Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110485192 |
| gene name | LOC106601391 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 45529398 ~ 45554103 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| nucleosome-remodeling factor subunit BPTF-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005035567.1 | False | 9816 | mRNA | 0.56 | 32 | 45529398 | 45553552 |
| XM_036941256.1 | False | 10260 | mRNA | 0.55 | 31 | 45529398 | 45554103 |
| XM_036941257.1 | False | 10257 | mRNA | 0.55 | 31 | 45529398 | 45554103 |
| XM_036941258.1 | False | 10245 | mRNA | 0.55 | 31 | 45529398 | 45554103 |
| XM_036941259.1 | False | 11299 | mRNA | 0.53 | 31 | 45529398 | 45554103 |
| XM_036941260.1 | False | 10221 | mRNA | 0.55 | 32 | 45529398 | 45554103 |
| XM_036941261.1 | False | 10176 | mRNA | 0.55 | 31 | 45529398 | 45554103 |
| XM_036941262.1 | False | 10089 | mRNA | 0.55 | 30 | 45529398 | 45554103 |
| XM_036941263.1 | False | 10083 | mRNA | 0.55 | 30 | 45529398 | 45554103 |
| XM_036941264.1 | False | 10074 | mRNA | 0.55 | 30 | 45529398 | 45554103 |
| XM_036941265.1 | False | 10005 | mRNA | 0.55 | 30 | 45529398 | 45554103 |
| TU1345036 | True | 693 | TUCP | 0.51 | 1 | 45529436 | 45530128 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| trnas-aga-61 | NA | coding | upstream | 2512 | 45526805 ~ 45526886 (+) |
| LOC110486545 | grb2 | coding | upstream | 5076 | 45484798 ~ 45524322 (+) |
| usp43b | LOC106601383 | coding | upstream | 77656 | 45358739 ~ 45451742 (+) |
| LOC110486541 | LOC106607062 | coding | upstream | 260978 | 45223469 ~ 45268420 (+) |
| hmox1a | LOC106607056 | coding | upstream | 374666 | 45152082 ~ 45154732 (+) |
| LOC110486547 | LOC106607066 | coding | downstream | 1715 | 45555818 ~ 45559601 (+) |
| LOC110486546 | LOC106601396 | coding | downstream | 5831 | 45559934 ~ 45614619 (+) |
| LOC110486548 | LOC106607064 | coding | downstream | 67430 | 45621533 ~ 45627020 (+) |
| LOC110486549 | LOC106607014 | coding | downstream | 78553 | 45632656 ~ 45646849 (+) |
| LOC110486552 | NA | coding | downstream | 124735 | 45678838 ~ 45681070 (+) |
| G1179369 | NA | non-coding | upstream | 57983 | 45471185 ~ 45471415 (+) |
| G1179360 | NA | non-coding | upstream | 67093 | 45462053 ~ 45462305 (+) |
| G1179359 | NA | non-coding | upstream | 67697 | 45461502 ~ 45461701 (+) |
| G1179352 | NA | non-coding | upstream | 71583 | 45457607 ~ 45457815 (+) |
| G1179350 | NA | non-coding | upstream | 72622 | 45456534 ~ 45456776 (+) |
| G1179446 | NA | non-coding | downstream | 99664 | 45653767 ~ 45654496 (+) |
| G1179445 | NA | non-coding | downstream | 100924 | 45655027 ~ 45656039 (+) |
| G1179448 | NA | non-coding | downstream | 108759 | 45662862 ~ 45663122 (+) |
| G1179452 | NA | non-coding | downstream | 115457 | 45669560 ~ 45669987 (+) |
| G1179453 | NA | non-coding | downstream | 116560 | 45670663 ~ 45670951 (+) |
| G1179362 | NA | other | upstream | 66455 | 45462588 ~ 45462943 (+) |
| G1179156 | NA | other | upstream | 216365 | 45312330 ~ 45313033 (+) |
| LOC110486526 | smarca4 | other | upstream | 559679 | 44967368 ~ 44996127 (+) |
| LOC110485188 | LOC106601310 | other | upstream | 603081 | 44878675 ~ 44943951 (+) |
| G1178425 | NA | other | upstream | 665215 | 44859869 ~ 44864183 (+) |
| LOC118936304 | LOC106601427 | other | downstream | 619925 | 46173911 ~ 46176562 (+) |
| G1180047 | NA | other | downstream | 685041 | 46239144 ~ 46273601 (+) |
| LOC110485193 | LOC106601421 | other | downstream | 777615 | 46302751 ~ 46336386 (+) |
| G1181472 | NA | other | downstream | 1820060 | 47374163 ~ 47374477 (+) |
| tmem100a | LOC106606948 | other | downstream | 1914013 | 47468012 ~ 47471205 (+) |
| G1179402 | NA | non-coding | downstream | 2590 | 45532718 ~ 45532950 (+) |
