zgc:171844 (LOC106607059)


Basic Information

Item Value
gene id zgc:171844
gene name LOC106607059
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45182660 ~ 45193315 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558217.2
AATACATAGCCGACGTTCAACATGTATTCTCCACGTGGTGATGGTGTTTCCTTATGGCCACGTAAATAAATAGGCTGCGCCGTGTAATTACATTTTCAAATAGGCTAAAGTAGGCTAAGGGTATTTATCTGCTACTGATTTATCATTATCAAGCCTGAAGTCGTTCAAACCGAAGAAATGGAAAAGGAGCGAAAATCCTCCAAACAATATGGGTCTTTGGAACGAAGCAAATTGGATGGAAAAGCTGATAAGAAGGCAGAGGAAGACATTGTCTCAATGGCGGACTCCACCATCACTATAGATCACATTGAAGGGGAGCTTTTCAGAATCGAGCGGATACGTGATGTTCTAGTACGGAGGGAATCAGAACTAAGATACATGATGGACGACATTCAGCTTTGCAAGGAAATCACACGGCTGAAAAAAGAACTTCAGAAGCTGGTGTCTGTTTCAGACACAGACAAATCCAACGAGGACcggcagagggaggaggagttgCTGCAGCAGATCCACAAGCTGGTAGAGACCAGGGACTTCCTGGTGGATGACGTGGAGTTTGAGAGGCTCAGggagagagaggaggacaaagAAATGGCAGATTTCTTGCAGTCTAAATTCTCAAAGACCTCAAAGAAAAAAGATGTCACAGAGGACCGAAGGATGACCTCCAAAGCCCAGCAGACTTCGTCCACTCCCTTCGTCACCAAAACTGGTCTCACCCTTCTGAAGGAGTGTTGCGGCTTCACATGCTCTGTCATGTAGACTCCCTGCCCTGTGGAGAGACGGAGACACGTTGTTGGTTTCTGGATGGGGTTATTTGTGTTGAGTGGGCAGACAGAGCTCTCATACTTCGACTATAACCCTAAACATATGTACAGTGACGGTTGGGACTGTGTTCCCATCAATTAATGTATTGCTGGGTCATTGCACCAATTTAGTGCATTTTGAGAAGTGTAACAAAAAAAACTTTAGATTTCAGCAAATTTTTACATTCTGTAATATATATATGTCATATATATGACTGAGTCAAATAGGCTATAGATATGTCATATATATGACTGAGTCAAATAGGCTATAGATATGTCATATATATGACTGAGTCAAATAGGCTATATATATGTCATACATATGACTGAGTCAGATAGGCTATAGATATGTCATATATATGACTGAGTCAAATAGGCTATAGATATGTCATATATATGACTGAGTCAAATAGGCTATAGATATGTCATATATATGACTGAGTCAAATAGGCTATATATATGTCATACATATGACTGAGTCAGATAGGCTATAGATATGTCATATATATGACTGAGTCAAATAGGCTATAGATATGTCATATATATGACTGAGTCAAATAGGCTATAGATATGTCATATATATGACTGAGTCaaataggctatatacagtggggagaacaagtatttgatacactgctgattttgcaggttatcttacttacaaagcatg
>TU1344653
CGACGTTCAACATGTATTCTCCACGTGGTGATGGTGTTTCCTTATGGCCACGTAAATAAATAGGCTGCGCCGTGTAATTACATTTTCAAATAGGCTAAAGTAGGCTAAGGGTATTTATCTGCTACTGATTTATCATTATCAAGCCTGAAGTCGTTCAAACCGAAGAAATGGAAAAGGAGCGAAAATCCTCCAAACAATATGGGTCTTTGGAACGAAGCAAATTGGATGGAAAAGCTGATAAGAAGGAGGAAGACATTGTCTCAATGGCGGACTCCACCATCACTATAGATCACATTGAAGGGGAGCTTTTCAGAATCGAGCGGATACGTGATGTTCTAGTACGGAGGGAATCAGAACTAAGATACATGATGGACGACATTCAGCTTTGCAAGGAAATCACACGGCTGAAAAAAGAACTTCAGAAGCTGGTGTCTGTTTCAGACACAGACAAATCCAACGAGGACcggcagagggaggaggagttgCTGCAGCAGATCCACAAGCTGGTAGAGACCAGGGACTTCCTGGTGGATGACGTGGAGTTTGAGAGGCTCAGggagagagaggaggacaaagAAATGGCAGATTTCTTGCAGTCTAAATTCTCAAAGACCTCAAAGAAAAAAGATGTCACAGAGGACCGAAGGATGACCTCCAAAGCCC

Function

NR:

description
uncharacterized protein C16orf45 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558217.2 False 1476 mRNA 0.40 6 45182660 45193315
TU1344653 True 663 TUCP 0.45 6 45183460 45193305

Neighbor

gene id symbol gene type direction distance location
tom1 LOC106607057 coding downstream 8638 45166694 ~ 45174022 (-)
gcat gcat coding downstream 17241 45159814 ~ 45165419 (-)
LOC110486535 mcm5 coding downstream 23145 45154726 ~ 45159515 (-)
LOC110485190 LOC106601322 coding downstream 31686 45148564 ~ 45150974 (-)
ankrd54 LOC106607054 coding downstream 36669 45143328 ~ 45145991 (-)
LOC110485191 LOC106601377 coding upstream 1396 45194711 ~ 45195977 (-)
pik3r6b NA coding upstream 7666 45200981 ~ 45213655 (-)
LOC110486542 LOC106608160 coding upstream 107418 45300733 ~ 45333032 (-)
mchr1b LOC106601409 coding upstream 287685 45481000 ~ 45484678 (-)
trnas-aga-60 NA coding upstream 333274 45526589 ~ 45526670 (-)
G1179056 NA non-coding downstream 919 45181424 ~ 45181741 (-)
G1179074 NA non-coding downstream 3092 45179361 ~ 45179568 (-)
G1179069 NA non-coding downstream 7294 45174939 ~ 45175366 (-)
G1179064 NA non-coding downstream 35997 45146464 ~ 45146663 (-)
G1178980 LOC106601324 non-coding downstream 160913 45020298 ~ 45021747 (-)
G1179106 NA non-coding upstream 74018 45267333 ~ 45268407 (-)
G1179119 NA non-coding upstream 75729 45269044 ~ 45269384 (-)
G1179121 NA non-coding upstream 76577 45269892 ~ 45270099 (-)
G1179208 NA non-coding upstream 151900 45345215 ~ 45345426 (-)
il-8 il-8 other downstream 95530 45085269 ~ 45087130 (-)
G1178996 NA other downstream 130636 45051576 ~ 45052024 (-)
G1178982 LOC106607046 other downstream 154047 45026515 ~ 45028613 (-)
G1178958 LOC106607010 other downstream 201460 44969210 ~ 44981200 (-)
G1178765 LOC100380669 other downstream 451309 44725639 ~ 44731351 (-)
G1179619 LOC106601391 other upstream 336121 45529436 ~ 45530114 (-)
G1179621 LOC106607015 other upstream 338543 45531858 ~ 45532662 (-)
LOC110486586 ubald2 other upstream 1320142 46510585 ~ 46535713 (-)
LOC110486590 LOC105022923 other upstream 1690113 46827752 ~ 46915018 (-)
LOC110486593 LOC106606954 other upstream 2239481 47432406 ~ 47433949 (-)

Expression


Co-expression Network