il-8 (il-8)


Basic Information

Item Value
gene id il-8
gene name il-8
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45085269 ~ 45087130 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124362.1
GCGGCAGATTCAAACTCTCCACAGacagagaaggaaggaaagaaagaactCGCAACTAGactgacaaagagagaaagatataacAATAAAATACTTTACAATACCTGTTACCAGCTAGATAACAACCGTAGACTTTATTAGAGGATTTCTAGTAGGATCATCTGTAACCCCAAGATGAGCATCAGAATGTCAGCCAGCCTTGTCGTTGTGCTCCTGGCCCTCCTGACCATTACTGAGGGGATGAGTCTGAGAGGCATGGGGGCTGACCTGCGATGTCGCTGCATTGAGACGGAAAGCAGACGAATTGGTAAACTCATTAAGAAGGTGGAGATGTTCCCTCCCAGCTCGCACTGCAGagacactgagatcatTGCCACTCTGAGCAAGAGCGGTCAGGAGATTTGTCTGGATGTCAGCGCTCCGTGGGTCAAGAGGGTCATTGAGAAGATGCTGGCCAACAACAAATGAAGAGGGGTCATCATTCCATGGGTCATCATTCCATGGGTCATCATTCCATGGGTCATCATTCCATGGGTCATCATTCCATGGGTCATCATTCCATGAATTCTCAAGATACAAACCAAATAAGTATTTATAAGCTTGATAGGCTGAATTCTATCATGTTCTATCCAGGTTGGAATACAACATTAGATTTAGAGTGGCATGAGACTGTTTTAAGTGAAAAGACAGTCGGTTTCTTATATACAACCAAGTACTATGTACTAAacttatattttattttaatttataaATTGTTTTTCTTTCATTGTTATAATCAAATTATGAGATTTACATGCATTCCGGTTGTATTGGAATGATTTCGTAATACAAACCTCAGTATATTTATTGATATATTTATTTGCCTATTTATTCAAATTAAACTGTTGGATCATGTTGAAACTTCCAATCTAATTCAATTACAATAAATGCGTGAAAAAAAA
>TU1344629
CTCTCCCCACAGTGGCAGACAAAGCGGTTCTCTTCTCACAGCGGCAGATTCAAACTCTCCACAGacagagaaggaaggaaagaaagaactCGCAACTAGactgacaaagagagaaagatataacAATAAAATACTTTACAATACCTGTTACCAGCTAGATAACAACCGTAGACTTTATTAGAGGATTTCTAGTAGGATCATCTGTAACCCCAAGATGAGCATCAGAATGTCAGCCAGCCTTGTCGTTGTGCTCCTGGCCCTCCTGACCATTACTGAGGGGATGAGTCTGAGAGGCATGGGGGCTGACCTGCGATGTCGCTGCATTGAGACGGAAAGCAGACGAATTGGTAAACTCATTAAGAAGGTGGAGATGTTCCCTCCCAGCTCGCACTGCAGagacactgagatcatTGCCACTCTGAGCAAGAGCGGTCAGGAGATTTGTCTGGATGTCAGCGCTCCGTGGGTCAAGAGGGTCATTGAGAAGATGCTGGCCAACAACAAATGAAGAGGGGTCATCATTCCATGGGTCATCATTCCATGGGTCATCATTCCATGGGTCATCATTCCATGGGTCATCATTCCATGGGTCATCATTCCATGAATTCTCAAGATACAAACCAAATAAGTATTTATAAGCTTGATAGGCTGAATTCTATCATGTTCTATCCAGGTTGGAATACAACATTAGATTTAGAGTGGCATGAGACTGTTTTAAGTGAAAAGACAGTCGGTTTCTTA

Function

NR:

description
putative cxc chemokine precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124362.1 False 941 mRNA 0.39 4 45085269 45087090
TU1344629 True 741 TUCP 0.45 4 45085509 45087130

Neighbor

gene id symbol gene type direction distance location
LOC110486528 LOC106607047 coding downstream 50864 45029764 ~ 45034405 (-)
LOC110486524 LOC106607044 coding downstream 125609 44955574 ~ 44959660 (-)
LOC110486521 rbp coding downstream 221043 44856937 ~ 44864226 (-)
tdx tdx coding downstream 232596 44850578 ~ 44852940 (-)
hook2 LOC106607036 coding downstream 282042 44786935 ~ 44803227 (-)
LOC110486532 LOC106607051 coding upstream 45939 45133029 ~ 45135645 (-)
LOC110486530 LOC106601319 coding upstream 49666 45136756 ~ 45143108 (-)
ankrd54 LOC106607054 coding upstream 56238 45143328 ~ 45145991 (-)
LOC110485190 LOC106601322 coding upstream 61474 45148564 ~ 45150974 (-)
LOC110486535 mcm5 coding upstream 67636 45154726 ~ 45159515 (-)
G1178980 LOC106601324 non-coding downstream 63522 45020298 ~ 45021747 (-)
G1178974 NA non-coding downstream 70524 45012785 ~ 45014745 (-)
G1178962 NA non-coding downstream 89266 44994826 ~ 44996003 (-)
G1178959 smarca4 non-coding downstream 94676 44988969 ~ 44990593 (-)
G1178946 LOC106607042 non-coding downstream 123386 44946191 ~ 44961883 (-)
G1179064 NA non-coding upstream 59374 45146464 ~ 45146663 (-)
G1179069 NA non-coding upstream 87849 45174939 ~ 45175366 (-)
G1179074 NA non-coding upstream 92271 45179361 ~ 45179568 (-)
G1179056 NA non-coding upstream 94334 45181424 ~ 45181741 (-)
pik3r6b NA non-coding upstream 114282 45200981 ~ 45213655 (-)
G1178996 NA other downstream 33245 45051576 ~ 45052024 (-)
G1178982 LOC106607046 other downstream 56656 45026515 ~ 45028613 (-)
G1178958 LOC106607010 other downstream 104069 44969210 ~ 44981200 (-)
G1178765 LOC100380669 other downstream 353918 44725639 ~ 44731351 (-)
G1178763 LOC106607027 other downstream 431801 44653072 ~ 44653468 (-)
zgc:171844 LOC106607059 other upstream 96370 45182660 ~ 45193315 (-)
G1179619 LOC106601391 other upstream 442346 45529436 ~ 45530114 (-)
G1179621 LOC106607015 other upstream 444768 45531858 ~ 45532662 (-)
LOC110486586 ubald2 other upstream 1426367 46510585 ~ 46535713 (-)
LOC110486590 LOC105022923 other upstream 1796338 46827752 ~ 46915018 (-)

Expression


Co-expression Network