LOC100135782 (LOC106607000)


Basic Information

Item Value
gene id LOC100135782
gene name LOC106607000
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45651896 ~ 45654777 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124180.1
TGTAACAGCCAAGAGAGAAGACTTGTGCAAACAAACAACAATAGAAGCAACAGAAGAATATCGAAGTAATCCAACTGGAGTTATAAAAGTTGTAAAATGTCTCTAGTGGGCGCCCTGCCTTTCCTGAAACCGCGCCTATCCCCTTCTGTTTCTCCTGGGCGCCAAAGAAGACACACACTGCCAGCAAGCGAGTTCCGGCCGCTCAACACTCAAGATGCTATCAGCGTGTTCGAAATCGAGAAAGAGGCCTTTATCTCTGTGTCAGGAGACTGCCCGCTCCACCTTGATGAGGTGCGTCATTTCCTCATGCTGTGTCCAGAGCTGTCCATGGGCTGGTTTGAGGAGGGGAGACTAGTAGCCTTCATCATTGGGTCCCAATGGGACCAGGACAGACTCACCCTAGACGCCCTAACTCTTCACAAGCCCAAAGGTTCCACAGTTCATATCCATGTGCTGGCGGTCCACCGGACATTCCGGCAGCAGGGCAAGGGCCCTATCCTGATGTGGCGCTACCTGCAGTACCTACGCTGCCTGCCCTATGTGCGCCGTGCAGTGCTCATGTGCGAGGACTTCCTGGTTCCCTTCTACCAGAAGTCTGGCTTCAAGGTGCAGGGCCGCTGTTCCATCACGGTGGCATCACTAACCTTCACAGAGATGCAGTACCCTGTGAGGGGCCATGCCCTGATGCGGCGCAACAGTGAAGCTATTGGTTTTTCTCAGACTGTGTTATTATTGGAGGAACCGATTCAGAGGAGTGAGACTGCATTATTATTGGAGGAACAGACTCAGAGGACTGAGCCTGAGCCTGCTGATGTGTAAATCTTTTTTTACTGAGTAAGATATTAGATTCCTGCTGTACATATAAACTATGATGTAAAATAAAGTGATGTAAACATTTACATTTATATCTAAGATGGTAGTCTAAAGTGCACACCATACATGCATGACCAATGCAGGGAGTCTTTAAGCTTTATTACAATGTTTTAATTTAACGTTAGTTAATATGTGAATATTTCAACGTTAACTAGGTACATGCTAATGAATGTTAGAACAAATATTGTGTGACTTCTGTCTGTGTGAGATTATATTTTTACTGCAAATGTTCCCGTTTTATTTATTGTAAGTTTTGTCTGAAGGTTTGGGTTGCAAGCACCCTCCTCTCTGACGGTATATGGACTGACGTCACTGACTACCAGGCTTTAGCAGCTCAACCGTGCCTCTTTATCTCTATTAGTGGGCATTAGGTATACTGTAAACGTCTGAGGATTTACAAGAGGATCCTTTCATTGGACTGCCAGTAGATCTAGTGACTTAACAAGCCCGTTTTCATACGATGAGAAAAGTAGGCTACATCCACACCAATTTGGATTACTGTTTGTCTATTCATTTCCCTTTGGGTCACATGTGCAGAGCGTTAATCAAACCATGTAATATCTTCTCTTACTCCACCAGAACCTGTCTTACCCTTGAAACCAATCATATATTTAATAAATATGTTTTTGTACTGTTTTTgttattaaaaaatataataaagaTGATAATGTATT
>XM_021556128.2
ACTAAATAATATCATTTGTTGGCCTATACTAAGGAGACCGGTATAGAGAACCTGGCTGGAGCAAGAGTTGACCACAATTTCTCCATGCCTACTATATCTCCCAAATATACAGGAGAATATCCACTTTGCCATGTGTCAGTCAAACTCAAGGGATGACGATAGAAGCTAATACGCCGAGTTGTGGAAACAATTTCTATAATCTGTCACGTGACATAGTAATAATCACTGGCTTTATAATGAAGAGGTGGACGTATTTCAGGGCacgcaagagagagaggagggaggagataaagagagggtgagataagACAATaaggcaggtagagagagtgttCGGATGAGATTGCATCAGGTAAGTAAAGCAACGTTATTTTCAGTTACAGTGCTCTTGTCGGTTACCATATAATTTCAGAGTATCTGCATATGAGTATCTGCACATGACGACAATCAAATATCGAGGAAAAAATATATTGTAAATGCATTACATTCAGTGTGTTAATTCTCTATTCTGTGTTACATTAATTATTTAGGCAATTAATAAACAGGTTGTCACAACACTGCCATTTGTGCGTAAAGCAGCTGACCTCAGGTCGCTTAATTTCTGGTTCTAGTTAATTGCTCTCCACTCTCCCTCGCTCCAAATTCTAATATTTCATTCATGAGCACCGACGTCGTACTATTCATATTCTAAATGGTAAAATGACTCACATCTACATGGACCACATCCTATAAATACGGATTATACTCCCTATTGGTCATCTGTGCACAGGCTGACCCAACAAGAGGAGGAAATTGAAGATTAACCTTCGTGTAACAGCCAAGAGAGAAGACTTGTGCAAACAAACAACAATAGAAGCAACAGAAGAATATCGAAGTAATCCAACTGGAGTTATAAAAGTTGTAAAATGTCTCTAGTGGGCGCCCTGCCTTTCCTGAAACCGCGCCTATCCCCTTCTGTTTCTCCTGGGCGCCAAAGAAGACACACACTGCCAGCAAGCGAGTTCCGGCCGCTCAACACTCAAGATGCTATCAGCGTGTTCGAAATCGAGAAAGAGGCCTTTATCTCTGTGTCAGGAGACTGCCCGCTCCACCTTGATGAGGTGCGTCATTTCCTCATGCTGTGTCCAGAGCTGTCCATGGGCTGGTTTGAGGAGGGGAGACTAGTAGCCTTCATCATTGGGTCCCAATGGGACCAGGACAGACTCACCCTAGACGCCCTAACTCTTCACAAGCCCAAAGGTTCCACAGTTCATATCCATGTGCTGGCGGTCCACCGGACATTCCGGCAGCAGGGCAAGGGCCCTATCCTGATGTGGCGCTACCTGCAGTACCTACGCTGCCTGCCCTATGTGCGCCGTGCAGTGCTCATGTGCGAGGACTTCCTGGTTCCCTTCTACCAGAAGTCTGGCTTCAAGGTGCAGGGCCGCTGTTCCATCACGGTGGCATCACTAACCTTCACAGAGATGCAGTACCCTGTGAGGGGCCATGCCCTGATGCGGCGCAACAGTGAAGCTATTGGTTTTTCTCAGACTGCGTTATTATTGGAGAAACAGACTCAGAGGCTTGAGTCTGTGTTATTATTGGAGGAACCGATTCAGAGGAGTGAGACTGCATTATTATTGGAGGAACAGACTCAGAGGACTGAGCCTGAGCCTGCTGATGTGTAAATCTTTTTTTACTGAGTAAGATATTAGATTCCTGCTGTACATATAAACTATGATGTAAAATAAAGTGATGTAAACATTTACATTTATATCTAAGATGGTAGTCTAAAGTGCACACCATACATGCATGACCAATGCAGGGAGTCTTTAAGCTTTATTACAATGTTTTAATTTAACGTTAGTTAATATGTGAATATTTCAACGTTAACTAGGTACATGCTAATGAATGTTAGAACAAATATTGTGTGACTTCTGTCTGTGTGAGATTATATTTTTACTGCAAATGTTCCCGTTTTATTTATTGTAAGTTTTGTCTGAAGGTTTGGGTTGCAAGCACCCTCCTCTCTGACGGTATATGGACTGACGTCACTGACTACCAGGCTTTAGCAGCTCAACCGTGCCTCTTTATCTCTATTAGTGGGCATTAGGTATACTGTAAACGTCTGAGGATTTACAAGAGGATCCTTTCATTGGACTGCCAGTAGATCTAGTGACTTAACAAGCCCGTTTTCATACGATGAGAAAAGTAGGCTACATCCACACCAATTTGGATTACTGTTTGTCTATTCATTTCCCTTTGGGTCACATGTGCAGAGCGTTAATCAAACCATGTAATATCTTCTCTTACTCCACCAGAACCTGTCTTACCCTTGAAACCAATCATATATTTAATAAATATGTTTTTGTACTGTTTTTgttattaaaaaatataataaagaTGA

Function

NR:

description
retinal arylalkylamine N-acetyltransferase isoform X1

GO: NA

KEGG:

id description
K00669 AANAT; arylalkylamine N-acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124180.1 False 1547 mRNA 0.44 4 45651896 45653968
XM_021556128.2 True 2386 mRNA 0.42 3 45651905 45654777

Neighbor

gene id symbol gene type direction distance location
trnas-aga-60 NA coding downstream 125226 45526589 ~ 45526670 (-)
mchr1b LOC106601409 coding downstream 167218 45481000 ~ 45484678 (-)
LOC110486542 LOC106608160 coding downstream 318864 45300733 ~ 45333032 (-)
pik3r6b NA coding downstream 438241 45200981 ~ 45213655 (-)
LOC110485191 LOC106601377 coding downstream 455919 45194711 ~ 45195977 (-)
LOC110486550 LOC106601398 coding upstream 121 45654898 ~ 45677812 (-)
LOC110486551 fbf1 coding upstream 26081 45680858 ~ 45692892 (-)
LOC110486553 NA coding upstream 49230 45704005 ~ 45709228 (-)
LOC110486554 cygb coding upstream 55372 45710149 ~ 45716653 (-)
LOC110486556 LOC106601411 coding upstream 90176 45744953 ~ 45747109 (-)
G1179685 NA non-coding downstream 11485 45639890 ~ 45640411 (-)
G1179658 LOC105891918 non-coding downstream 24878 45607394 ~ 45627018 (-)
G1179629 NA non-coding downstream 102522 45548525 ~ 45549374 (-)
G1179630 NA non-coding downstream 103838 45547823 ~ 45548058 (-)
G1179625 NA non-coding downstream 113103 45538268 ~ 45538793 (-)
G1179692 NA non-coding upstream 4255 45659032 ~ 45659235 (-)
G1179693 NA non-coding upstream 4573 45659350 ~ 45661258 (-)
G1179695 NA non-coding upstream 6543 45661320 ~ 45661620 (-)
G1179700 NA non-coding upstream 14248 45669025 ~ 45669290 (-)
G1179621 LOC106607015 other downstream 119234 45531858 ~ 45532662 (-)
G1179619 LOC106601391 other downstream 121782 45529436 ~ 45530114 (-)
zgc:171844 LOC106607059 other downstream 458591 45182660 ~ 45193315 (-)
il-8 il-8 other downstream 564766 45085269 ~ 45087130 (-)
G1178996 NA other downstream 599872 45051576 ~ 45052024 (-)
LOC110486586 ubald2 other upstream 858680 46510585 ~ 46535713 (-)
LOC110486590 LOC105022923 other upstream 1228651 46827752 ~ 46915018 (-)
LOC110486593 LOC106606954 other upstream 1778019 47432406 ~ 47433949 (-)
LOC110486594 LOC106601485 other upstream 1807504 47460436 ~ 47466735 (-)
LOC110486618 LOC106606909 other upstream 2348254 47999581 ~ 48015951 (-)

Expression


Co-expression Network