zgc:162612 (LOC106607050)


Basic Information

Item Value
gene id zgc:162612
gene name LOC106607050
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45111643 ~ 45115147 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559463.2
ACCAACGAGAGGGGATGCTGGACATCGTGGAAGACTCGCCGTGCTTCATAACTTTCTCAGCCTCCCTTTTCTCTGTTTAAGGCTAAAAGGTTGTTCCATTTTGTGTTTGTTTGGAGATAAAAGGCTTTGGATTTTTTTAAGGGTTGTTTTTTCCTCTTGAATGACTAACGTGAGAGGGGACTGGAGCGCACATATTTTAAGCTTGTTTTTTTTGTGAATGGAGAGAGCAAAGCCTTGCGCGTGAGCATCTATCCCTTTCAAATAACTGACCCTTTCCCACCTTGTTGGGGCAGGTGATATTGGCTCTGCACGTGGACTATGACATTGGACTTGGAGCCCATGGAAGATTTTGTTATTGACGTAGTAGGAGAGGGACTCAGGGATAACGGAGAGGAGCATCTCGTGTCCTTACCTTTGGAAGAGACGAGAAGTGCAGAGCATGAACCCGAAACGTTTTTGTCTTCTAGTGGGCAGGATGAGGATAGGGACGACTACTCACCCACATCGAAGTGTCCTCCAGCAGCAAGTAAAAGCCCGGCGTCGGTAAAGCCTCCGTACTCCTACATCGCTTTGATAACAATGGCCATATTACAAAGCCCAAAAAAGCGACTTACCCTCAGCGAGATATGTGACTTTATCAGCCACCGATTCGTTTATTATCGTGAGAAGTTCCCTGCCTGGCAGAATTCCATCAGACACAACCTTTCGCTCAATGACTGCTTTGTCAAAATGCCCCGGGAGCCTGGTAATCCAGGGAAGGGAAACTACTGGACGCTAGACCCCAATTCTTCCGACATGTTTGAGAATGGGAGCTTTCTGCGTCGAAGGAAGAGGTTCAAACGCCAGCATTTTCGTTTCGGGGTGCTCAAGGAGCAATCCCTTGAGCCCAGTGGCTTTCACAACTTTTATGGTACTTATGGACTCGGCACAGCGGGTCTTCAGCTACCCAGTTTGGAGATATATCCATTCGGCTTCCATCACCATGCGCACTCATCATGCGCTCCCACCATCCCACCTGTTAGCAGCCTGCTACCGGCTTTGTCGAGCCTATTTACCCGGAACTCTTTCGCTGCCAAGGCTTTTCTTCAATCACAACAGCCTGTTACTATCGGGTCCTTCAATCCGAGCCGCTATGCCACCTTTTCTTCCGCTTTGACCACCAGCGCTCCATATGCGTCCCCTGCGCTGTTCCACTCCGCGGCGTCTCCACATCTCGTCAGTTTACATGAAGAATATCAGAAATTACAAACTCAGCGCAGCACCTCTGACCTGGCTAAATGATCAGTGCTTGTGAATATTTGACTTGTGTTTCAGACTTTAAATTGTGTATTTGTATCTCAGGTGATAGAGATTTTTGAAGCTCTTGTGGAAACACAGGTATTTGGCAAATGGTAATTGGATGGACTTGTTGATCTAGGCCTATTTGAAGAGTTCTTAAGAATGCTGTAGATGTATGCCTTGCATTGATTACATTTGTCATAGCATCTTGCGTTTTTCTTTCTAAAGTATGAAATTAAATTTGTCCATTGAAATGCAAATATTTAACTGACGAGTTTCCTTTTACATTTGGAAAGAAATAAAGTGAATtatttaaaacaatatatttaaCTCAGTCATTTTTCTTATAGGCCTTTGCGTCACTGACCTGTCAATATTGGCAAAATTGAAGATCTGTAATTGATGCCTTTAACAACTGATTATTGCATAGCGTATATCTTTAATCAGTGGAAATATAGCTGCACATTTTTACCTATAGCAGGCCTAAATGCGCAGTGAACTTGATTGCATCTTTCAACAGGAAAACCATTAAATTCAACATTTTGCTGAGTGTGTAGATGATGCGTGGGTTAAATTATGCTCAGAACTTTTTACAAAATTAGGGTCATTTTAGTTTGTCTGGTTAGCATTTCTCTAATAATAAAATATTATTTCATTGAATTATATGATGTTTAGGCCTACATGTAAAACATGTAAGCCTATATTAAGTCAAATAAAAATCTTAAAATAATTGTCACATTTTGACGGTTATAGCTTTAAAAGTGTCTATCGAAAGAGCGACTGAGGATCAAGCGATGTGCGGAATCAAACTATATGAAGATCACATGAACGAGATGCAACATTGTGTTGACTCTAATCTAGGCTAAATCCAATATCCTGGAATGTTAGGACTACATTTTAAGGATTTTCTGATACTACAattgaaacattttatttttgttcgtttttttatGGCTACAATATAGGCCCTACTgcaattatttatatattttgaaaATCTCTCAATATGGTTGTTCTGCAGCATCTCGCTGTCGTTTGCCATTCATCCTCAAAAACTGACGCTTAAACACATTGTAAATGAATGCTCTTTCTAAATTTGAAGTCTAGAAGTAACGGTCTGTGCAGCTGCGCAGCTTTCAGATTGTCAGTTGAGTTACACCACATCCATCCATTAGTTCAACATCGTATTATAATTGCCTGATTTTGCGTCATGGGGCCACACAGCCTGCTCGTTCCAAAAATGGAAAAAATCTGTGCAACACATTCAAAGACTTCATATTTTCATGTCAGATTATGAGGTCATTTCTAAAGCCGCATTTGGTTGTCTCTCCAAAGCATTCCTTataagattttttttatataaatattttaATATGTTTGCATGGGAGATGTAGCTTGAGCCTATAGCTTACTATTCAAGAGGTATACCACAAACGAACCAGTTGAGGATTTATTCAAATATGTGTTTAAATAGACATCGTGATTTAACTCGGTTTTGCTAGAACCAAATTCGTGGAATATAGTTCTATTAGTCAGAAAATAAAACCAATATTACATTCTAAGAAAATTAAAGCCCTATTAAAGCCCTGAGAATTATGGATGTTTTAAAACAATATTTTAAAGTAATGAATAACATATCTTCATAACTTGATAGATATCACAATCAAGTTAAATTGTGATACTGTATGCTAAATATTTGTGAACATAAATGGAACAAAACATAAAAGGAATATAAACGTTTCCTTACACTCTTAATATCGTTTGAAATATCTGGAACCACATTGGAGATGATTCTGGTACTGTTTAAACCCAAAGTAACAGACATTTCTCATGGATTATAATGAAGATTGAGTATTTGAGACAGATTATTCATGTAAATGTTGAATTATATAATTAACCATATTTGTTGTTTTCTTTTAACGTCCTTGTTTAGATTTATTGTGTGTTTTTCTTTGACTTCTTTGCCAGACCGTGCTGTGTTACACTGAACATGACAGGATGAAAATAATGTTAGGATTCAAGGGAGGAAAGTATTTATTTCATTCTATTCTAAGTCTAGTTTAGATTGATGACTACTCTAAAGCTTTTGGAAAGGGCTGATGGATAGAAGTACAATATCCAATTCAGTCTAATGCCGTTTGGCAACCATTGAAggagttaaataaataaaaacattgttgCCTGATGGCGAATTGTTAAGTTGCTTGACTGAGAGAGAAATACACAT

Function

NR:

description
forkhead box protein D2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559463.2 True 3505 mRNA 0.38 1 45111643 45115147

Neighbor

gene id symbol gene type direction distance location
LOC110486529 LOC106607046 coding upstream 83023 45026189 ~ 45028620 (+)
LOC110486527 LOC100286593 coding upstream 86050 45019307 ~ 45025593 (+)
LOC118938604 NA coding upstream 88349 45023197 ~ 45023294 (+)
LOC100135849 LOC106607045 coding upstream 96273 45001558 ~ 45015370 (+)
LOC110486526 smarca4 coding upstream 115516 44967368 ~ 44996127 (+)
LOC110486534 NA coding downstream 20533 45135680 ~ 45140940 (+)
hmox1a LOC106607056 coding downstream 36935 45152082 ~ 45154732 (+)
LOC110486541 LOC106607062 coding downstream 108322 45223469 ~ 45268420 (+)
usp43b LOC106601383 coding downstream 243592 45358739 ~ 45451742 (+)
LOC110486545 grb2 coding downstream 369651 45484798 ~ 45524322 (+)
G1178555 NA non-coding upstream 9822 45066398 ~ 45101821 (+)
G1178587 il-8 non-coding upstream 24435 45085263 ~ 45087208 (+)
G1178554 NA non-coding upstream 60279 45051164 ~ 45051364 (+)
G1178549 NA non-coding upstream 66441 45044951 ~ 45045202 (+)
G1178541 NA non-coding upstream 75672 45035675 ~ 45035971 (+)
G1178617 NA non-coding downstream 31076 45146223 ~ 45147982 (+)
G1178630 NA non-coding downstream 50903 45166050 ~ 45166423 (+)
G1178631 NA non-coding downstream 52129 45167276 ~ 45168172 (+)
G1178655 NA non-coding downstream 78858 45194005 ~ 45194242 (+)
G1178658 NA non-coding downstream 85078 45200225 ~ 45201070 (+)
LOC110485188 LOC106601310 other upstream 185326 44878675 ~ 44943951 (+)
G1178425 NA other upstream 247460 44859869 ~ 44864183 (+)
G1178363 NA other upstream 443184 44668068 ~ 44668459 (+)
LOC110486491 LOC106607082 other upstream 906073 44174050 ~ 44211083 (+)
G1179156 NA other downstream 197183 45312330 ~ 45313033 (+)
G1179362 NA other downstream 347441 45462588 ~ 45462943 (+)
LOC110485192 LOC106601391 other downstream 414289 45529398 ~ 45554103 (+)
LOC118936304 LOC106601427 other downstream 1058881 46173911 ~ 46176562 (+)
G1180047 NA other downstream 1123997 46239144 ~ 46273601 (+)

Expression


Co-expression Network