tom1 (LOC106607057)


Basic Information

Item Value
gene id tom1
gene name LOC106607057
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45166694 ~ 45174022 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558212.2
TTTTTGCGAGAACTCCTCTGCTGTGGAAACGACTGAAGCGCAGTTCTGGATTTTGGTTTGACTGGTAGAAAGAAGGATGGAGTTTCTGACAGGGAACCCGTTTACTACACCGGTGGGCCAGCGAATAGAATATGCAACCAGCTCCAGTCTCCAGTCGGAGGACTGGGCCCTCAACATGGACATCTGTGACATCATCAATGAGACAGAGGAGGGGCctagagatgcatacaaagcaaTAAAGAAGAGGATTGTTGGAAACAAGAACTTCAGAGAGGTCATGCTGGCATTGACTGTACTGGAAGCGTGTGTGAAGAACTGTGGCCACAGGTTCCATGTGCTAGTCTCAACCAGGGAGTTTGTTGAGGGGGTTCTTGTCAGGTCCATCTTACCCAAGAACAATCCCCCTCTGGTCCTGCATGACAGAGTGCTCAGCCTTATACAGGCATGGGCAGACGCATTCCGCAGCTCACCAGCTCTGACGGGCGTGGTCTATGTGTACGAGGACCTGAGACGGAAAGGACTGGAGTTCCCCATGACTGAACTAGACGGATACTCCCCCATTCACACTCCAAATAGGACTGTGCCTGATAACGGGCCTGTCACTGTATCTGCTGCACCCTCATCCCCCAGGCCTGTCCCCATATCACCACAGCTTCCTGCATCCCAACAGAGCGAGCAGGGACCCCTCACCTTCACACCTTATCAGGTTAAAAAGTTGAAGACCGACCTGGGAGTGGTTCGAGGTAACCTGACAGTGATGTCAGATATGATGTCTCAACTGGATCCAGCAACAGCCAAGCATTCAGACACAGAGCTGCTTCAGGAGTTGTATGCAGCATGTAAAGACATGCAGGATAAGATAATGGAGCTAGTCCCAAGACTCAGTGAGGAGAAACTGACCGAGGAGCTGCTGGTTGCAAATGATGAAATCAATGCCACATTCACTCGCTACCAGAGGTTTCAGAGACAAAGAGCTACACAGCAGAGCCCAACCTACGTCAACCTTATTGACCTCAGCGCAGCAATCAAGCCTGTTGTTACAGCTCCCACCCACAGCCATCTCAGCCGATCAACAGTGGACACAGTGTCTAGTCAGATGACAGGACTCAGTATGAGGGAATTCGATGAATTTGCACAGAACAGGAGCATCTCACAGACACAACTGAGACCGAGTGAGCGGAATGAAGGTGTTGCCGACAGTCTGGCTCAAGCACAGAACACCAGATTACAGAACACTGGAACGGGTGACAGCCCAGACATCACCCCCCTCAGCTCCTCGACACAGTTTGATTGGATGATGGAAAAGGGAATGATCCCTGTGAGTCAGACGTCTGTGATGGATGACATTGAGAAGTGGCTGGATGTGGACGAGGAGGACGACATGGCTGATTCAGAGGGTGTGACAAGTGAGGAGTTTGACAGGTTTCTGGCAGAAAGAGTGAGAGCAGCGGAGCGACTCCCGTCCCTGAAAGCTTTTTCTCGTGACGACAACAACCACTCAGAAAAATAGGCCAAGCCGCAACCTGTCACATAACCAATGCCATTTTCCCAAATAGTGTGAGGACTGAACTGGATGAATGTATGATTGGCACATACAGTGAGTAAATGACTGGTGGGAACAACAACTCCTGACAATAGGGTTGTGCTACTGACACTCAGGTACACTACAGAACTACTTTATGTTCAACTCTCCTGGGTTAAGGTCTTCATCTAGTACGTTTAATGTATATTTTTATGTTAAGGCTAAATTAACTTGGACCAAGTGTTTTTAACTTACACTAAGAGTGTTTTATGATAAGAACTTAAGTCGTCCAGTGCCACTATAAATATGGATATCCAgttgaggaggctggtgggaggagctataggaggattgGCTTATTATAATGAATGGAATGTAGTCGAACATGTGGTTTCCTTATGTTTGGTacggttccatttattccattctagACATtataatgagcctgtcctcctatagctcctcccaccagcctctggTATGGCTGCGGATACAAACATTTGCACAATGATTGAGTTTAATTCCTGTTATGTTTCTTAGAAGAGAATGGAATATGCCCAATATTTTCAGATGAACATTGAATGGTGTGCATTCCAGAAAATGCAGGCATGATAAACACAATGTTAGTAGATTGCCATATAATATAATTAGGGGAAATGTATTATGTGATGCTCATGATGAATCCCATTTGTAATACAGAACACTTTTGGGAAGAGCAATACGAACCTAATTGTTTCTGGAGTACTTGAAGTTTATCAAATGTTACACAATGTCAGtcaagaacttgttctcaactggcctacctggttaaataaaggtgaaataaaatatgtTAACATTAAACACAGATGAAGTCTTAAAGATAGTTTGCTTTTATTCACTCTGGGAGATGAGGAGCTCAGCGTGTGGTCTGATTTCATGGTTCTGCAAATTTGACTGTTTTCTGTGTTTAGTGGAATTATGGTATACCAATTTTACAGTCTGTGACTGTGAATAACACAGGTTTTGCAGTTTCCAATGTCATTTAGAAAAGCATGTTGAATCTGTCAAGTACTTACAGGAGTGATAATGCTTTTGTCATATCAACTTTTTAAAGGTGTCTGAAGAAACTGGGATGCCATAACTTTTACAAGGAACAGCGAAGTGCTGAGAGGAGTTCCAAACAGCTGGGGCAAGGGGAAGTTGAGCTATGTATTTTTTCCTGATATAAGGAACGTGCCTAAAACCAAAGTATGGAAGAGGCAATTTAGAAATGCGTTGTGAAGCATAAACTAGGCCACTGTTTGGTTCTCTGAAATACTGCATTTTGATCTGTAAATCTCTATTCTGCATGGTATCTAAActatactgaactaaaatataattgaaaattt
>XM_021558214.2
TTTTTGCGAGAACTCCTCTGCTGTGGAAACGACTGAAGCGCAGTTCTGGATTTTGGTTTGACTGGTAGAAAGAAGGATGGAGTTTCTGACAGGGAACCCGTTTACTACACCGGTGGGCCAGCGAATAGAATATGCAACCAGCTCCAGTCTCCAGTCGGAGGACTGGGCCCTCAACATGGACATCTGTGACATCATCAATGAGACAGAGGAGGGGCctagagatgcatacaaagcaaTAAAGAAGAGGATTGTTGGAAACAAGAACTTCAGAGAGGTCATGCTGGCATTGACTGTACTGGAAGCGTGTGTGAAGAACTGTGGCCACAGGTTCCATGTGCTAGTCTCAACCAGGGAGTTTGTTGAGGGGGTTCTTGTCAGGTCCATCTTACCCAAGAACAATCCCCCTCTGGTCCTGCATGACAGAGTGCTCAGCCTTATACAGGCATGGGCAGACGCATTCCGCAGCTCACCAGCTCTGACGGGCGTGGTCTATGTGTACGAGGACCTGAGACGGAAAGGACTGGAGTTCCCCATGACTGAACTAGACGGATACTCCCCCATTCACACTCCAAATAGGACTGTGCCTGATAACGGGCCTGTCACTGTATCTGCTGCACCCTCATCCCCCAGGCCTGTCCCCATATCACCACAGCTTCCTGCATCCCAACAGAGCGAGCAGGGACCCCTCACCTTCACACCTTATCAGGTTAAAAAGTTGAAGACCGACCTGGGAGTGGTTCGAGGTAACCTGACAGTGATGTCAGATATGATGTCTCAACTGGATCCAGCAACAGCCAAGCATTCAGACACAGAGCTGCTTCAGGAGTTGTATGCAGCATGTAAAGACATGCAGGATAAGATAATGGAGCTAGTCCCAAGACTCAGTGAGGAGAAACTGACCGAGGAGCTGCTGGTTGCAAATGATGAAATCAATGCCACATTCACTCGCTACCAGAGGTTTCAGAGACAAAGAGCTACACAGCAGAGCCCAACCTACGTCAACCTTATTGACCTCAGCGCAGCAATCAAGCCTGTTGTTACAGCTCCCACCCACAGCCATCTCAGCCGATCAACAGTGGACACAGTGTCTAGTCAGATGACAGGACTCAGTATGAGGGAATTCGATGAATTTGCACAGAACAGGAGCATCTCACAGACACAACTGAGACCGAGTGAGCGGAATGAAGGTGTTGCCGACAGTCTGGCTCAAGCACAGAACACCAGATTACAGAACACTGGAACGATCCCTGTGAGTCAGACGTCTGTGATGGATGACATTGAGAAGTGGCTGGATGTGGACGAGGAGGACGACATGGCTGATTCAGAGGGTGTGACAAGTGAGGAGTTTGACAGGTTTCTGGCAGAAAGAGTGAGAGCAGCGGAGCGACTCCCGTCCCTGAAAGCTTTTTCTCGTGACGACAACAACCACTCAGAAAAATAGGCCAAGCCGCAACCTGTCACATAACCAATGCCATTTTCCCAAATAGTGTGAGGACTGAACTGGATGAATGTATGATTGGCACATACAGTGAGTAAATGACTGGTGGGAACAACAACTCCTGACAATAGGGTTGTGCTACTGACACTCAGGTACACTACAGAACTACTTTATGTTCAACTCTCCTGGGTTAAGGTCTTCATCTAGTACGTTTAATGTATATTTTTATGTTAAGGCTAAATTAACTTGGACCAAGTGTTTTTAACTTACACTAAGAGTGTTTTATGATAAGAACTTAAGTCGTCCAGTGCCACTATAAATATGGATATCCAgttgaggaggctggtgggaggagctataggaggattgGCTTATTATAATGAATGGAATGTAGTCGAACATGTGGTTTCCTTATGTTTGGTacggttccatttattccattctagACATtataatgagcctgtcctcctatagctcctcccaccagcctctggTATGGCTGCGGATACAAACATTTGCACAATGATTGAGTTTAATTCCTGTTATGTTTCTTAGAAGAGAATGGAATATGCCCAATATTTTCAGATGAACATTGAATGGTGTGCATTCCAGAAAATGCAGGCATGATAAACACAATGTTAGTAGATTGCCATATAATATAATTAGGGGAAATGTATTATGTGATGCTCATGATGAATCCCATTTGTAATACAGAACACTTTTGGGAAGAGCAATACGAACCTAATTGTTTCTGGAGTACTTGAAGTTTATCAAATGTTACACAATGTCAGtcaagaacttgttctcaactggcctacctggttaaataaaggtgaaataaaatatgtTAACATTAAACACAGATGAAGTCTTAAAGATAGTTTGCTTTTATTCACTCTGGGAGATGAGGAGCTCAGCGTGTGGTCTGATTTCATGGTTCTGCAAATTTGACTGTTTTCTGTGTTTAGTGGAATTATGGTATACCAATTTTACAGTCTGTGACTGTGAATAACACAGGTTTTGCAGTTTCCAATGTCATTTAGAAAAGCATGTTGAATCTGTCAAGTACTTACAGGAGTGATAATGCTTTTGTCATATCAACTTTTTAAAGGTGTCTGAAGAAACTGGGATGCCATAACTTTTACAAGGAACAGCGAAGTGCTGAGAGGAGTTCCAAACAGCTGGGGCAAGGGGAAGTTGAGCTATGTATTTTTTCCTGATATAAGGAACGTGCCTAAAACCAAAGTATGGAAGAGGCAATTTAGAAATGCGTTGTGAAGCATAAACTAGGCCACTGTTTGGTTCTCTGAAATACTGCATTTTGATCTGTAAATCTCTATTCTGCATGGTATCTAAActatactgaactaaaatataattgaaaattt
>XM_021558215.2
TTTTTGCGAGAACTCCTCTGCTGTGGAAACGACTGAAGCGCAGTTCTGGATTTTGGTTTGACTGGTAGAAAGAAGGATGGAGTTTCTGACAGGGAACCCGTTTACTACACCGGTGGGCCAGCGAATAGAATATGCAACCAGCTCCAGTCTCCAGTCGGAGGACTGGGCCCTCAACATGGACATCTGTGACATCATCAATGAGACAGAGGAGGGGCctagagatgcatacaaagcaaTAAAGAAGAGGATTGTTGGAAACAAGAACTTCAGAGAGGTCATGCTGGCATTGACTGTACTGGAAGCGTGTGTGAAGAACTGTGGCCACAGGTTCCATGTGCTAGTCTCAACCAGGGAGTTTGTTGAGGGGGTTCTTGTCAGGTCCATCTTACCCAAGAACAATCCCCCTCTGGTCCTGCATGACAGAGTGCTCAGCCTTATACAGGCATGGGCAGACGCATTCCGCAGCTCACCAGCTCTGACGGGCGTGGTCTATGTGTACGAGGACCTGAGACGGAAAGGACTGGAGTTCCCCATGACTGAACTAGACGGATACTCCCCCATTCACACTCCAAATAGGGTTAAAAAGTTGAAGACCGACCTGGGAGTGGTTCGAGGTAACCTGACAGTGATGTCAGATATGATGTCTCAACTGGATCCAGCAACAGCCAAGCATTCAGACACAGAGCTGCTTCAGGAGTTGTATGCAGCATGTAAAGACATGCAGGATAAGATAATGGAGCTAGTCCCAAGACTCAGTGAGGAGAAACTGACCGAGGAGCTGCTGGTTGCAAATGATGAAATCAATGCCACATTCACTCGCTACCAGAGGTTTCAGAGACAAAGAGCTACACAGCAGAGCCCAACCTACGTCAACCTTATTGACCTCAGCGCAGCAATCAAGCCTGTTGTTACAGCTCCCACCCACAGCCATCTCAGCCGATCAACAGTGGACACAGTGTCTAGTCAGATGACAGGACTCAGTATGAGGGAATTCGATGAATTTGCACAGAACAGGAGCATCTCACAGACACAACTGAGACCGAGTGAGCGGAATGAAGGTGTTGCCGACAGTCTGGCTCAAGCACAGAACACCAGATTACAGAACACTGGAACGGGTGACAGCCCAGACATCACCCCCCTCAGCTCCTCGACACAGTTTGATTGGATGATGGAAAAGGGAATGATCCCTGTGAGTCAGACGTCTGTGATGGATGACATTGAGAAGTGGCTGGATGTGGACGAGGAGGACGACATGGCTGATTCAGAGGGTGTGACAAGTGAGGAGTTTGACAGGTTTCTGGCAGAAAGAGTGAGAGCAGCGGAGCGACTCCCGTCCCTGAAAGCTTTTTCTCGTGACGACAACAACCACTCAGAAAAATAGGCCAAGCCGCAACCTGTCACATAACCAATGCCATTTTCCCAAATAGTGTGAGGACTGAACTGGATGAATGTATGATTGGCACATACAGTGAGTAAATGACTGGTGGGAACAACAACTCCTGACAATAGGGTTGTGCTACTGACACTCAGGTACACTACAGAACTACTTTATGTTCAACTCTCCTGGGTTAAGGTCTTCATCTAGTACGTTTAATGTATATTTTTATGTTAAGGCTAAATTAACTTGGACCAAGTGTTTTTAACTTACACTAAGAGTGTTTTATGATAAGAACTTAAGTCGTCCAGTGCCACTATAAATATGGATATCCAgttgaggaggctggtgggaggagctataggaggattgGCTTATTATAATGAATGGAATGTAGTCGAACATGTGGTTTCCTTATGTTTGGTacggttccatttattccattctagACATtataatgagcctgtcctcctatagctcctcccaccagcctctggTATGGCTGCGGATACAAACATTTGCACAATGATTGAGTTTAATTCCTGTTATGTTTCTTAGAAGAGAATGGAATATGCCCAATATTTTCAGATGAACATTGAATGGTGTGCATTCCAGAAAATGCAGGCATGATAAACACAATGTTAGTAGATTGCCATATAATATAATTAGGGGAAATGTATTATGTGATGCTCATGATGAATCCCATTTGTAATACAGAACACTTTTGGGAAGAGCAATACGAACCTAATTGTTTCTGGAGTACTTGAAGTTTATCAAATGTTACACAATGTCAGtcaagaacttgttctcaactggcctacctggttaaataaaggtgaaataaaatatgtTAACATTAAACACAGATGAAGTCTTAAAGATAGTTTGCTTTTATTCACTCTGGGAGATGAGGAGCTCAGCGTGTGGTCTGATTTCATGGTTCTGCAAATTTGACTGTTTTCTGTGTTTAGTGGAATTATGGTATACCAATTTTACAGTCTGTGACTGTGAATAACACAGGTTTTGCAGTTTCCAATGTCATTTAGAAAAGCATGTTGAATCTGTCAAGTACTTACAGGAGTGATAATGCTTTTGTCATATCAACTTTTTAAAGGTGTCTGAAGAAACTGGGATGCCATAACTTTTACAAGGAACAGCGAAGTGCTGAGAGGAGTTCCAAACAGCTGGGGCAAGGGGAAGTTGAGCTATGTATTTTTTCCTGATATAAGGAACGTGCCTAAAACCAAAGTATGGAAGAGGCAATTTAGAAATGCGTTGTGAAGCATAAACTAGGCCACTGTTTGGTTCTCTGAAATACTGCATTTTGATCTGTAAATCTCTATTCTGCATGGTATCTAAActatactgaactaaaatataattgaaaattt

Function

NR:

description
target of Myb protein 1-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558212.2 False 2895 mRNA 0.44 16 45166694 45174022
XM_021558214.2 False 2826 mRNA 0.44 15 45166694 45174022
XM_021558215.2 True 2766 mRNA 0.44 15 45166694 45174022

Neighbor

gene id symbol gene type direction distance location
gcat gcat coding downstream 1275 45159814 ~ 45165419 (-)
LOC110486535 mcm5 coding downstream 7179 45154726 ~ 45159515 (-)
LOC110485190 LOC106601322 coding downstream 15720 45148564 ~ 45150974 (-)
ankrd54 LOC106607054 coding downstream 20703 45143328 ~ 45145991 (-)
LOC110486530 LOC106601319 coding downstream 23586 45136756 ~ 45143108 (-)
zgc:171844 LOC106607059 coding upstream 8638 45182660 ~ 45193315 (-)
LOC110485191 LOC106601377 coding upstream 20689 45194711 ~ 45195977 (-)
pik3r6b NA coding upstream 26959 45200981 ~ 45213655 (-)
LOC110486542 LOC106608160 coding upstream 126711 45300733 ~ 45333032 (-)
mchr1b LOC106601409 coding upstream 306978 45481000 ~ 45484678 (-)
G1179064 NA non-coding downstream 20031 45146464 ~ 45146663 (-)
G1178980 LOC106601324 non-coding downstream 144947 45020298 ~ 45021747 (-)
G1178974 NA non-coding downstream 151949 45012785 ~ 45014745 (-)
G1178962 NA non-coding downstream 170691 44994826 ~ 44996003 (-)
G1178959 smarca4 non-coding downstream 176101 44988969 ~ 44990593 (-)
G1179069 NA non-coding upstream 917 45174939 ~ 45175366 (-)
G1179074 NA non-coding upstream 5339 45179361 ~ 45179568 (-)
G1179056 NA non-coding upstream 7402 45181424 ~ 45181741 (-)
G1179106 NA non-coding upstream 93311 45267333 ~ 45268407 (-)
il-8 il-8 other downstream 79564 45085269 ~ 45087130 (-)
G1178996 NA other downstream 114670 45051576 ~ 45052024 (-)
G1178982 LOC106607046 other downstream 138081 45026515 ~ 45028613 (-)
G1178958 LOC106607010 other downstream 185494 44969210 ~ 44981200 (-)
G1178765 LOC100380669 other downstream 435343 44725639 ~ 44731351 (-)
G1179619 LOC106601391 other upstream 355414 45529436 ~ 45530114 (-)
G1179621 LOC106607015 other upstream 357836 45531858 ~ 45532662 (-)
LOC110486586 ubald2 other upstream 1339435 46510585 ~ 46535713 (-)
LOC110486590 LOC105022923 other upstream 1709406 46827752 ~ 46915018 (-)

Expression


Co-expression Network