LOC110486549 (LOC106607014)


Basic Information

Item Value
gene id LOC110486549
gene name LOC106607014
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45632656 ~ 45646849 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558241.2
CATGATGACACACCTGTTCTTTGGGGTGGAGCTGAGACAGGTGGCTGCTCTTTaactagagagaggagacacggctagagagagaggtacagcgAGGAGAGGGAAGTAAGGAGTAAGGTCATTTCACTGGGACTGACAGAACACACAGCCTCCCAGGATGTTCAGCAAGAAGAAGGAGTACGACCTGGTGAAAGTGGCACAGAGCCAAGGTAATGATGTGGCCGTGCTGGTGGCGCGCATGCAGAGCAATGCAGACCGGGTAGAGAAGAATGTGCTGCGCTCTGAGGAGCTGATGGCTGTGGACACAGTGAATGACAAGAAGGACAGGCCCTTACTGCACCAGAAGGAGAATACAGAGATCCTAGCTGAGGCTGAGGGGCTGCTGAAGGATCTGTTCCTGGATGTGGACCGGGCCAAGAAGCTTTCACACCCACAGGCTGGAGAGATAGAGATTGATGTGAGAAACCTCCATGACCGCTGGTCTAAGGACTGTACCATGTACCGGGACCTGTATGAGGCAGTGCAGGAGGTGGAGCTCACTCCCAGGATTGACTGGTCTCAGGTGCTGGAGGAGAAACAGAAGCAGATAAGTGCAGAGAGGTACGGGCCCAACCTGTCTGATGTGGAGAAGCAGATTGCCTCTCATAACATCCTGCACCAGGAGATCGAGGCCTACGGCTCCCAAATGAACCGCAGCAGCACTGGCTCTCCGGCAAAGTTGTCTACCTTTCAGAGACAGTACACAGATCTCTTGGAGGCCTCCCTGTGGAGACACAGGTACCTGGCCTCTCTGTATGACTACATGCAGGGCTGCAGTAAGGAGCTAGTCTACCTGAGCGAGTACCAGGAGAGGATCCTCAGGAAGGACTGGAGCGACCACATGCTGGACCCCCCAGGGGTGCGCATGGAGTACGAGAAGTTCAAAAACAACACTCTGCTAACACATGAGAGCGAGACCAAACAGCTACAGATGGATGGGGATCGTCTCGTTGAAATGAAGCACCCTGCCAGCTCTACAATACGGGCACACAGCGACGCATTGCAGAACGAGTGGCAGAGCTTCCTAAACCTGTGTATCTGCCAGGAGGTACACCTTGACAACATAGACAACTACAGGAAGTACCAGCTGGATGTAGAGACCTTGTCTGAGTCCATGAAGAGACTCAACTCTAATCTGGACCCCAAATCACTGAACAACAAGAAGAACCCAGAGATCCTGCTACAGCTTGAGggtgatgagagagcgatagagaggaaCGAACAGCGCCTCGTAGCCCTGAGGGAGTTCAGCAGCACCATTGCCCCTCTGAAGCTGCGGCGCATCCGCCCCACCAAACCCACCCCTGTGTTGTCCCTGTGTGAATGGACCAATGGAGAGGACTCAGTGTCTCAAGCAGAGAAGCTCATGCTAAAGTCCAACTTAGACGATGAGAACTGGGAGGTCCAGACCAGCACTGGGAAGACCAAAACCCTGCCTGGAGCCTGCTTCCTGGTCCCACCGCCAGACACTGAGGCCCTTGAGAAAGTGGAAAGtCTGTACAGAGAGCTTTCTAACCTGAAGAGAAAGAGAACTACTCTGATGGCCTCCCTGAGGAGCCCCGGTGTGGAGGTGGTGCGCTCAGtgagagcagCCCCTGTGGCTAATGCCCCAGTGGACCCAAAGACCACGGTGCTGGCCAGCCAGCTGGACAAGATCAGCAAGAACCTGGACCACAGTGAGAAGGACATCCTGAGCCGGCTGAGGGCCCCTCTGGATCGCAGTGACCCCACACATGACCTGGCCAACAGGCTGAAGGAGCATGAGAGGGCCACCCTGACTGTTAGGAACCTGGAGGCAGAGAAGGCAGCGGTCCAGAGAGATATGGATCCCATCCTAGCCCAGAAGCCCCTTGGGCCCACCACCTCCGCCCTGTCCCTCAAACTGAGTGGTCTTAACAACAAGTTTGACGACACCAACGTCCTCTGTGACCTGTACAACAAAAAAGCCACAGCTTCCATGTTCTTGGAGAAGCAGATAAATATGGTGGACAACTCAGTCTCTGGCTTTGAGGAGCAGCTGGCTGAAGATGCTGCCCTCCCTGATGTTCCCAACGTCCTCCAGACACGGATCACGAAGCTTCAGAACATGCGCAAGGATGTAGCGTTAAAGCAGGACGAGATGCTGAAGCTGAGCAGGGACTTGGAGTCCACAGAGCAGCTGAGCAGCTCCCTGCAGAAGGGCTTCCATGAGTACTGCCCAGACATCCGCCGCCAGCAGACAGAGGTCAAACACCTGAAGAACCGCTATGCCAACGTCAACAGTCAGCTACAGGAGAGAACGGTTCTGCTGCAAGAGGCAACCAACAAGAATCAAGGCTTCCAGAGCTCTGTCCAATCATTGAACTTATTTTTGACCAACCTGCCTAATAATACGATCAATCCAAGTGATGGACTTTCTCAAATTAACTTCAAGCAGAACTCTCAGAAGAGAGTGGTGGAGGACATAAAAAGGAAATCAGATGATGTGGGCCTAGCAGTGAAACAGTCCCGTGACTTGCAGAATGTCCTCAATGAGTATGAGGCCAAATCTGATAAGTACCGTGGTACACTGAAAGATGTGGATGATGAAGATGCCAAAAGACGTCACACATCCGCCATGGCTGACGCTGTGCTTAAAAAGGAAAGAGCTCTACTGAACCTCTACTCAGAGGTGTCTGCAGAGAATGATCAGCTTCTCAACAAGATGGGATTGGCTAAGAACATAATTGCCCAAAATGAAGAGAAGGTGAGCCAGGTGGTGGTGAAACAGGAGCGGCAGCTGCAGAGCCAGCAGAAAGACCTGGAGGAAACAGACGTTCTAAAGAGAGAGCTGGCGGATGAGACCACCAGGCGCTCCCATGCTGAGAATGAACTAGCAACATACAGAAAGAGGTTTATTTCACTGAAAAGCCGTAGAGGTGTGGAACGAATGGAGGAGAGGGAAGTTGTGCAGTACTACCGTGACCCCAAACTAGAGGGTGACCTGGTGTCCCTGAAGAGTCGAATCCAAGATGAGACTATAAAACACTCTGGCAcccagacagagataaaggttGTCAATGAGAATATCATCCGCCGGGAGACTGAGCTGACAAATGTCAAACCTAGGCTGTTGACCAAGATGTTAACTGAGTTTGAGAGGGACCCCCAGCTTGACAAGGAGGCCACCAAGCTGAGAGAGGAGATGCGCAAGCTCGAGCAGGAGGTCcaggtgagagatacagagacggTCCACATGAAGACTGAGATCACAGTTCTGGCACAGAAGAGACCGACTATCAAAGAGAGAGTAGTGAAAAAGGAGGTGGTGAGACTGGAGAAGGACCCGGAGATGCTGAAAGCAGTTCTGACCTTTCAGACCGAAATCTCAGAGGAGGGGTTAAGATCCAAGGCCCTCAATGATGACATATTCCGCACTAGGAGCCAAATAAACACACTTGAGAGGATCATTCCCACAATCCAGCCTAAGATTGTTACCAAGGTGCTGAAGAGGGTGGAACAGGACCCAAAACTCATTGACGAGGTTAAGACTATTCACAACAGCCTGGAAGAGGAGAACAAGATAAACAGTGATTTGATGAAGGAACTCACCAGCCTCCAGATCCGCTACAGTGAAGTGGAGAAGGTACGGCCCAAGCTTGAGGTCAAGGAGATCATCAATGAGATCTACAGGGTGGACCCTGAGACAGAGGTGGAGCTGGTGAGGCTAAGGAAAGAGATGCATGACTCTAATCGAAACCGCACTGATCTGGAGAAAGAAATAGACTCAGTTATGGTGGATCTTAAAACTCTGCGTTCCCAGAAACCCAAGTCAGAGTACAAGGAAGTGACCCAGGAAGTGATTAAAGAGGAGAAGAGCCCAGAGGTCATCAGGGAAATTAAGAGGTTGAACGACCAGGTTTCACTTCTGCGGGTTTCATATGACAGCACCCTGAATCTGCTGAGCCGCCTGCGCAAAGAGAGGGATGAATGGAAGGTTGAAAAGTCTAAGTTAGAGACAAAGCTTGTAAACAAAGAGGTGGTCAAATATGAAAATGACCCCCTACTGGAGAAGGAGGCTGACCGTCTGAGGAGAGATGTGAGGGAGGAAATCCAGCAACGACGCAACATGGAGGAAACTGTCTTTGACCTGCAGAACAAGTACATCATGGTGGAAAGGCAGAAACCAGAGGAGAAGATTGTGATGCAGGAAGTGGTGCGTCTTGAGAAGGATCCAAAACAACTCCTGGAGTATGAAAAGCTGAACAAGAACTTGGATGAAGAGGTTAAATCCCGTAGAAAACTGGAATTGGAAGTTCGACAGTTGAGAGCCCTggttgaggagaaagagagaaacttgGCACTGATGGACGACCGGCAAAAAAAGATTCAAGTAGAAACAGAGCTTAGACAGATCAAATCTCGCATCCTTGAGCTTGAAAATAGCCCTCAACCCATTGCGGAGAAGATCATTATTGAGGAAGTCCTCAAAGTGGAGAGAGACCCCAAGCTTGAGAAACTAACCAGTGGCTTACGCACAGACATGGATATGGAGGAAACCAACAtcagtcagttggaaagggacaTCCGAAACCTGAAGATCAAGTTGGACATCCTGCGCAAGGAAAAGTCAATTGAAAAGACTGTATATAAAGAGGTGATTCGGGTGGAGAAGGACCAGAATGTGGAGGCTGAGAGGGACCATCTCAGAGATCTAGTGTTGCAGGAAAGAAGTTCCAGACGGGATCAAGAAGATGAAATCCAGAGACTTAATACCAAAGTGACCCGGCTCCAGACCACAAAGTCAAGCACCTCTCACGAAGAAACAAGCATCACCCTCAATAGAGATTCCCtgatgagagagaaggaaaatcTCCTCCAAACACTGAGGACTTTGGAGTCTGAGAAACATGATTTAAGCATATCGTTCCAGCTGCAATCCAAGCTGATGAGTGAGAGAAACCAGATAAACAGGCAAAGGGGCTTCAAGATGGATTCTGAGGTACAACGTCTAGAAAAGGACATCCTGGATGAAAAAGACCGGATACACCAAAAGGAGACCTACATTATGGAGCTGCAGAACAATCTTAAGAAAGAGGACCACTCTGAGACACACACCAGAGAGACCAACCTCTCCACTAGAATCAGCATCCTTGACCCCGAGACTGGCAAAGACATGTCACCATATGATGCCTACTTAGAGGGCCTGATTGACCGCAACAAGTACATCCAGCTTCAGGAGCTAGAATGTGACTGGGAGGAGATCACCTCAATGGGTCCAGATGGGGAGACCTCGATTCTGCAGGATCGCAAGAGTGGAAAGCAGTTCTCTGTCAAGAATGCTCTAAAGGATGGCCGCTTGACCCAGTCCGATCTGCACCGCTACAAGGAGGGTAAAATGCCTATCTCAGAATTTGCTCTCCTGGTCGCTGGGGAATCCAGACCAAAGCCTTACATTGGTCCAATCGCAACACCAAGGACACCGACAAAGACCACTGCGGCATCTTCTTTGAGCACAATGCCATCATCACTAAGGTCTTCCTACTCAAGTCTCACAAACAATAGATACGGCAGCAGTAGCAACCTGAATATTTCTAGCGGTGATGAGCTCTTCCCAATCTCTGGGGTGCTGGACTCCACCACCAACAGCCGTATGTCTGTACGTAGTGCCCTGACTCGAAACCTTATTGACCCAACCACAGCCCAGAAGCTCCTGGAGGCACAGGCAGCCACGGGTGGCATCGTCGACCTCAACAGAAAGGACAAGTTCTCTGTTCACAAAGCAGTTGAGCTGGGTCTCATTGACAAAAGTCACATGCATCTGCTACTGAATGCTCAGAAGGCCTTCACTGGAGTGGAGGATCCTGTGACCAAGGAGCGTCTCGCAGTAGGGCAAGCGGCTGAGAAAGGCTGGATACCTCAGGATAGTGCCATGAGGTACATGGAAGCACAGTACCTGACTGGGGGGCTGGTGAACCCCCATAAAGCTGGTCGCATCAGTGTCCAAGATGCTCTTAACACCAAGATAATTGACAGCACAGTAGCCAAGAACCTCCAAGACAAGTCTGCCCACACCAAAGAGTTGATTGACCCCATCACGAAAGAGAAGATCTCGTACAAGGAGGCAATGGATCGCTGCAAAAAAGATGTCACTACAGGGCTCTTGCTGCTCCCTGCAGCCTCCAGCGGTGACTCCAAAGATGCACCATCATACTCCAACTATCGAATCCCTGGCTCCTACAGCCAAGTCTAGACATGTGGCTGACACACATGCCAGATCTAGAGAGATGCTACAGCTCCAGGTGCTAAATAGAAATTCAcatcacaacaacacaaacacatgttCTTTTGATGTTTTTATGGTAAAGGTAGACCATTTTTATAGTTCTGATTGTTGAAGTCAGAAAATGTCTAGGTTGAACTGTATACATTTGCCTGTTCTTTATTGATGCTATGATTCTCAAGAGTTGCTGTACACATCATTTAAATTAATGTTTGGTGAAGAGCTTTCTTTGATTTGTTTTTCAGTATTGTGAGAGCCATCTTCCAATAAACTTTCAAATAAGCACTCATTACATTTTTCAAAACAAAC

Function

NR:

description
envoplakin-like

GO: NA

KEGG:

id description
K10383 EVPL; envoplakin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558241.2 True 6589 mRNA 0.50 21 45632656 45646849

Neighbor

gene id symbol gene type direction distance location
LOC110486548 LOC106607064 coding upstream 5636 45621533 ~ 45627020 (+)
LOC110486546 LOC106601396 coding upstream 18037 45559934 ~ 45614619 (+)
LOC110486547 LOC106607066 coding upstream 73055 45555818 ~ 45559601 (+)
LOC110485192 LOC106601391 coding upstream 78553 45529398 ~ 45554103 (+)
trnas-aga-61 NA coding upstream 105770 45526805 ~ 45526886 (+)
LOC110486552 NA coding downstream 31989 45678838 ~ 45681070 (+)
LOC118938602 NA coding downstream 32681 45679530 ~ 45679601 (+)
LOC118938601 NA coding downstream 33243 45680092 ~ 45680163 (+)
LOC118938603 NA coding downstream 33475 45680324 ~ 45680396 (+)
LOC110486555 LOC106606986 coding downstream 83618 45730467 ~ 45742507 (+)
G1179402 NA non-coding upstream 99706 45532718 ~ 45532950 (+)
G1179369 NA non-coding upstream 161241 45471185 ~ 45471415 (+)
G1179360 NA non-coding upstream 170351 45462053 ~ 45462305 (+)
G1179359 NA non-coding upstream 170955 45461502 ~ 45461701 (+)
G1179352 NA non-coding upstream 174841 45457607 ~ 45457815 (+)
G1179446 NA non-coding downstream 6918 45653767 ~ 45654496 (+)
G1179445 NA non-coding downstream 8178 45655027 ~ 45656039 (+)
G1179448 NA non-coding downstream 16013 45662862 ~ 45663122 (+)
G1179452 NA non-coding downstream 22711 45669560 ~ 45669987 (+)
G1179453 NA non-coding downstream 23814 45670663 ~ 45670951 (+)
G1179362 NA other upstream 169713 45462588 ~ 45462943 (+)
G1179156 NA other upstream 319623 45312330 ~ 45313033 (+)
LOC110486526 smarca4 other upstream 662937 44967368 ~ 44996127 (+)
LOC110485188 LOC106601310 other upstream 706339 44878675 ~ 44943951 (+)
LOC118936304 LOC106601427 other downstream 527179 46173911 ~ 46176562 (+)
G1180047 NA other downstream 592295 46239144 ~ 46273601 (+)
LOC110485193 LOC106601421 other downstream 684869 46302751 ~ 46336386 (+)
G1181472 NA other downstream 1727314 47374163 ~ 47374477 (+)
tmem100a LOC106606948 other downstream 1821267 47468012 ~ 47471205 (+)

Expression


Co-expression Network