LOC110486535 (mcm5)


Basic Information

Item Value
gene id LOC110486535
gene name mcm5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45154726 ~ 45159515 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558209.2
CCAATGGCAAAGCGTCACTGTTCGACTTCGCGGGAAAGTGACGAATTTTATTTGCCGCGAAAGAGTCAGCGTGGAATTCATTGTCCACAGAAGATCATTGACGTCAATCACCAAAAACGGTTGCTTTTAGGATTATTAAACATAATCTATAGCACTTTGTAGATATAATCGGTGCATTATGTCTGGTTTCGACGACCCTGGAGTTTATTACAGTGACAGCTTCGGCGGTGGAGATGGACCCGGGGATGAAGGTGGAGTGAAACGGAGCCAGATCAAGAAACGATTCCGTGAATTTCTTCGGCAATTCAGAGTTGGGACCGACCGCACCGGTTTCACCTATAAATACAGAGATGACCTTAAGAGACACTACACCCTGGGGGAgtactgggtggaggtggagatggaaGACCTGGCCAGCTTTGACGAGGACCTGTCAGACTGCCTGTACAAGCTGCCCTCTGAGAACCTGCCGCTGCTGGAGGAGGCTGCCCAGGAGGTGGCTGATGAGGTGACCCGTCCCAGGCccctgggagaggagacagtgcAGGAAATCCAGGTCATGCTGAAGAGTGATGCCCATCCTGCCTCCATCCGCAACCTCAAGTCGGAGCAGGTGTCCAGGCTGGTGAAAGTCCCTGGGATTGTCATCTCTGCCACGGCTGTGCGGGCCAAGGCCACCAGGGTGTGTTTGCAGTGTCGTGGCTGTCGTTCCGTCATCAGTAACATCTTCATGCCCCCAGGCCTGCAGGGCTACGCTCTTCCCCGAAAGTGCAACACtgagcaggcaggcagggtgaGGTGTCCTATAGATCCCTACTTCATCATTCCAGACCGTTGTGTCTGTGTGGACTTCCAGACCCTCCGTTTGCAGGAGTCTCCAGATGCTGTGCCACACGGAGAGATGCCCCGCCACCTGCAGCTCTACTgtgacagGTACCTGTGTGACCGTGTGGTCCCTGGGAACAGAGTGACCATTATGGGGATCTACTCCATCAAGAAGGTGGCCCAAGCTAAGGGCAAGGGCAGAGATAAAAGTGCAGGTGTGGGCATCCGCTCCTCCTACCTCCGTGTGGTGGGCATTCAGCAGGACACAGAGGGAGCAGGTCGTGGGGCCACAGGGTCAGTCTCCcctcaggaagaggaggagctgaGAGCGTTGGCCTCCTCCCCCGACGTCTACGGCTCCCTCTCCCGTTCCCTCGCTCCTTCCATCTACGGCAGTGATGACCTGAAAAAGGCCATCGCCTGCCTGCTGTTCGGCGGCTCCAGGAAGAGGCTGCCTGACGGGCTGACCCGTAGAGGAGACATCAACTTGCTAATGCTGGGAGACCCCGGTACTGCTAAGTCTCAGCTGCTCAAGTTTGTGGAGAGGTGCTCTCCCATTGGGgTGTATACCTCAGGTAAAGGCAGCAGTGCTGCTGGTCTGACGGCCTCTGTCCTGAAGGACCCCGTCACCCGTGGCTTCATCATGGAGGGAGGAGCCATGGTGCTGGCTGACGGTGGGGTGGTGTGCATCGATGAGTTTGACAAGATGAGAGAGGATGACCGAGTAGCCATCCATGAAGCCATGGAGCAACAGACCATCTCCATTGCCAAGGCTGGCATCACCACCACCCTGAACTCCCGCTGCTCGGTGCTGGCCGCTGCTAACTCTGTGTTTGGCCGTTGGGACGACACCAAGGGAGAGGACAACATCGACTTCATGCCTACCATCTTGTCCCGTTTTGACATGATCTTTATCATCAAGGACATTCACGACCATCAGAGAGACATGaCTCTGGCCCGCCACGTGATGAACGTCCATCTCAGTGCTCATACTCAGACGGAGGGTGTGGAGGGAGAGATCACACTGGCCACACTGAAGAAGTACATTGCCTATGCCAGAACGAAATGCGGCCCACGTCTGTCTGCGGCGGCAGCTGAAAAGCTGAAGAACAGATACGTGGTGATGAGGAGTGGAGCGAGGGAACATGAGAGGGAGAGCGACAGGAGAGCCTCCATCCCCATCACTATCAGGCAGCTGGAGGCGGTGGTGCGCATCTCTGAGtccctggccaagatgaagctgCAGGCCgtggctggagaggaggaggtggacgaGGCCCTGCGGCTCTTCCAGGTGTCCACACTGGACGCTGCGCTGTCCGGCAGCCTCTCGGGTGTGGAGGGCTTCACCACTCAGGAGGACCAGGAGATGATTTCCCGTGTTGAGAAGCAGCTGAAGAGACGCTTTGCCATTGGCTCCCAGGTGTCCGAGCACAGCATCGTCCAGGACTTCACCAAGCAGAAGTATCCAGAGCAGGCCATCTACAAGGTCCTTCACCTGATGATGAGGAGGGGAGAGCTTCAGCACCGCATGCAGAGGAAGGTGCTCTACAGAGTCAAGTAGTCTCTCAAAAAGATGCATACGCACTAAGATTAAGTCACGTTGGGCTTTGTAAATAGTAGAAGGGACAGGCGTCTCCTCAATTCACTCTTCCTCACAAGCCAGTGGACGTCTTCATGAAGTCACGTCGATACGTCTTCATCTTAGACCACAGAGCCACTGATGTCTACCTTTTCATGTGTTGCTTTGCCAAGTTATGCCAACAACCGTTATTTACTGTTCTATTGCTCTCATAAGTATTTTGGGGTCTATTCTTTTTAGTCTTAACAAATTATGGAGGCAATTTGGATGAACTGTATTGTTGAATTGTTTGGGGCAAGAGAAGCGTTATGAGACTGTCCTAAAGATTGTTAATGTTAAATCATTACTTGTGGAAGGTATTTTGTATTGAAAATAAATGGCAAACTTCTTTA

Function

symbol description
mcm5 Predicted to enable single-stranded DNA binding activity. Predicted to contribute to 3'-5' DNA helicase activity and single-stranded DNA helicase activity. Acts upstream of or within chordate embryonic development; mitotic cell cycle; and negative regulation of apoptotic process. Predicted to be part of MCM complex. Predicted to be active in nucleus. Is expressed in several structures, including endoderm; head; nervous system; pronephric duct; and tail bud. Human ortholog(s) of this gene implicated in Meier-Gorlin syndrome 8. Orthologous to human MCM5 (minichromosome maintenance complex component 5).

NR:

description
DNA replication licensing factor mcm5-like

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0006270 DNA replication initiation biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0009790 embryo development biological_process
GO:0042555 MCM complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function

KEGG:

id description
K02209 MCM5, CDC46; DNA replication licensing factor MCM5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558209.2 True 2799 mRNA 0.54 14 45154726 45159515

Neighbor

gene id symbol gene type direction distance location
LOC110485190 LOC106601322 coding downstream 3752 45148564 ~ 45150974 (-)
ankrd54 LOC106607054 coding downstream 8735 45143328 ~ 45145991 (-)
LOC110486530 LOC106601319 coding downstream 11618 45136756 ~ 45143108 (-)
LOC110486532 LOC106607051 coding downstream 19081 45133029 ~ 45135645 (-)
il-8 il-8 coding downstream 67636 45085269 ~ 45087130 (-)
gcat gcat coding upstream 299 45159814 ~ 45165419 (-)
tom1 LOC106607057 coding upstream 7179 45166694 ~ 45174022 (-)
zgc:171844 LOC106607059 coding upstream 23145 45182660 ~ 45193315 (-)
LOC110485191 LOC106601377 coding upstream 35196 45194711 ~ 45195977 (-)
pik3r6b NA coding upstream 41466 45200981 ~ 45213655 (-)
G1179064 NA non-coding downstream 8063 45146464 ~ 45146663 (-)
G1178980 LOC106601324 non-coding downstream 132979 45020298 ~ 45021747 (-)
G1178974 NA non-coding downstream 139981 45012785 ~ 45014745 (-)
G1178962 NA non-coding downstream 158723 44994826 ~ 44996003 (-)
G1178959 smarca4 non-coding downstream 164133 44988969 ~ 44990593 (-)
G1179069 NA non-coding upstream 15424 45174939 ~ 45175366 (-)
G1179074 NA non-coding upstream 19846 45179361 ~ 45179568 (-)
G1179056 NA non-coding upstream 21909 45181424 ~ 45181741 (-)
G1179106 NA non-coding upstream 107818 45267333 ~ 45268407 (-)
G1178996 NA other downstream 102702 45051576 ~ 45052024 (-)
G1178982 LOC106607046 other downstream 126113 45026515 ~ 45028613 (-)
G1178958 LOC106607010 other downstream 173526 44969210 ~ 44981200 (-)
G1178765 LOC100380669 other downstream 423375 44725639 ~ 44731351 (-)
G1179619 LOC106601391 other upstream 369921 45529436 ~ 45530114 (-)
G1179621 LOC106607015 other upstream 372343 45531858 ~ 45532662 (-)
LOC110486586 ubald2 other upstream 1353942 46510585 ~ 46535713 (-)
LOC110486590 LOC105022923 other upstream 1723913 46827752 ~ 46915018 (-)

Expression


Co-expression Network