LOC110486542 (LOC106608160)


Basic Information

Item Value
gene id LOC110486542
gene name LOC106608160
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45300733 ~ 45333032 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558230.2
caAAAGTGCATATTAGCTAACCCTTAACTATattcctaacctgctatgttaattctcatAACCTACGAAAAGTGAACtatgacaaaagctgtatccatCTAGTCAAAACCGAGTGGAAATATCAACCGGATGCTTcagatttatacatccggtgaaacatCTGGCTACTTGTTCTATCTGTGGCCATGTTGCACCAACGGGCTTACGGTGAAGTTATCTCAAAAATATGGTTTATACGGTTTCAAACAACACTGAGGTCGAGTTCGCAACAGGTTTGCGTCCGGCTTCTCCCCAGCCCTGGCTCTTTCTTCGACGAACCGGTGCACGTGAAGGTAGATGGACTTTCTCCCCACCAGAAAGTAGAGTTGAGGTCCAAACTCAAGGACGATAAAGGGGTCATTTTCAGAGCTTCCGCTCTGGTCGCTGCAGATGCTAGCGGACAGGTGGACCTgtgtcgctctccctctctgggcgGCAGCTACACGGGAGTTGAATCCATGGGCTTGTTTTGGGCCATGGCGGCCGAGACTCCACACAGCaaactgttaaaaaaaaatgttttgggttCAATGATGGTTGACATAGAAGTGCTGCATGGGGACACAGGTGAGCTCTTGGCCACAGAGACCAACGAGAGGCGGTTCATGACGGAAGGGGTAAGGAGAATACCGTTGGGCATGAAAGAAGGGAGAATTCGGGGAGTCCTCTTTCTACCACCCGGGCAGGGTCCATTCCCCGGTGTACTGGATGTGTATACTCTGGGTGGAGGTATATCAGAGGTCCGGGCCAGTCTGCTGGCTAACAAAGGCTTTGTGGTTCTGGCTCTGGCCTACTATGGCTTCCAGGACCTGCCCAGAACAGTGCCCAAATACTTTGACCTGGAGTACTTTGAAGAGGCTATCACTTTCCTGAGGCAACAGCCACAGGTACAGGGTCCAGGAATAGGAATCCTGTCCATCTCGAAGAGTGGGGATCTGGCTCTGTCCATGGCCTCTTTTCTCTCTGGCATCTCAGCCACAGCCTGGATCAACGGCAGCAACGCTAATACGGTGGTGCCACTGCACTACAAAGACCTCATCATCCCTTCCATCACGCCTATTGTTGAGAACGTCACCTTCTCCCCGTCCGGCATCCTTGACATCCGAGACGCCTTACCGGACCCAGAGACTGAGGTGAACCGCGGTTCCGTGATCCCAATAGAGCGTTCCAGTTCTAGGTTCCTCTTCGCCGCCTCTGAGGACGACAGGAACTGGAACAGCTGTCTCTTCGCCCAACAGGCCGCCGCCCGGCTGAGGCATCATGGGAAAGAGAACTTTGAGGTGGTGATGTACCCCAGGGCGGGGCATTTTCTGGAAGTACCCTACATGCCCCACTGCCCGTCTGGCTTCCATCCCGCGGTTGGTCAAGTGGTGGTGTTTGGGGGAGAGGCTAAAGCCCACCATCAGGCTCAGCTGGACCTGTGGAGGAGGGTCCAGGATTTCTTCAGGAAACACCTGAAGGGGAACAACACTGGCGAAAAAGCTACGTTAAATACTAGAGGATTACGCTCCACCATCCAGGCAAGCACACTCTCCTCTGCTTCTCCTTCCATGGCTCCTCCAAGAACAAGAATGAAGCAGATTTTGTGACCACAGTGTCAGCACAAATCCTGATGAATGAGCTCCCTGCTTGTTATGACTGACATGGGACTGTGGTCAAAGACAGAAGAAGATTGTTGCGGCTTTATGTCCCACCCGGGACGAAGAGGACTAGGTAGAGACACGTATGATTGGTCGTAATGTGTCAGGGACCTTCTCACAATGGTCTCACTGTGATTTTGTGAGTGTCAAGTTTAGTGCCCATTGACTCATGTCCTCTATTTATCCTGTCTTTATTTTAATAAAGACAGGTTTGATATTGTTGAGTCATATTGTTGGATGCAACAATGACAATTCAGCCCAGAAGATAAAACCTGAGGACAGTCAGAACACAGCAATTCCTGCAGATGGATGTGTAAAAAGACAGAAGAGGTGTAGGACAATAGGACACCATGTCGTCACTGAAATATCTAGATCAACAAAACATAGCCGGATCTTAAACTGATCCCCATAGAATTGAAAGTGAACAGACAAATCCGTCACACAGAACCCCTCAGTTTTAAGTCAGCCTAAACAGTGGTCTAAAAAGCACAGTGTGGGGTCTCTGTGTGCAGTGGTGACGTTACTCATGCTCGAGTAATCCAAGCTTTTTCCCCCTCTGATATCGTTGTTCAAGAACTATTTGAGGAACAGCGTGTTCATTGAAGATTAgccaggaaagagaggagacagggctCCCCCATTCTAAGACATTGTAGTTCCCCCTGCATGGGCAGCCGTGAGACATTCTCCTCTGTTTGACCCAGCTGATCTGGGCCTGTCCGGCAGCACTCCAGTGTGACCACAGGCTTTAGATGGGCCTGATTGGCTCAGCGGGTGGCTAATTGGATAAGCTTTTAATCTTCACACTATCTCCGCCCTGCTGGATCAGAGGCACAGGGAGGCAGAGATCAGTCCTTTGGTTTAATACTTAGTAAACATTTCAGGACTTAGTAAACATTATGGACAACAGAATCATGACTCACTAAAGATAACTAACAGGATGCATTCAGATGATAATGATTTAATCTGATTTGGGGACTGTGGATTATATGACCATTTTGACCTCATGTAAGCATATTTTTTAATCAGTATTTAGATTGGAATCAGACATAATTAAAATTAAATTAAGAGATTTAAACCAATCTGAAAGGACAATGTAGACAAGTGTTGAAGTCTCTGTTATTCTACTTGGATTGCCTCAATTTACATAAAGTCCACATACTGTGACATACAGTTGTTTTTTACCAAACCACAAATAAACTCTTTCTCATCTGGCTTCAATGGCCCTGCACTGCCTGTAGACTGTCATTCCAGCA
>XM_021558231.2
tcaAAAGTGCATATTAGCTAACCCTTAACTATattcctaacctgctatgttaattctcatAACCTACGAAAAGTGAACtatgacaaaagctgtatccatCTAGTCAAAACCGAGTGGAAATATCAACCGGATGCTTcagatttatacatccggtgaaacatCTGGCTACTTGTTCTATCTGTGGCCATGTTGCACCAACGGGCTTACGGTGAAGTTATCTCAAAAATATGGTTTATACGGTTTCAAACAACACTGAGGTCGAGTTCGCAACAGGTTTGCGTCCGGCTTCTCCCCAGCCCTGGCTCTTTCTTCGACGAACCGGTGCACGTGAAGGTAGATGGACTTTCTCCCCACCAGAAAGTAGAGTTGAGGTCCAAACTCAAGGACGATAAAGGGGTCATTTTCAGAGCTTCCGCTCTGGTCGCTGCAGATGCTAGCGGACAGGTGGACCTgtgtcgctctccctctctgggcgGCAGCTACACGGGAGTTGAATCCATGGGCTTGTTTTGGGCCATGGCGGCCGAGACTCCACACAGCaaactgttaaaaaaaaatgttttgggttCAATGATGGTTGACATAGAAGTGCTGCATGGGGACACAGGTGAGCTCTTGGCCACAGAGACCAACGAGAGGCGGTTCATGACGGAAGGGGTAAGGAGAATACCGTTGGGCATGAAAGAAGGGAGAATTCGGGGAGTCCTCTTTCTACCACCCGGGCAGGGTCCATTCCCCGGTGTACTGGATGTGTATACTCTGGGTGGAGGTATATCAGAGGTCCGGGCCAGTCTGCTGGCTAACAAAGGCTTTGTGGTTCTGGCTCTGGCCTACTATGGCTTCCAGGACCTGCCCAGAACAGTGCCCAAATACTTTGACCTGGAGTACTTTGAAGAGGCTATCACTTTCCTGAGGCAACAGCCACAGGTACAGGGTCCAGGAATAGGAATCCTGTCCATCTCGAAGAGTGGGGATCTGGCTCTGTCCATGGCCTCTTTTCTCTCTGGCATCTCAGCCACAGCCTGGATCAACGGCAGCAACGCTAATACGGTGGTGCCACTGCACTACAAAGACCTCATCATCCCTTCCATCACGCCTATTGTTGAGAACGTCACCTTCTCCCCGTCCGGCATCCTTGACATCCGAGACGCCTTACCGGACCCAGAGACTGAGGTGAACCGCGGTTCCGTGATCCCAATAGAGCGTTCCAGTTCTAGGTTCCTCTTCGCCGCCTCTGAGGACGACAGGAACTGGAACAGCTGTCTCTTCGCCCAACAGGCCGCCGCCCGGCTGAGGCATCATGGGAAAGAGAACTTTGAGGTGGTGATGTACCCCAGGGCGGGGCATTTTCTGGAAGTACCCTACATGCCCCACTGCCCGTCTGGCTTCCATCCCGCGGTTGGTCAAGTGGTGGTGTTTGGGGGAGAGGCTAAAGCCCACCATCAGGCTCAGCTGGACCTGTGGAGGAGGGTCCAGGATTTCTTCAGGAAACACCTGAAGGGGAACAACACTGGCGAAAAAGCTACGTTAAATACTAGAGGAGAACTGGTGACCATCACAACGGGGCGCTATGGATGTCACACCTCCTGCTGAAACTTCCTGCCAAAGAGTGTAGAAACCAAAGAATACACATACAGGTAGTATTCATTGAGTAGTACAGTGGTGTATTAGATGCTTTTAGAAGATGCACACAGGATTACTGAAGTGAGAGAACTATAAAAGTGAATAAAGACCTCCATTCCAGACACTTGACTCACTTGATGTGTTTGAAGTTGGATGAGGCTCCTGAACAGAGGGAACGTGCCATCTCCTGAGCCGACAATATGTTGCCTGTCTTCATCACAGATTGTGTTCACCCCATGTAGACAACAAGGGGAAATGCATGCTGAGTTCTGAGGTTTGTACTGCAGTCTAACTAAGCCAGATATTAAACTCCTCCAACTGTGTTCCTTTTTTGAAGCCACCTTGCTGAACTTCTGTTTCACTGGGCCACGGCCCATTAAGAAGCTTGGTCTTGAAACTGACTTTCAGGATATCTCCACTTGTGCCAC

Function

NR:

description
acyl-coenzyme A thioesterase 1-like isoform X2

GO:

id name namespace
GO:0006637 acyl-CoA metabolic process biological_process
GO:0016790 thiolester hydrolase activity molecular_function

KEGG:

id description
K01068 ACOT1_2_4; acyl-coenzyme A thioesterase 1/2/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558230.2 False 2935 mRNA 0.48 6 45300733 45333031
XM_021558231.2 True 2051 mRNA 0.50 5 45307070 45333032

Neighbor

gene id symbol gene type direction distance location
pik3r6b NA coding downstream 87078 45200981 ~ 45213655 (-)
LOC110485191 LOC106601377 coding downstream 104756 45194711 ~ 45195977 (-)
zgc:171844 LOC106607059 coding downstream 107418 45182660 ~ 45193315 (-)
tom1 LOC106607057 coding downstream 126711 45166694 ~ 45174022 (-)
gcat gcat coding downstream 135314 45159814 ~ 45165419 (-)
mchr1b LOC106601409 coding upstream 147968 45481000 ~ 45484678 (-)
trnas-aga-60 NA coding upstream 193557 45526589 ~ 45526670 (-)
LOC100135782 LOC106607000 coding upstream 318864 45651896 ~ 45654777 (-)
LOC110486550 LOC106601398 coding upstream 321866 45654898 ~ 45677812 (-)
LOC110486551 fbf1 coding upstream 347826 45680858 ~ 45692892 (-)
G1179121 NA non-coding downstream 30634 45269892 ~ 45270099 (-)
G1179119 NA non-coding downstream 31349 45269044 ~ 45269384 (-)
G1179106 NA non-coding downstream 32326 45267333 ~ 45268407 (-)
G1179056 NA non-coding downstream 118992 45181424 ~ 45181741 (-)
G1179208 NA non-coding upstream 12183 45345215 ~ 45345426 (-)
G1179209 NA non-coding upstream 19538 45352570 ~ 45352902 (-)
G1179344 NA non-coding upstream 110205 45443237 ~ 45443576 (-)
G1179346 NA non-coding upstream 111209 45444241 ~ 45445439 (-)
G1179318 NA non-coding upstream 120927 45453959 ~ 45455854 (-)
il-8 il-8 other downstream 213603 45085269 ~ 45087130 (-)
G1178996 NA other downstream 248709 45051576 ~ 45052024 (-)
G1178982 LOC106607046 other downstream 272120 45026515 ~ 45028613 (-)
G1178958 LOC106607010 other downstream 319533 44969210 ~ 44981200 (-)
G1179619 LOC106601391 other upstream 196404 45529436 ~ 45530114 (-)
G1179621 LOC106607015 other upstream 198826 45531858 ~ 45532662 (-)
LOC110486586 ubald2 other upstream 1180425 46510585 ~ 46535713 (-)
LOC110486590 LOC105022923 other upstream 1550396 46827752 ~ 46915018 (-)
LOC110486593 LOC106606954 other upstream 2099764 47432406 ~ 47433949 (-)

Expression


Co-expression Network