usp43b (LOC106601383)


Basic Information

Item Value
gene id usp43b
gene name LOC106601383
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45358739 ~ 45451742 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941255.1
CACGCCTCTTTCGAGGCGAAGTTAGAAGCGATGGGTAAGTGAGTGTGTACATGTCCGTAAAGGCTGCAAGTAGGAGGCAAGGAAAGGCGCGGTAATGTTGAACATCGATGGAGCTCGTGTAATTTGGTCAACAAGCATTAAGGGTTTCAGTAAGTGTTGAACTGTTTGACGTTTACCAGCTGCACGGGGTTGATATGTGTTGAAGTGCCATGGTTTCACCTCTGTGCGCTGGTGTTCTGTCCTCCTCACGGTATCCGGATGGGAAATCTCTGCAGAAAAGTGGCACACTGGCCTCGAAATTAATTCCAGAATTCTCCAACATCGGCAAAGTATTATAAAGATATGGATAAACACTGCAGAGTGAAGGATGAAGCCACATCAAAGGCAGCAACGCGCAAGGAAAACAAACAGAAACATGGACGGCTTTTTCGAAAGAAATCATTGAAGTCGGTGGGGAGTTTTGTAAATAAAATTATCAAAACTTTGGGCACTTTTACCCATTTTGGAGACGTTGCAGTTCAGGGCGCAGAGGATGACGATGGAGGGTTTCGTGACGGGACACCTTGCACACTCAGTGCCAACTCAGAAAATATCAAAGAGGATGTCCAGGTCGCCGGGGAGGATTCTGTTAAAAATAATTCGATAGCTTCTTCCCGTTGCTCGGTGAAAGAAAGGGTTTTATGGTGCTATGGTGGCAACATTCCAGGTGTTCTAGGCTTGAAAAATCACGGGAACACCTGTTTCATGAACGCCGTGGTCCAGTGCTTGAGCAACACTGACCTGCTCGCAGAGTATCTCGGGTTGGAATGGTACAAATTGGATTTGAGTCGAAGGAGAATTAATGGGATTGTTAAAAGTGAAGACACGCAGCATGCCAGAGGTGAAGTCACGGAGCAGTTGGCATCACTTGTTAGGGCACTCTGGACTCTGGAATACATCCCGCAACTGTCCGTGGAATTCAAGAGTATAGTATCCAAGTATGGATCCCAATTCCGAGGAAACTCCCAACATGACGCCCTGGAGTTCCTGCTTTGGCTTCTGGACCGAGTTCACGAGGATGTCAACTTGTCCTCCTGcagcaacaacaataacaagaCCAAAGCCCCAGGGAAGGGCCCTGGTATATCAGAGGAGGCGATGGTCACTGAGCCTCCCCACTCGCAGCAGCCCGGGGCACGCCACAGCTTTGTACAGGAACACTTCCAGGCACAATACAAGTCATCGCTGACCTGCCCTCATTGTCATAAACAGAGCAACACCTTTGACCCTTTCCTCTGCATTTCACTTCCCATCCCTCTGCGCCACACCAGGCCTCTGTGTGTAACTCTGGTCTTCAGTACAAAGGGCCAGAGATACCTGCGCATCGGGCTGGCTGTGCCTCTCTTTGGCTCGCTGGCCTTTCTGAGAAGGATGTTGGCGGATGAGGGGAAGATCTCCCCAGACCAGgtGATCCTGACAGAGATCTACACCACAGGCTTTCAGCGCTCCTTCTTTGATGAGGAGGATCTGACGTGCATAGCCGAGACTGACATCATCTATGCCTTCCAGGCCCCGCCTCTATACATCAGAGGAGGCTCTTCACAATTCTCAGGGTACCACCACAGCCTGCCGTCCTCACCGTACTCCTCCGGGCCCGAAGGTCAAAGGTTACCTCCATCCGGAACTTTGTCAACAGAGTTCCTGAACCATGGTGTGCCAGTGAAGATCCTGTTGCTGGTGTGCAACGCCGCCTGGAATGCCCAGCAGGCTGTCAGGTTTGGACCTCCGTTCCTGATGAGGGAGGACCGCTCCATCTCCTGGGACCAGCTGCAGCAGAGCATCCTCAGCAAGCTCTACTACCTGATGATCAACGGAGCTCAGGCCCAGAATGCCAGAGTGCTGTTTAAGATCCGTGTGGTGGCAGGATCAGCGTCCTACAGCTACCTCTCCCCCCAGGATGGACGGCCGCTCTACCACCCAGCAGTGAacagAGCTCTTAATCTCTGTGGCTCAGGAGGACCGCCCCATGTGAAGCTCATCATCGAGTGGGAACACAGAATCAAAGACTGCCTGTTTGGGAACATCCAGGAGGAGGTGGTGAAGGATGCTGAGAGTGTGAGAGGCCAGCATCAGCAGCACGTCCAGCAGCACAATTGTACCCTGGACGAGTGCTTTCAGCTCTACACTAAAGAGGAACAGcTGGCTCCAGACGATGCATGGAAATGTCCCCACTGTAAGCAGCTGCAACAGGGCATGGTGAAAATGAGCCTGTGGACGCTGCCTGACATCCTCATCCTCCACCTCAAGCGCTTCCGGCAGGTGGGCGAGCGCCGCAACAAGCTGGCCACGCTGGTGCGCTTCCCCCTAGACGGCCTAGACATGGCGCCCCATGTGGTGAAGAGGAGTCAGAGCACCCGGCTGCCCCCCCACGGTCCTCTGCTCCCCGGCCCCCTGCACCCGGCCTGGAAACAGCCCTGCCCACCCGACGTGGCCCCTCCAGACTTCCTATATGACCTCTATGCCGTATGTAACCACCACGGAGGCATGCACGGGGGACATTACACAGcgTTCTGCAGGAACTCATTGGACGCCCAGTGGTATGGGTATGATGACAGCAGTGCAGAGCCAGTCACAGAGGGGGAGGTGTGCACACGGGGAGCCTACATCCTCTTCTACCAGAGACGCAACACCATCCCTCCATGgtcagccagctcctctctcagaGGCTCCACCAGCTCCTCCACATCAGACCACTGGCTGATCCGTCTGACGCGGGACAGTAAGAGGGGCAGCCTGTTCTCTGGGGGGTCCACCTCTGGCCCTCCTGGCCCCACACCAACCCCCGAATCCCCAGAGCTCCCTGTGTTCGAGGACGAGCCTCTTAAAACAGAGACAGATGGGTTTGAGAATAATCTATTTGTCCGAGGCACTCAGGGCAGGAGCAAGAGCATGAGGTCACCCACTAAGGACACCCTGAGCAAAGTACTGCCCCTGCGCTGGTCCTTTGGTTCCAAGGACCGCCCCAAACCCTCCGCCCCCAGGCGAGGGGAGCTGGTGGAGTACCTGGAGTCAGGGCGCAGGCCGCGGTGCACCAAGGACCCCATCATCACCCTAGTGGCCACCCCACCCCAGGGCGGGCACAGGGACCTGGGCAGCTCCCCCAGTGGGAGCAGCCTGAGCTGCATGGACAGGTCCAACTCTGAGGCCTGCGACTCCCCAAGAGTACCCGAGGGCCAGAGCAGGCCTGCCGTAGAGAGGAGCTCCAGCCTGGGGCTCAGTATTATCACTAAAGTCAGGGATGACAGCTCACTTGGCCGGAGGTCCTCCAAGAGGTTCAGGCAGGACCAGGGCAGGACCCTGGACCCTCACCCCCATAGAGGCTCTACTGATGGGGTCCACATCAGCCACAGTGCCCCCCCAAGTAGGGACTCCACACTGAAGAGACCCAAGGCCCAAGCAGGGCTGACCTCCAGGGTAGGGGTGCTGCAGGCTGGTCTACAGcctgaggagaggaaggggatgagGGGTCAGGAGGTAAGGAGCCACGACAGCCTCTTGTCCTTTTTCAAATCAGGCTTCCTGAAGAAAGACACTCAGAGGACACCTAGCAAGGGAGAGGAAGTCCGGGCCAATGGCCATGGACGAACCAGCAAGGTGGCAAACGGTAGTTTGTCTAAACTCTCCCTCTCCAATGGGACCCTGAACGGTGTAGCGCTGGAGGAAAACAGGGCCAACGGCGCCCCTAGAAGTGACTGCCGTCACAGCAAAGGGCAGCTTGTCAACGGGAGGGCAGGAAGTCACAGCTCTGCTGCTGACATCAAGCGTGCCCACAGCTCCAGTAACATCCAGAGCAAACCGGACTTGACCCTGCGCAGGTGTGCCTCCCTGCAGAGGAACGGGCAGGTAGCTCCCCCGGCCCCCCGCAGCAGCCTGGCCACAGACAAGCCCAGCTATGCCACCCTGCAGCGGGCACGCTACAGCACCACCTCCCTTGGCAGGCAGCAGAGACCCGTCCCCGAGTCCTGCTTCTGACTCCCTCCGCACCGCTAGGCTAATTGGCTGCTGCCACAGCAGTAGAGTTACCTGGCCTGTGTGTCTCTTTATTTAGAGTTTCTGCCAATGCTACTGTCAGGGTTAGCATGTTAGTGTGAGCTGAGCAGTCTGGCCACCACTGCTAGAGCAGAGGAATAGTCACGGTGTTACTATAAGACAGGTTCTTAGGGGAGGCTTTGCCAACAGTAATGCAGTGCGTAACAGTTAACTGTCTGTCATAGTCTTCTGTTTAATGTAAGTGCCTCTGTGACAGTTCAGAATGATTGTTTGTTGAACACTGGAACCACGCTATTGATTGACACACATCACATCCAGACGGTCACCAGGTCTCTGTAGTATAGCCAGCAGAGCTGTTGTTTCTGAAGGGCATCATGTACCCTCTGTTAACACTGATGTTTATTGACATATTGTCTTTGTGTGTACATGAATCTATGCAGACTGTGTTACAATGGAGAGGTAACCCTGCTGCATTGTGATCATATTTATTCCACAAACATGTCAAGCATCTTTCTTGGTTGTATGCTGTCCTTGATTTTCTATTGATGTAGCCGTGGAGGAATATCCTGCACGAAAGGATTCAATTAAATgattgtctgtctgtgcttc

Function

NR:

description
ubiquitin carboxyl-terminal hydrolase 43-like

GO: NA

KEGG:

id description
K11856 USP43; ubiquitin carboxyl-terminal hydrolase 43

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941255.1 True 4638 mRNA 0.55 15 45358739 45451742

Neighbor

gene id symbol gene type direction distance location
LOC110486541 LOC106607062 coding upstream 90319 45223469 ~ 45268420 (+)
hmox1a LOC106607056 coding upstream 204007 45152082 ~ 45154732 (+)
LOC110486534 NA coding upstream 217799 45135680 ~ 45140940 (+)
zgc:162612 LOC106607050 coding upstream 243592 45111643 ~ 45115147 (+)
LOC110486529 LOC106607046 coding upstream 330119 45026189 ~ 45028620 (+)
LOC110486545 grb2 coding downstream 33056 45484798 ~ 45524322 (+)
trnas-aga-61 NA coding downstream 75063 45526805 ~ 45526886 (+)
LOC110485192 LOC106601391 coding downstream 77656 45529398 ~ 45554103 (+)
LOC110486547 LOC106607066 coding downstream 104076 45555818 ~ 45559601 (+)
LOC110486546 LOC106601396 coding downstream 108192 45559934 ~ 45614619 (+)
G1179178 NA non-coding upstream 5834 45352458 ~ 45352905 (+)
G1179151 NA non-coding upstream 15662 45300753 ~ 45343077 (+)
G1179130 NA non-coding upstream 83101 45275408 ~ 45275638 (+)
G1178658 NA non-coding upstream 157669 45200225 ~ 45201070 (+)
G1179214 NA non-coding downstream 2217 45453959 ~ 45455862 (+)
G1179350 NA non-coding downstream 4792 45456534 ~ 45456776 (+)
G1179352 NA non-coding downstream 5865 45457607 ~ 45457815 (+)
G1179359 NA non-coding downstream 9760 45461502 ~ 45461701 (+)
G1179360 NA non-coding downstream 10311 45462053 ~ 45462305 (+)
G1179156 NA other upstream 45706 45312330 ~ 45313033 (+)
LOC110486526 smarca4 other upstream 389020 44967368 ~ 44996127 (+)
LOC110485188 LOC106601310 other upstream 432422 44878675 ~ 44943951 (+)
G1178425 NA other upstream 494556 44859869 ~ 44864183 (+)
G1178363 NA other upstream 690280 44668068 ~ 44668459 (+)
G1179362 NA other downstream 10846 45462588 ~ 45462943 (+)
LOC118936304 LOC106601427 other downstream 722286 46173911 ~ 46176562 (+)
G1180047 NA other downstream 787402 46239144 ~ 46273601 (+)
LOC110485193 LOC106601421 other downstream 879976 46302751 ~ 46336386 (+)

Expression


Co-expression Network