hmox1a (LOC106607056)


Basic Information

Item Value
gene id hmox1a
gene name LOC106607056
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45152082 ~ 45154732 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558210.2
CTGGTAAATCTGCCCTGTCATGTTAAGCTTCAGCATAAGGGAAATGAGTCAACACTCTCACTTCCCATTTGATTTAGCTGACAAACATTGGGAGAGAAGGCAAGGGAGTCAAATATAAAGACTGGGACACAGGTTAAAGAGGACACAGAAACTCTAAACTCGTTTGAGAAGGAGGCAGCTTTCATTTACCAGCTGTATAACAAGACATCAACAAGGAAATACCCCACAGACATGGAGACAGTCAACTCGGGACAGAAAGATGATATGCAGAACCTTGGCAGgGATTTGTCAGAACAGATAAAAGCAGCGACTAAAGAGATCCATGTCAGGGCAGAAAACACCCAACTGATGCTGAGCTATCAGAAGGGACAGATAACTCTTCCGCAGTACAAGCTTCTTCTGTGTTCCCTCTATGAGATCTACAAAGCACTGGAAGAGGAGATGGATAGAAATGCTTCCCACCCAGGTGTCGCACCAATATACTTCCCCCAGGAACTGGCCCGACTGGAGACACTAGAGAGAGATCTGGAACACTTCTTTGGACAGGAGTGGCAAAAGAGAGTCATCATTCCTGCTgcaacacacagatatacacagagACTTCGCAAGATTGGTGAAAGCAATCCTAAATTGCTGGTGGCCCACGCCTACACCCGTTACCTAGGTGACCTGTCAGGAGGACAAATTTTGGGGAAGATTACCCAGAAGTCAATTGGGTTAAGCAGCGGAGAGGGACTGTCGTTTTTCTCCTTCCCCGGAGTGTCAAGCCCTAACCGCTTCAAGCAGCTGTACAGGAGCAGAATGAACAGCATCGAGCTGAccaaggaggagagggatggggtgCTGGAGGAGGCTATCATGGCCTTCGAACTCAACATCCAGGTCTTCAATGATCTACAGAAAATGTTGAGTGTCACAGAGGAAGCTTATGGGGACCAAGAAAAGGCCGAGACGCCAGCTACCATCCCCTCTTTGTCCATCGTGCAGTTGTCACTGGGTATTTGTGTTGCTTTAGCAACAGTCGGAATGGGTATCTATGTATTCTAAAGCCTTGAAATAAGTCTTAATGTAGTTGACAGAATCACTTCACTAGTCATAACCACCTAAGGGTGTGTGCATTTACAGCACTTGTCATGACTGTACTTTTACATGCTTAAGGCAATCTTAAAATGACAATCGACATGCTGTATTAATTGCAATTCTGTGTACATAGTACATTTCATTAAAGATGATGCACACCATTTCAACATAAGAAATGTCTAAATAAAGAA

Function

NR:

description
heme oxygenase-like

GO:

id name namespace
GO:0006788 heme oxidation biological_process
GO:0004392 heme oxygenase (decyclizing) activity molecular_function

KEGG:

id description
K00510 HMOX1; heme oxygenase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558210.2 True 1271 mRNA 0.45 7 45152082 45154732

Neighbor

gene id symbol gene type direction distance location
LOC110486534 NA coding upstream 11142 45135680 ~ 45140940 (+)
zgc:162612 LOC106607050 coding upstream 36935 45111643 ~ 45115147 (+)
LOC110486529 LOC106607046 coding upstream 123462 45026189 ~ 45028620 (+)
LOC110486527 LOC100286593 coding upstream 126489 45019307 ~ 45025593 (+)
LOC118938604 NA coding upstream 128788 45023197 ~ 45023294 (+)
LOC110486541 LOC106607062 coding downstream 68737 45223469 ~ 45268420 (+)
usp43b LOC106601383 coding downstream 204007 45358739 ~ 45451742 (+)
LOC110486545 grb2 coding downstream 330066 45484798 ~ 45524322 (+)
trnas-aga-61 NA coding downstream 372073 45526805 ~ 45526886 (+)
LOC110485192 LOC106601391 coding downstream 374666 45529398 ~ 45554103 (+)
G1178617 NA non-coding upstream 4100 45146223 ~ 45147982 (+)
G1178555 NA non-coding upstream 50261 45066398 ~ 45101821 (+)
G1178587 il-8 non-coding upstream 64874 45085263 ~ 45087208 (+)
G1178554 NA non-coding upstream 100718 45051164 ~ 45051364 (+)
G1178549 NA non-coding upstream 106880 45044951 ~ 45045202 (+)
G1178630 NA non-coding downstream 11318 45166050 ~ 45166423 (+)
G1178631 NA non-coding downstream 12544 45167276 ~ 45168172 (+)
G1178655 NA non-coding downstream 39273 45194005 ~ 45194242 (+)
G1178658 NA non-coding downstream 45493 45200225 ~ 45201070 (+)
LOC110486526 smarca4 other upstream 182363 44967368 ~ 44996127 (+)
LOC110485188 LOC106601310 other upstream 225765 44878675 ~ 44943951 (+)
G1178425 NA other upstream 287899 44859869 ~ 44864183 (+)
G1178363 NA other upstream 483623 44668068 ~ 44668459 (+)
LOC110486491 LOC106607082 other upstream 946512 44174050 ~ 44211083 (+)
G1179156 NA other downstream 157598 45312330 ~ 45313033 (+)
G1179362 NA other downstream 307856 45462588 ~ 45462943 (+)
LOC118936304 LOC106601427 other downstream 1019296 46173911 ~ 46176562 (+)
G1180047 NA other downstream 1084412 46239144 ~ 46273601 (+)

Expression


Co-expression Network