LOC110486530 (LOC106601319)


Basic Information

Item Value
gene id LOC110486530
gene name LOC106601319
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45136756 ~ 45143108 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941252.1
ACTGACATAGGCCTAGCTGCACCAGAAGCCACGGACTGCTATTGCAGTACCTTCCGGATAACCCAGCACATAATCAGCAATACGAGTTAGAAGAGGTTCCAAATGTTGGGAGTTAGGGATTCTCAGCTAATGAAaggggTGACACAGAGAGACGAGCAAGCCTGttgaggagaaaagagagatcaTGGCTTTTGAGGAGATCAAGAAGAAAGGAGTAGTTGAGGTAGGGATGGAAGGGGAAGTGGGCCTTGTGGCTGGTcgcagtcagagagagaagaggagatcatACAAGGACCTgctcagagaggaggaggagattgcTGCACAGGTCCGCAAGTCCTCCAAGAAACGGCCCAAGGACTCAGAACCTTTCTTATTGGGAGGGGACTCccacaagaagaagaaaaagcacAGTGAAGACTACTATTACAGAGACCAGCAAGGCTCAGGCCCACCTCCCCACAAGAAGAAGCGAAAGTCGTCAGACCACTCCCCTTCCctgtcctcctcatcttcctcccatCCCACAGACACAGCCATGGGGCTCCTACAGGCCATCACCTCCCCAATGGCCACCGGCTCAGACCCGAGCCCACACCTGCACAAGAAGCCCTCCtacccctccttctcttcctcccactTCTCCAAAGACCGCAAACGTGATGGGAGCACCGGAGGAAGCAAAGGCAGCCACTCCTCTCATTCCCGTCCTatgtcctcatcctcctcttccaaaAAGCACTCCTCCAAGTCGTCGTCTCTGTTCCAtggtggtaccggtacccctaAAGGAGATCTCCTGAACATACGTGAGCCGGATGGGCTGAGGATGAAGCTCATGGTCTCGCCTAAGGAGAAGGCCGAAGGAGAGGGctttcccttccctccccactcctcctcatcctcaaaaggggggataaaaaaggagaaggacagagaccgGAAGCAGCTCTCTAAAGTCCCCAAGAAGATGCAGCAGAGCCGAGATCCACTGCCTGTTGTGGGGAAAGAAGTGGAGGTGGAGGGGCACTACGGTGAGGGTATGGGGGGAGACAGCTCCTCCTCGGGGGGCGAACTGGAGGCAGGAGAGCTGGTGATAGACGACTCGTACAAGCATCTGtcaaagaaaaagaagaagagcaAGAAAAGCAAGAAgaaaaaggagaaagagaaggacagggAGAAAGACAAAGGCGGGAGAGAGAAGAAGCACAGCAAAGGATCAGGAGGGGACCCATCGAGAGGCCACACCCATACCCATGGCTCAGCCAATCATTCTGCAGCTGGTGGAATGTATGCCATGGGGGCCCCCATCCCTACTCCCATCCTTACTCACCATCATCAAAGTAATGAAGTTGCAATgatggagaagaagaaaaagaaggaggagagggaaagggaaaagcACGAGAAGGAGAAAGATAAGccCAAGAAGAAGAACACAACAGCGTACCAGGTGTTCTGTAAAGAGTACAGGGTCAACATCAATGCAGAGCAGCCGGGACTAGAGAAAGACTTTACTGTGTTTGCAGTGTTCGGGGAGCTGAGCAAAAGGTTGGCAGAGGTGTGGAAACAGCTCCCAGAAAAAGATAAACTGGTGTGGAAGCAGAAAGCTCAGTACCTGCAGCACAAGCAGAACAAAGCTGAGGCCACCACAGTCAAACGCAAGAGCTCCACAGATGGAGTCAAAAGCAAAGGCTCTATGAAGGGCATGGGGCTGGCAGCAGGACTGGTGTCCCCCAACCGGGCGTCTGTGGGTGTGTCCCTGTCACCAGCACGGGTCCCTGATGTCGACCCCATCGATGCGGCTGCCCACCTACAGCTACTGGGAGAGTCCCTGTCCCTCATCGGCCACCGATTACAAGAgacagagGGGATGGTGGCGGTGTCAGGCAGTCTCTCTGTACTGCTGGACTCCATCTTGTGTGCCCTGGGACCCCTGACCTGCCTCACAGCACAGATCCCCCAGCTCAACGGATGTCCCCGCCAAGTCTTGtccaacaccttggacaacatTGCCTACATCATGCCAGGGCTGTGAAGCCAACATAAACATTCCTTTCCCGTCTACTGAGTGTCCTCGCCATGAAGTAAAACGTTTGGAGTGAGAGTGCCCATTATAGAAGCGTGGCTTGTGGCTTGGGATGCAGACAATTATTTATGcagcaaggcattggaaaacgtgGATATTAATACTTTcaacatgtttttaaaatgtattttaaaatgcgTTCATTtccttattattattttttttactgaaacCTATTTTAATGAACACTCTTTTCTTTCCCTCTGGCATGTCTGTTAGCGTCTTCAGATTTAACTGTATGTTCTTGTGTGAATGTGTGCGGGCGTGTGTGTTTTCTATGTGTATACAGTATCTCCAGAGGCTAGTTTTTACTCAAAAGGACAAGCCAGGGCCCaagtccaccattgttcctcttCCATCAACATACCATGAAAATAATATATTTGACAACTGTTCATGTTTGTTTTACCAGTTAATTACATAATGACTTGTTATTTTGTATATATGCTATTTTACTGAGTATTAAGGTTTAGATTTTGATTGTAGAATGAAATTTGTATACGGTAGAAACATTTTGAGGCAACTGCAATCAAACTACTGTTGTGGGTTTTGCAGCTTTTGAAGCACAAAGCTGTAAGCCACATTTTCATGAATACATCTCTTCCTATGAGTATACAGTATGGAAATGTTGACAATAAAAATGACAGTGTCAACATGCAGACTGAGCATAGCAGACTTATATGACTGGTATGTACCACCACCACCTTCTTTCAACTACAGACTCCTAAACACAAACCAATGAATGAATAAGGCTTGTATTTATTGTAACAAACCATTGTAGTGTATCAAGATAATTTACATTTTAAGGCCAGTTATACCTACAACTGAAATTGCTATTTTTAAGTGAGTAAATGAATTGTACATGAACTGCAGCAGCTGCCTGTGAATCCTCAGGATCCTTGTCAGACTGAGGATGATATGCTTTTCTCTACACATACAATAGAACTAGAACACTATGTCTGTGCTTCCACATGCCTCTATGCCCCAGCCAGGGAGGAATGCAAAACCTTCCCTAATGACGTGCTTTGGATTTTTGTTAATCTGTAAACCAAGAAGTAAAATCTAGTGTAATTTGG
>XM_021558204.2
CACAGTCAAGTCCCTCCCCCTGCCGATTCGCATCGTTGTAGACTGATATCAAAGATGGCGACTGGAACCGCGTAAATTGGTGATTCCGGAGAGTGACACAGAGAGACGAGCAAGCCTGttgaggagaaaagagagatcaTGGCTTTTGAGGAGATCAAGAAGAAAGGAGTAGTTGAGGTAGGGATGGAAGGGGAAGTGGGCCTTGTGGCTGGTcgcagtcagagagagaagaggagatcatACAAGGACCTgctcagagaggaggaggagattgcTGCACAGGTCCGCAAGTCCTCCAAGAAACGGCCCAAGGACTCAGAACCTTTCTTATTGGGAGGGGACTCccacaagaagaagaaaaagcacAGTGAAGACTACTATTACAGAGACCAGCAAGGCTCAGGCCCACCTCCCCACAAGAAGAAGCGAAAGTCGTCAGACCACTCCCCTTCCctgtcctcctcatcttcctcccatCCCACAGACACAGCCATGGGGCTCCTACAGGCCATCACCTCCCCAATGGCCACCGGCTCAGACCCGAGCCCACACCTGCACAAGAAGCCCTCCtacccctccttctcttcctcccactTCTCCAAAGACCGCAAACGTGATGGGAGCACCGGAGGAAGCAAAGGCAGCCACTCCTCTCATTCCCGTCCTatgtcctcatcctcctcttccaaaAAGCACTCCTCCAAGTCGTCGTCTCTGTTCCAtggtggtaccggtacccctaAAGGAGATCTCCTGAACATACGTGAGCCGGATGGGCTGAGGATGAAGCTCATGGTCTCGCCTAAGGAGAAGGCCGAAGGAGAGGGctttcccttccctccccactcctcctcatcctcaaaaggggggataaaaaaggagaaggacagagaccgGAAGCAGCTCTCTAAAGTCCCCAAGAAGATGCAGCAGAGCCGAGATCCACTGCCTGTTGTGGGGAAAGAAGTGGAGGTGGAGGGGCACTACGGTGAGGGTATGGGGGGAGACAGCTCCTCCTCGGGGGGCGAACTGGAGGCAGGAGAGCTGGTGATAGACGACTCGTACAAGCATCTGtcaaagaaaaagaagaagagcaAGAAAAGCAAGAAgaaaaaggagaaagagaaggacagggAGAAAGACAAAGGCGGGAGAGAGAAGAAGCACAGCAAAGGATCAGGAGGGGACCCATCGAGAGGCCACACCCATACCCATGGCTCAGCCAATCATTCTGCAGCTGGTGGAATGTATGCCATGGGGGCCCCCATCCCTACTCCCATCCTTACTCACCATCATCAAAGTAATGAAGTTGCAATgatggagaagaagaaaaagaaggaggagagggaaagggaaaagcACGAGAAGGAGAAAGATAAGccCAAGAAGAAGAACACAACAGCGTACCAGGTGTTCTGTAAAGAGTACAGGGTCAACATCAATGCAGAGCAGCCGGGACTAGTGTTCGGGGAGCTGAGCAAAAGGTTGGCAGAGGTGTGGAAACAGCTCCCAGAAAAAGATAAACTGGTGTGGAAGCAGAAAGCTCAGTACCTGCAGCACAAGCAGAACAAAGCTGAGGCCACCACAGTCAAACGCAAGAGCTCCACAGATGGAGTCAAAAGCAAAGGCTCTATGAAGGGCATGGGGCTGGCAGCAGGACTGGTGTCCCCCAACCGGGCGTCTGTGGGTGTGTCCCTGTCACCAGCACGGGTCCCTGATGTCGACCCCATCGATGCGGCTGCCCACCTACAGCTACTGGGAGAGTCCCTGTCCCTCATCGGCCACCGATTACAAGAgacagagGGGATGGTGGCGGTGTCAGGCAGTCTCTCTGTACTGCTGGACTCCATCTTGTGTGCCCTGGGACCCCTGACCTGCCTCACAGCACAGATCCCCCAGCTCAACGGATGTCCCCGCCAAGTCTTGtccaacaccttggacaacatTGCCTACATCATGCCAGGGCTGTGAAGCCAACATAAACATTCCTTTCCCGTCTACTGAGTGTCCTCGCCATGAAGTAAAACGTTTGGAGTGAGAGTGCCCATTATAGAAGCGTGGCTTGTGGCTTGGGATGCAGACAATTATTTATGcagcaaggcattggaaaacgtgGATATTAATACTTTcaacatgtttttaaaatgtattttaaaatgcgTTCATTtccttattattattttttttactgaaacCTATTTTAATGAACACTCTTTTCTTTCCCTCTGGCATGTCTGTTAGCGTCTTCAGATTTAACTGTATGTTCTTGTGTGAATGTGTGCGGGCGTGTGTGTTTTCTATGTGTATACAGTATCTCCAGAGGCTAGTTTTTACTCAAAAGGACAAGCCAGGGCCCaagtccaccattgttcctcttCCATCAACATACCATGAAAATAATATATTTGACAACTGTTCATGTTTGTTTTACCAGTTAATTACATAATGACTTGTTATTTTGTATATATGCTATTTTACTGAGTATTAAGGTTTAGATTTTGATTGTAGAATGAAATTTGTATACGGTAGAAACATTTTGAGGCAACTGCAATCAAACTACTGTTGTGGGTTTTGCAGCTTTTGAAGCACAAAGCTGTAAGCCACATTTTCATGAATACATCTCTTCCTATGAGTATACAGTATGGAAATGTTGACAATAAAAATGACAGTGTCAACATGCAGACTGAGCATAGCAGACTTATATGACTGGTATGTACCACCACCACCTTCTTTCAACTACAGACTCCTAAACACAAACCAATGAATGAATAAGGCTTGTATTTATTGTAACAAACCATTGTAGTGTATCAAGATAATTTACATTTTAAGGCCAGTTATACCTACAACTGAAATTGCTATTTTTAAGTGAGTAAATGAATTGTACATGAACTGCAGCAGCTGCCTGTGAATCCTCAGGATCCTTGTCAGACTGAGGATGATATGCTTTTCTCTACACATACAATAGAACTAGAACACTATGTCTGTGCTTCCACATGCCTCTATGCCCCAGCCAGGGAGGAATGCAAAACCTTCCCTAATGACGTGCTTTGGATTTTTGTTAATCTGTAAACCAAGAAGTAAAATCTAGTGTAATTTGG
>XM_036941251.1
CACAGTCAAGTCCCTCCCCCTGCCGATTCGCATCGTTGTAGACTGATATCAAAGATGGCGACTGGAACCGCGTAAATTGGTGATTCCGGAGAGTGACACAGAGAGACGAGCAAGCCTGttgaggagaaaagagagatcaTGGCTTTTGAGGAGATCAAGAAGAAAGGAGTAGTTGAGGTAGGGATGGAAGGGGAAGTGGGCCTTGTGGCTGGTcgcagtcagagagagaagaggagatcatACAAGGACCTgctcagagaggaggaggagattgcTGCACAGGTCCGCAAGTCCTCCAAGAAACGGCCCAAGGACTCAGAACCTTTCTTATTGGGAGGGGACTCccacaagaagaagaaaaagcacAGTGAAGACTACTATTACAGAGACCAGCAAGGCTCAGGCCCACCTCCCCACAAGAAGAAGCGAAAGTCGTCAGACCACTCCCCTTCCctgtcctcctcatcttcctcccatCCCACAGACACAGCCATGGGGCTCCTACAGGCCATCACCTCCCCAATGGCCACCGGCTCAGACCCGAGCCCACACCTGCACAAGAAGCCCTCCtacccctccttctcttcctcccactTCTCCAAAGACCGCAAACGTGATGGGAGCACCGGAGGAAGCAAAGGCAGCCACTCCTCTCATTCCCGTCCTatgtcctcatcctcctcttccaaaAAGCACTCCTCCAAGTCGTCGTCTCTGTTCCAtggtggtaccggtacccctaAAGGAGATCTCCTGAACATACGTGAGCCGGATGGGCTGAGGATGAAGCTCATGGTCTCGCCTAAGGAGAAGGCCGAAGGAGAGGGctttcccttccctccccactcctcctcatcctcaaaaggggggataaaaaaggagaaggacagagaccgGAAGCAGCTCTCTAAAGTCCCCAAGAAGATGCAGCAGAGCCGAGATCCACTGCCTGTTGTGGGGAAAGAAGTGGAGGTGGAGGGGCACTACGGTGAGGGTATGGGGGGAGACAGCTCCTCCTCGGGGGGCGAACTGGAGGCAGGAGAGCTGGTGATAGACGACTCGTACAAGCATCTGtcaaagaaaaagaagaagagcaAGAAAAGCAAGAAgaaaaaggagaaagagaaggacagggAGAAAGACAAAGGCGGGAGAGAGAAGAAGCACAGCAAAGGATCAGGAGGGGACCCATCGAGAGGCCACACCCATACCCATGGCTCAGCCAATCATTCTGCAGCTGGTGGAATGTATGCCATGGGGGCCCCCATCCCTACTCCCATCCTTACTCACCATCATCAAAGTAATGAAGTTGCAATgatggagaagaagaaaaagaaggaggagagggaaagggaaaagcACGAGAAGGAGAAAGATAAGccCAAGAAGAAGAACACAACAGCGTACCAGGTGTTCTGTAAAGAGTACAGGGTCAACATCAATGCAGAGCAGCCGGGACTAGAGAAAGACTTTACTGTGTTTGCAGTGTTCGGGGAGCTGAGCAAAAGGTTGGCAGAGGTGTGGAAACAGCTCCCAGAAAAAGATAAACTGGTGTGGAAGCAGAAAGCTCAGTACCTGCAGCACAAGCAGAACAAAGCTGAGGCCACCACAGTCAAACGCAAGAGCTCCACAGATGGAGTCAAAAGCAAAGGCTCTATGAAGGGCATGGGGCTGGCAGCAGGACTGGTGTCCCCCAACCGGGCGTCTGTGGGTGTGTCCCTGTCACCAGCACGGGTCCCTGATGTCGACCCCATCGATGCGGCTGCCCACCTACAGCTACTGGGAGAGTCCCTGTCCCTCATCGGCCACCGATTACAAGAgacagagGGGATGGTGGCGGTGTCAGGCAGTCTCTCTGTACTGCTGGACTCCATCTTGTGTGCCCTGGGACCCCTGACCTGCCTCACAGCACAGATCCCCCAGCTCAACGGATGTCCCCGCCAAGTCTTGtccaacaccttggacaacatTGCCTACATCATGCCAGGGCTGTGAAGCCAACATAAACATTCCTTTCCCGTCTACTGAGTGTCCTCGCCATGAAGTAAAACGTTTGGAGTGAGAGTGCCCATTATAGAAGCGTGGCTTGTGGCTTGGGATGCAGACAATTATTTATGcagcaaggcattggaaaacgtgGATATTAATACTTTcaacatgtttttaaaatgtattttaaaatgcgTTCATTtccttattattattttttttactgaaacCTATTTTAATGAACACTCTTTTCTTTCCCTCTGGCATGTCTGTTAGCGTCTTCAGATTTAACTGTATGTTCTTGTGTGAATGTGTGCGGGCGTGTGTGTTTTCTATGTGTATACAGTATCTCCAGAGGCTAGTTTTTACTCAAAAGGACAAGCCAGGGCCCaagtccaccattgttcctcttCCATCAACATACCATGAAAATAATATATTTGACAACTGTTCATGTTTGTTTTACCAGTTAATTACATAATGACTTGTTATTTTGTATATATGCTATTTTACTGAGTATTAAGGTTTAGATTTTGATTGTAGAATGAAATTTGTATACGGTAGAAACATTTTGAGGCAACTGCAATCAAACTACTGTTGTGGGTTTTGCAGCTTTTGAAGCACAAAGCTGTAAGCCACATTTTCATGAATACATCTCTTCCTATGAGTATACAGTATGGAAATGTTGACAATAAAAATGACAGTGTCAACATGCAGACTGAGCATAGCAGACTTATATGACTGGTATGTACCACCACCACCTTCTTTCAACTACAGACTCCTAAACACAAACCAATGAATGAATAAGGCTTGTATTTATTGTAACAAACCATTGTAGTGTATCAAGATAATTTACATTTTAAGGCCAGTTATACCTACAACTGAAATTGCTATTTTTAAGTGAGTAAATGAATTGTACATGAACTGCAGCAGCTGCCTGTGAATCCTCAGGATCCTTGTCAGACTGAGGATGATATGCTTTTCTCTACACATACAATAGAACTAGAACACTATGTCTGTGCTTCCACATGCCTCTATGCCCCAGCCAGGGAGGAATGCAAAACCTTCCCTAATGACGTGCTTTGGATTTTTGTTAATCTGTAAACCAAGAAGTAAAATCTAGTGTAATTTGG

Function

NR:

description
HMG box-containing protein 4-like isoform X1

GO: NA

KEGG:

id description
K11298 HMG2L1; high mobility group protein 2-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941252.1 False 3168 mRNA 0.48 13 45136756 45142885
XM_021558204.2 False 3098 mRNA 0.48 13 45136756 45143108
XM_036941251.1 True 3122 mRNA 0.48 13 45136756 45143108

Neighbor

gene id symbol gene type direction distance location
LOC110486532 LOC106607051 coding downstream 1111 45133029 ~ 45135645 (-)
il-8 il-8 coding downstream 49666 45085269 ~ 45087130 (-)
LOC110486528 LOC106607047 coding downstream 102351 45029764 ~ 45034405 (-)
LOC110486524 LOC106607044 coding downstream 177096 44955574 ~ 44959660 (-)
LOC110486521 rbp coding downstream 272530 44856937 ~ 44864226 (-)
ankrd54 LOC106607054 coding upstream 220 45143328 ~ 45145991 (-)
LOC110485190 LOC106601322 coding upstream 5456 45148564 ~ 45150974 (-)
LOC110486535 mcm5 coding upstream 11618 45154726 ~ 45159515 (-)
gcat gcat coding upstream 16706 45159814 ~ 45165419 (-)
tom1 LOC106607057 coding upstream 23586 45166694 ~ 45174022 (-)
G1178980 LOC106601324 non-coding downstream 115009 45020298 ~ 45021747 (-)
G1178974 NA non-coding downstream 122011 45012785 ~ 45014745 (-)
G1178962 NA non-coding downstream 140753 44994826 ~ 44996003 (-)
G1178959 smarca4 non-coding downstream 146163 44988969 ~ 44990593 (-)
G1178946 LOC106607042 non-coding downstream 174873 44946191 ~ 44961883 (-)
G1179064 NA non-coding upstream 3356 45146464 ~ 45146663 (-)
G1179069 NA non-coding upstream 31831 45174939 ~ 45175366 (-)
G1179074 NA non-coding upstream 36253 45179361 ~ 45179568 (-)
G1179056 NA non-coding upstream 38316 45181424 ~ 45181741 (-)
pik3r6b NA non-coding upstream 58264 45200981 ~ 45213655 (-)
G1178996 NA other downstream 84732 45051576 ~ 45052024 (-)
G1178982 LOC106607046 other downstream 108143 45026515 ~ 45028613 (-)
G1178958 LOC106607010 other downstream 155556 44969210 ~ 44981200 (-)
G1178765 LOC100380669 other downstream 405405 44725639 ~ 44731351 (-)
zgc:171844 LOC106607059 other upstream 40352 45182660 ~ 45193315 (-)
G1179619 LOC106601391 other upstream 386328 45529436 ~ 45530114 (-)
G1179621 LOC106607015 other upstream 388750 45531858 ~ 45532662 (-)
LOC110486586 ubald2 other upstream 1370349 46510585 ~ 46535713 (-)
LOC110486590 LOC105022923 other upstream 1740320 46827752 ~ 46915018 (-)

Expression


Co-expression Network