LOC110486548 (LOC106607064)


Basic Information

Item Value
gene id LOC110486548
gene name LOC106607064
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45621533 ~ 45627020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558239.2
AAAGCCGAATCTCCTTTTAGTTCGCCGGCATTTCAGCATCATCACGGCAGTTCGGGTTTGATATCGGATTTTCAGGCGTAGTTTATTTATCGTTTTTATTTATACACTTTGTTTACAAGATGCCTGGATTTTCCGACAGAGATCGTGGTAGAGATAGAGGTTATGGCAGTGGACCACCTCGTTTTGGAGGCGGcggaagaggaggtggtggtggtggggggaagTTCGGTAATCCCGGTGATAGACTGCGCAAGAAGCATTGGAACCTTGACGAACTCTCTAAATTTGAAAAGAACTTCTACCAAGAACACCCGGATGTTAATCGGAGATCTCCGCAAGAGGTTGCACAGTACAGAAGTACTAAAGCTGTTACTGTGAAGGGGAGGGACTGCCCTAATCCAATTATGAAGTTCCATGAAGCCAGTTTTCCAACATACGTGATGGATGTCATTAACAAAGCAGGCTGGTCAGAACCAACACCGATCCAAGCACAGGGTTGGCCACTGGCATTGAGTGGCAAGGACATGGTTGGCATTGCACAGACAGGCTCTGGGAAAACTCTCTCTTACTTGTTGCCTGCAATCGTGCACATTAACCACCAGCCTTTCCTGGAACGTGGAGATGGCCCTATTTGCTTAGTGCTTGCCCCTACCCGTGAGCTGGCTCAGCAGGTCCAGCAGGTGGCGGCAGAGTATGGCAGAGCTTCTCGCCTGAAGTCTGTCTGCGTTTATGGTGGTGCGCCCAAAGGGCCACAGCTCCGTGACCTGGATAGAGGTGTGGAGATTTGCATTGCCACACCTGGCAGGCTTATTGACTTCCTGGAGGCGGGAAAGACGAACATGCGCAGATGCACTTACCTGGTCCTGGATGAGGCTGACCGAATGCTCGACATGGGTTTCGAACCACAAATCCGAAAGATTGTGGACCAAATCAGACCTGACCGACAGACGCTGATGTGGAGTGCTACCTGGCCCAAAGAGGTGCGCCAGCTGGCAGAGGACTTCCTGAAGGACTACGTCCAGATCAATGTGGGAGCTCTGCAGCTGAGTGCCAACCACAACATCTTACAGATCGTGGATGTTTGCAATGATGGCGAGAAGGAAGACAAGCTCCTCCGCCTACTTGAGGAGATAATGAGTGAGAAGGAGAACAAGACCATCATCTTTACAGAGACCAAGAGGCGATGTGATGAGATCactaggaggatgaggagggatggTTGGCCAGCAATGGGCATCCATGGAGACAAGAGCCAGCAGGAGAGGGACTGGGTGCTCAATGAGTTCAAGTTTGGAAAGGCGCCAATTCTCATTGCCACAGACGTCGCCTCCAGGGGTCTAGATGTTGAAGATGTGAAATTTGTCATCAACTTTGACTACCCCAACAACTCTGAGGACTATATTCACCGCATCGGCAGAACTGCCCGGAGCCAAAAGACTGGCACAGCCTACACCTTCTTCACCCCCAACAACATGAGGCAGGCCAGCGACCTTGTTGCTGTGCTCCGTGAGGCCAACCAGGCCATCAACCCTAAACTCCTCCAGATGGCGGACAGAGGAGGTCATTCAAGGGGAGGCAGAGGTGGTAGTGGATTTAGGGATGACCGCCGGGACAGGTACTCCTCCGGGGGCAGGCGTGACTTCAGTAGCTTTAGGGACAGGGAAAACGATAGAGGTTTTGACAGTGGACCAAAGAAGGTCTTTGGCACAAATTCACAGAGTGGAGGCTATGGGGCAAGTGGCTTTGACAAAAGCGGCAATGGTTTTAGCGGCTACGGCAGCAACGGCCAGTCAAACTATGGTACCAGCCAGGCCGGGGCGTTCCCAACGCAGAACTTCCAGGCCCCACAGTTTAGTGCCAACCAAGGAGGTGCACAGAATGGCATGAGCCATCAACAGTTCCCCTTCACGCAGCAACAAGCACCACAGCCCATGGTGCCTTACCCAATGCCCCCTCAATTCCCACAGTAAACATGCACATGAAAGTAAAGATGGTAACTTATTGCTTTTTTGTCTTGTTTAGTCCTATACTCTATCCCAAATTGTACTGTTTAATTTTTTACGCAGGGTtcaatggatttttttttaacctctatcaagtccggggggggggggggtcctgcagcGCAGCAATAGTGATGCCGCACAGTTTTGCTTTCTTTCACTTATTTAATTTGTTACATTCCTCAGTGATGTTTAGTCTTTTGTACTAGTTATTGCAGATGTATTGTTTTGTCCCACCTGTACCATTTAAAGTGATATGTTAAGATCTTAACTGGGAGGCACTGCATTGCCTTTCGATTAAAAACCAAAAATACTTCA
>XM_021558240.2
AAAGCCGAATCTCCTTTTAGTTCGCCGGCATTTCAGCATCATCACGGCAGTTCGGGTTTGATATCGGATTTTCAGGCGTAGTTTATTTATCGTTTTTATTTATACACTTTGTTTACAAGATGCCTGGATTTTCCGACAGAGATCGTGGTAGAGATAGAGGTTATGGCAGTGGACCACCTCGTTTTGGAGGCGGcggaagaggaggtggtggtggtggggggaagTTCGGTAATCCCGGTGATAGACTGCGCAAGAAGCATTGGAACCTTGACGAACTCTCTAAATTTGAAAAGAACTTCTACCAAGAACACCCGGATGTTAATCGGAGATCTCCGCAAGAGGTTGCACAGTACAGAAGTACTAAAGCTGTTACTGTGAAGGGGAGGGACTGCCCTAATCCAATTATGAAGTTCCATGAAGCCAGTTTTCCAACATACGTGATGGATGTCATTAACAAAGCAGGCTGGTCAGAACCAACACCGATCCAAGCACAGGGTTGGCCACTGGCATTGAGTGGCAAGGACATGGTTGGCATTGCACAGACAGGCTCTGGGAAAACTCTCTCTTACTTGTTGCCTGCAATCGTGCACATTAACCACCAGCCTTTCCTGGAACGTGGAGATGGCCCTATTTGCTTAGTGCTTGCCCCTACCCGTGAGCTGGCTCAGCAGGTCCAGCAGGTGGCGGCAGAGTATGGCAGAGCTTCTCGCCTGAAGTCTGTCTGCGTTTATGGTGGTGCGCCCAAAGGGCCACAGCTCCGTGACCTGGATAGAGGTGTGGAGATTTGCATTGCCACACCTGGCAGGCTTATTGACTTCCTGGAGGCGGGAAAGACGAACATGCGCAGATGCACTTACCTGGTCCTGGATGAGGCTGACCGAATGCTCGACATGGGTTTCGAACCACAAATCCGAAAGATTGTGGACCAAATCAGACCTGACCGACAGACGCTGATGTGGAGTGCTACCTGGCCCAAAGAGGTGCGCCAGCTGGCAGAGGACTTCCTGAAGGACTACGTCCAGATCAATGTGGGAGCTCTGCAGCTGAGTGCCAACCACAACATCTTACAGATCGTGGATGTTTGCAATGATGGCGAGAAGGAAGACAAGCTCCTCCGCCTACTTGAGGAGATAATGAGTGAGAAGGAGAACAAGACCATCATCTTTACAGAGACCAAGAGGCGATGTGATGAGATCactaggaggatgaggagggatggTTGGCCAGCAATGGGCATCCATGGAGACAAGAGCCAGCAGGAGAGGGACTGGGTGCTCAATGAGTTCAAGTTTGGAAAGGCGCCAATTCTCATTGCCACAGACGTCGCCTCCAGGGGTCTAGATGTTGAAGATGTGAAATTTGTCATCAACTTTGACTACCCCAACAACTCTGAGGACTATATTCACCGCATCGGCAGAACTGCCCGGAGCCAAAAGACTGGCACAGCCTACACCTTCTTCACCCCCAACAACATGAGGCAGGCCAGCGACCTTGTTGCTGTGCTCCGTGAGGCCAACCAGGCCATCAACCCTAAACTCCTCCAGATGGCGGACAGAGGAGGTAAATCTAATTGGTCATTCAAGGGGAGGCAGAGGTGGTAGTGGATTTAGGGATGACCGCCGGGACAGGTACTCCTCCGGGGGCAGGCGTGACTTCAGTAGCTTTAGGGACAGGGAAAACGATAGAGGTTTTGACAGTGGACCAAAGAAGGTCTTTGGCACAAATTCACAGAGTGGAGGCTATGGGGCAAGTGGCTTTGACAAAAGCGGCAATGGTTTTAGCGGCTACGGCAGCAACGGCCAGTCAAACTATGGTACCAGCCAGGCCGGGGCGTTCCCAACGCAGAACTTCCAGGCCCCACAGTTTAGTGCCAACCAAGGAGGTGCACAGAATGGCATGAGCCATCAACAGTTCCCCTTCACGCAGCAACAAGCACCACAGCCCATGGTGCCTTACCCAATGCCCCCTCAATTCCCACAGTAAACATGCACATGAAAGTAAAGATGGTAACTTATTGCTTTTTTGTCTTGTTTAGTCCTATACTCTATCCCAAATTGTACTGTTTAATTTTTTACGCAGGGTtcaatggatttttttttaacctctatcaagtccggggggggggggggtcctgcagcGCAGCAATAGTGATGCCGCACAGTTTTGCTTTCTTTCACTTATTTAATTTGTTACATTCCTCAGTGATGTTTAGTCTTTTGTACTAGTTATTGCAGATGTATTGTTTTGTCCCACCTGTACCATTTAAAGTGATATGTTAAGATCTTAACTGGGAGGCACTGCATTGCCTTTCGATTAAAAACCAAAAATACTTCA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12823 DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558239.2 False 2321 mRNA 0.50 13 45621533 45627020
XM_021558240.2 True 2334 mRNA 0.50 13 45621533 45627020

Neighbor

gene id symbol gene type direction distance location
LOC110486546 LOC106601396 coding upstream 6914 45559934 ~ 45614619 (+)
LOC110486547 LOC106607066 coding upstream 61932 45555818 ~ 45559601 (+)
LOC110485192 LOC106601391 coding upstream 67430 45529398 ~ 45554103 (+)
trnas-aga-61 NA coding upstream 94647 45526805 ~ 45526886 (+)
LOC110486545 grb2 coding upstream 97211 45484798 ~ 45524322 (+)
LOC110486549 LOC106607014 coding downstream 5636 45632656 ~ 45646849 (+)
LOC110486552 NA coding downstream 51818 45678838 ~ 45681070 (+)
LOC118938602 NA coding downstream 52510 45679530 ~ 45679601 (+)
LOC118938601 NA coding downstream 53072 45680092 ~ 45680163 (+)
LOC118938603 NA coding downstream 53304 45680324 ~ 45680396 (+)
G1179402 NA non-coding upstream 88583 45532718 ~ 45532950 (+)
G1179369 NA non-coding upstream 150118 45471185 ~ 45471415 (+)
G1179360 NA non-coding upstream 159228 45462053 ~ 45462305 (+)
G1179359 NA non-coding upstream 159832 45461502 ~ 45461701 (+)
G1179352 NA non-coding upstream 163718 45457607 ~ 45457815 (+)
G1179446 NA non-coding downstream 26747 45653767 ~ 45654496 (+)
G1179445 NA non-coding downstream 28007 45655027 ~ 45656039 (+)
G1179448 NA non-coding downstream 35842 45662862 ~ 45663122 (+)
G1179452 NA non-coding downstream 42540 45669560 ~ 45669987 (+)
G1179453 NA non-coding downstream 43643 45670663 ~ 45670951 (+)
G1179362 NA other upstream 158590 45462588 ~ 45462943 (+)
G1179156 NA other upstream 308500 45312330 ~ 45313033 (+)
LOC110486526 smarca4 other upstream 651814 44967368 ~ 44996127 (+)
LOC110485188 LOC106601310 other upstream 695216 44878675 ~ 44943951 (+)
LOC118936304 LOC106601427 other downstream 547008 46173911 ~ 46176562 (+)
G1180047 NA other downstream 612124 46239144 ~ 46273601 (+)
LOC110485193 LOC106601421 other downstream 704698 46302751 ~ 46336386 (+)
G1181472 NA other downstream 1747143 47374163 ~ 47374477 (+)
tmem100a LOC106606948 other downstream 1841096 47468012 ~ 47471205 (+)

Expression


Co-expression Network