGGAAATCATATTGAACACAGCCTGTTCACAAAAACAATAGCCTTCAGAACTTTCCTGAACAAGCTGGAGAATATCCCTCTCATGCAATGAAGAGTTATGTCTATCTTCTGTAAACAGTGGTTAATAGACATTTGTACAGAAAAAACCACAAATGCTTGGGGTTCCATGTATAAAATTCCATTGTGACAGCAGTGATGTTTGAAAAACAAGCAAGCAATTCAAAATCTGTTTTCACATTGTATATAAATGTACCAATGAAACTATTTATATTTCTGTCTTACTGTACTACACAGTATATTGTGTAAATAAAATGAACTATAGTTTCTGTATTTTGTTTATTCTGAACTAAACCTAATTTATGAGGCCACTGCCAATTCaaacaataaataaatgtatGTGAACAATATCTACAAAAACAGTATTTTTGGTCATTGTTTTGCAAAATAAACATCCTTACAAATAA

Function

NR:

description
sphingosine 1-phosphate receptor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558200.2 True 3104 mRNA 0.45 2 45029764 45034405

Neighbor

gene id symbol gene type direction distance location
LOC110486524 LOC106607044 coding downstream 70104 44955574 ~ 44959660 (-)
LOC110486521 rbp coding downstream 165538 44856937 ~ 44864226 (-)
tdx tdx coding downstream 177091 44850578 ~ 44852940 (-)
hook2 LOC106607036 coding downstream 226537 44786935 ~ 44803227 (-)
LOC110486518 LOC106601332 coding downstream 255130 44772602 ~ 44774634 (-)
il-8 il-8 coding upstream 50864 45085269 ~ 45087130 (-)
LOC110486532 LOC106607051 coding upstream 98624 45133029 ~ 45135645 (-)
LOC110486530 LOC106601319 coding upstream 102351 45136756 ~ 45143108 (-)
ankrd54 LOC106607054 coding upstream 108923 45143328 ~ 45145991 (-)
LOC110485190 LOC106601322 coding upstream 114159 45148564 ~ 45150974 (-)
G1178980 LOC106601324 non-coding downstream 8017 45020298 ~ 45021747 (-)
G1178974 NA non-coding downstream 15019 45012785 ~ 45014745 (-)
G1178962 NA non-coding downstream 33761 44994826 ~ 44996003 (-)
G1178959 smarca4 non-coding downstream 39171 44988969 ~ 44990593 (-)
G1178946 LOC106607042 non-coding downstream 67881 44946191 ~ 44961883 (-)
G1179064 NA non-coding upstream 112059 45146464 ~ 45146663 (-)
G1179069 NA non-coding upstream 140534 45174939 ~ 45175366 (-)
G1179074 NA non-coding upstream 144956 45179361 ~ 45179568 (-)
G1179056 NA non-coding upstream 147019 45181424 ~ 45181741 (-)
pik3r6b NA non-coding upstream 166967 45200981 ~ 45213655 (-)
G1178982 LOC106607046 other downstream 1151 45026515 ~ 45028613 (-)
G1178958 LOC106607010 other downstream 48564 44969210 ~ 44981200 (-)
G1178765 LOC100380669 other downstream 298413 44725639 ~ 44731351 (-)
G1178763 LOC106607027 other downstream 376296 44653072 ~ 44653468 (-)
LOC110485184 LOC106601341 other downstream 484280 44467268 ~ 44545484 (-)
G1178996 NA other upstream 17171 45051576 ~ 45052024 (-)
zgc:171844 LOC106607059 other upstream 149055 45182660 ~ 45193315 (-)
G1179619 LOC106601391 other upstream 495031 45529436 ~ 45530114 (-)
G1179621 LOC106607015 other upstream 497453 45531858 ~ 45532662 (-)

Expression


Co-expression Network