ankrd54 (LOC106607054)


Basic Information

Item Value
gene id ankrd54
gene name LOC106607054
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45143328 ~ 45145991 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558207.2
CGAGAGAACGAACAACGTAGGCTCTGATTGGTAATAGTCATTGTCACCGTTTCTCTTTACAATAGGACCGCCTTTTACGGCTTGTTCTCGTGATAATTGAAATTATGAAACAGGAGACATTTTGGTTCTTGTAACAGGGACGTATCTTGAATTCAAACATGAACATATGAGCCACAATGGTAGATATGCGTAGAATCGTTTCTGTATTGATGTTCTAGAGCGAGCGATGGCAACGGAGAAAATAAACGACATATTCAAAGTTGCAAGTCAGTTCATCGACATAAATTACTCTTTTTGAAGCTCCTAGTACTGGCTTGCGAACGAGGATCATTTTGAAGAGCGAAACACGATAAATAAATCTTCCACATGAGTCGTTGAACATGGACGGGTGGAGTCCAATTGTTGCAAGAGCTTCTGACGATGAACGTTCAAGCTCCGAGGGTGAATACACGGTGGAGACTGGACCAAAAGAAGCGGAGGAGAAAGGGGGTGAACTAAAGATACATGATGAGAGGGTGGATGGAGGTGCTGCTGAGGGATTTGGGATAACTGGCTTTGGAGAGGGCACCGTGAGGTTGAGTCGTACAGGACAGACCGCTGAACAAGAACTTCGGTACCTCCACTTGCTATGGGAACCCAGTCGAGTTGGATTAGGTGCGGGTGTGGCGAGCAGCAAACCCGGGAAGGTGACAGGGTGTAGAGCGAGGCGACAAGGGAGAGCCCGGCGAAATGTGGGGCCCATTGGAAAAGATATTTATGCGGTGAAGAGGTTTCGAGAGGCTGCCAATGGCAACGACATTGATACAGTGCGCAGGCTTCTTCAAGAAGACGTAGACCCTTGTGCAGCAGATGACAAAGGAAGAACAGCCCTCCACTTCTCCTCCTGTAATGGCAACGAGAGCATCGTGCAACTTCTTCTGAGCTACGGCGCTGACCCTAACCAGCGGGATGGCCTTGGGAACACCCCTCTTCATCTGGCGGCCTGTACCAACCACGTGCCTGTAATCACCACATTGCTGAGAGGAGGCGCACGTGTGGATGCCCTAGACCGAGCAGGAAGGACCCCCCTGCACCTGGCACGCTCCAAACTCAACATCCTGCAGGAAGGAGACTCGAGGAGTATAGAAACTCTTAGAGGGGAGGTCACACAGATCATTCAGATGCTAAGGGAGTACCTGAATGTGATGGGACAGAGTGAGGCCAGAGAGAGACTGGATCATATCTCAACACAGCTGCAGCACACACGCACCAAAGAACAAGTTGATGAGGTAACCGACTTGCTGGCCAGCTTCACGTCACTCAGTCTACAGAAGCAGAATTTGGGGGATAGGTAGAGGGGGCTCTCTTTGTGGATACATTCTTCTGTTTACGGCGGAGTAATGGGCATACTACTGTGATAAAGTAAATAAAAAAGATCTTTATGAGCTCATTACCCTTGACTGTTGTGTTGGTCTTCCTCTCAGCATCTTTATGTCACTACCTTTTTTCTGTTGCCTTGCATGTGTTGTACATGaatgtttactgtaaaaaaaAGAATCATGGTCATTGTTGTAAATGGTTGTAACAATCTGAGTtaatggattaaaaaaatatttggaaATA

Function

NR:

description
ankyrin repeat domain-containing protein 54-like isoform X2

GO: NA

KEGG:

id description
K21442 ANKRD54; ankyrin repeat domain-containing protein 54

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558207.2 True 1602 mRNA 0.47 8 45143328 45145991

Neighbor

gene id symbol gene type direction distance location
LOC110486530 LOC106601319 coding downstream 220 45136756 ~ 45143108 (-)
LOC110486532 LOC106607051 coding downstream 7683 45133029 ~ 45135645 (-)
il-8 il-8 coding downstream 56238 45085269 ~ 45087130 (-)
LOC110486528 LOC106607047 coding downstream 108923 45029764 ~ 45034405 (-)
LOC110486524 LOC106607044 coding downstream 183668 44955574 ~ 44959660 (-)
LOC110485190 LOC106601322 coding upstream 2573 45148564 ~ 45150974 (-)
LOC110486535 mcm5 coding upstream 8735 45154726 ~ 45159515 (-)
gcat gcat coding upstream 13823 45159814 ~ 45165419 (-)
tom1 LOC106607057 coding upstream 20703 45166694 ~ 45174022 (-)
zgc:171844 LOC106607059 coding upstream 36669 45182660 ~ 45193315 (-)
G1178980 LOC106601324 non-coding downstream 121581 45020298 ~ 45021747 (-)
G1178974 NA non-coding downstream 128583 45012785 ~ 45014745 (-)
G1178962 NA non-coding downstream 147325 44994826 ~ 44996003 (-)
G1178959 smarca4 non-coding downstream 152735 44988969 ~ 44990593 (-)
G1178946 LOC106607042 non-coding downstream 181445 44946191 ~ 44961883 (-)
G1179064 NA non-coding upstream 473 45146464 ~ 45146663 (-)
G1179069 NA non-coding upstream 28948 45174939 ~ 45175366 (-)
G1179074 NA non-coding upstream 33370 45179361 ~ 45179568 (-)
G1179056 NA non-coding upstream 35433 45181424 ~ 45181741 (-)
pik3r6b NA non-coding upstream 55381 45200981 ~ 45213655 (-)
G1178996 NA other downstream 91304 45051576 ~ 45052024 (-)
G1178982 LOC106607046 other downstream 114715 45026515 ~ 45028613 (-)
G1178958 LOC106607010 other downstream 162128 44969210 ~ 44981200 (-)
G1178765 LOC100380669 other downstream 411977 44725639 ~ 44731351 (-)
G1179619 LOC106601391 other upstream 383445 45529436 ~ 45530114 (-)
G1179621 LOC106607015 other upstream 385867 45531858 ~ 45532662 (-)
LOC110486586 ubald2 other upstream 1367466 46510585 ~ 46535713 (-)
LOC110486590 LOC105022923 other upstream 1737437 46827752 ~ 46915018 (-)

Expression


Co-expression Network