LOC110486550 (LOC106601398)


Basic Information

Item Value
gene id LOC110486550
gene name LOC106601398
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45654898 ~ 45677812 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558242.2
GGAAAATAGCTGGTTGACTCCGGGTCCAACAGCAGTCAAACAGGCAGGGGCAGACAGCCGCAGTCATCCTCATCAACCGCACGTCGATCTGCGGATCACATCGTCCACGGGATGGATAACGACATCGCCGAACCTGACCCATCCCGGCAGCGCAATGGTGTCGTGGAAGGGCTTTATGGAGAATTCACGGACTCGCTCAACGCAAAGGTCAGATATTCTGTGAGTTTGACTGAGAGTGCTCTCACTATTCAAAAGATCTCATCGTCACCTGGACAGGATGAGGTGGTTTTCCATTTAGCTGACTGTCTTGGCTGCCTGGCTTATAAAGTGGAGGACGAAGCGGATGTTGGGGCGTTCTTTACAGCCTATTTCTACCCGTTCAAGAGGCGATGGATAAGCACAGGCATGGCCCGGCAGAAAGTAGAGCAGTGCTTTCGGGTCGCAATGGTCCAGGACCCTCTCACTAATCTTCAAGAGGCAGAGAGATGGGCGCGTGCCATCAGAGAGGCTTCTATCCGCCAGATACCCCGAAGACATGatgtgAAGTATTATGAGCTACGGCGGCCCTGCAGGGTCATGGTTCTGGTGAACCCCCAGAGTGGGCGGGGCCAGGCTCTCCAGCTTTTCTCCGGGCAAATCGAGCCCATGCTCACCGAGGCTTCAGTCCCCTACACATTGGTCATCACTGAGCACCAGAACCATGCGAGGGACCTGGTGAGAGAGACTGATCTGTCACAGTGGGACGCTCTGGTCATCCTGTCAGGAGACGGGCTGCTGTTCGAGGTGTTGAATGGTcttctggagagagaggactgggaggAGGCCATCCAGACCCCACTGGGCATCTTACCAGGGGGCTCGGGCAATGCCCTGGCAGCCTCTGTCCACCACTACACTAAGTCTCCCCCGGCCTGGGGTAAGGAGCTGCTGCTGAGCTGTGGCTTCCTGCTGTGTAAAGGCCTGGTGACTCGGCTCGACCTGGTCTCTGTCCACCTGGCCTCCAGCCAGCGcatcttctccttcctctccctggcCTGGGGCTTCGTGGCCGACGTCGACATTGAGAGCGAGAAGTACCGCCTCGTTGGCCCCATGCGATTCCTGGTGGGTACGCTGCTGCGCCTGGCCTCCCTCAAAGTATATCAAGGTAGGCTGGCATACCTGCCTGCTCCTCCCTTCACACCCCAGaactcctccctctgctcctctctaccCTGTGGGCCCAACAGCTCCCCCAATCAGAACTCTCGCCACAACCACATCACAAACTCCAACCACAGCACAAACTCCAACCACAACACCGCCCACAACTCCTCCAACATTGCCAACACAACCATGAGGACCGAGCCCCAACCAGTCAACCAGAAGGGGCCTCCTGACTCGCTCCTAGCAGACCTGGAGCAGCCGGTGCCTGATCATTGGACAGTAGTGAAGGAGGAAGACTTTGTACTGGTATTGGCCATGTTCCAGTCCCACTTGGCTGAGGACCTGTTTGCCGCCCCTGGTGCCGCGGCAGACGACGGCTTCATCCACCTGTTGTATGTGCGTGCAGGCATCTCCAGACTAGCTCTGCTCACACTCTTCATGACCATGGAGAAAGGGGGGCACCTGGCTATTGGCTGCCCACACCTTGTGTATGAGAGGGTGAAGGCCTTTCGCCTGGAGCCTCTGTCCCCCGAGGGAGCGATCACTGTGGACGGGGAGATGGTGGAGTACGGGCCAGTACAGGCCCAGGTTCATGAAGGAATCGCCAGGCTCATCTCAGGCTGAGAATCTACTTGGAGAGTTTGTCCTCCCCACAGCTCTGACTTCTTGCTCCCTTTCTTACtctgtctactgtatatacaaagtGCCAAAGACATTATATCAGCCTTTGGAAAATCCCCCCTCTTTTTTTCTACAGATACATTCAGTATCTATCTCTGTGTCCTGTTGTTTAGAgatccctccctttcctctccatgCTTCATTCAGGGTCAAAGCCATGGATGTTCTTGCAGCTGGATGGTCTCAgctaagagtgtgtgtgtatgatagtgTTTTGTGAGCGGTGTGTTTAGTAGGGAGGGGCCCATGGCTGTGGAGTACCTTGTGTACACTTATTAGTGTGATACAAGTGAAGAGAAGCACATTCTTCTGTCTCGCAAGGATGTGGCAGGCAACCAGCTCTACGCCCGCTATCTAGCCCCGGGGTAATCATTCTGTGGAGGATGAGACACAGGCCTGACATGAAGGCCTTCCCCCCTCAGGATATACTGTTCGAGTCATGGATGTAGGTTCTCTATGGAGAAGCACAACGTTGGAGAATGCAGCATTGTAAACCTCCACCAATGACATTAGGTTACTCTTCTCCCTCTCACCAGTGAAAACCTCCCCTTTACCTCCGTGTTTAATGGATGGGGTGGAAGGGGTTAGGTGCTAGTGAGGTTGTGTTAAAGCAGCATGGAGGTTCAGGAACCTGGCCAGCTGAGGTTACCTTCCTATATATCTCGCCTGTCTCCtaccctgctgctgctgcagctCAAACCAACATGCTTCTTGGACCACCTtcttcctgacacacacacacaaacacacaggcttgACACTCCCTTTCAGATCTGGAGCACTCAGCAAGGAGGGGGATGGTCTCGTCTGCGACATATGACCCCTTCTAGCTGTGTTAAGGTTgtactctctcctccttcacaagATGTTGGAGCCATCAGCACCTAATGTGTCCTTATTTTGAAGCTTTATGGGTGAATGAAAAATACTAGCGGATAGAACTACAAGCAGTTGAAGATACAGCACCATTGTTGATTTTTATGAACGGTTTTATTGTAGATAAAATAATAGAAATATTTATGTTATTTTCTGTCCAAGCACACACTAAGAAGGGAAACATGGCTTTGCACTACGCAGCACTGCATGGGTCAGTGGGTTTTGCACATTGACTCGATCAATAAGAGTTGGAGCGACCAGGCCAGAGTGCTGTGCTGTCTACTGGGGCCTTTTTCTTGTCGGGGTGGAGATGATGAGCATTAGTGCACAGGAGCATTAGTGCACAGGAGCAATTAGTGCACAGGAGCATTAGTGCACAGGAGCATTAGTGCACAGGAGCATTAGTGCACAAGCGCAAATGTGAGCATTATCATCAGTTCTACTCGCACCAGTTCATGCCAGGTCGGGTTCACCCCAGAGATATAACAATTACTGGTTTAACTAATCCTAGAGCACACACTTGGTTAGGTTTGACTCAAAATGTCATATGGGTGGAAGGGTTTTAATGTATAATGAATCTAAAAGGATGCTTAAAATGACTCTACCTGAAGGTATGCTGACTGCAGATGTAACATTAACTTCTCCCATTCTGATTTCAAACTTCCATGTCTGTGCCTGTACCTGACTTTGATATGCCTTTAGATAAATACAAGTTTAagtttcatttgtcacatgcacaagtacagtgaaatgcttaacttgaAAGCCCTACCCGACAGTGCAGTATTATATACCTCAGGTACGGTAGCTCATGCTAGACTGTGTATactgagtatatatatatataagtataataaaaaaaattaaacaagggggaaaaacacaagaaagaagaaagaagagaggaagctatatacagtgtCAGTGCCAGTACCAAATGTACAACGTACAGAGATACTGGAGTTTTGAGGTAGATAAGAAAATGTAGGCAGGGATTAAGAGAAAGTGACTGGAAGCAGGATAAAtcatttattattataatattaaacATACTGTATGGTACCTTTTACCCCATACatacctatctacctacctaatCCTCATTTGTCAGGCTCTGCTGGTGGTGTTGACAAGGTCATAGACCATGCATACACAAGTTAAAGCACATATCCAAATTGAGAGATTAGCTATGGAAATTCTTTCAATGTGGCCCGTTCTGGGACACCTCACTGCTCTTTATGCAGTGGGAGGGGTCCCCCTAGTGGATTTACCTTAACCAGTCATTGCAGTGTAAGTGGTGGAAGTTCTGACAAAGTACTTGCACATTTGTTTCTATGGTacaacagtagtactgtataaAATCTTATGATAGCTCACTTTCATTATTTGTATGTTTGGTAGCATTGATTCACTAGCATACTGGTATCCAGGTTATGAAAACAATTACGAGCCATTTTGAATTCAACTACAATCACTTCATAATCAATTCCTAATCATATTTCCATCTGAATATCAAAAACCTGCATTTGAATCACCTCAGGTACGGTAGCTCATGCTAGACTGTGTATACTGAGTATCATCTCTCCTCAACCGAACAGACAAGCGGACATCCACTGCTGACCCTGGCTGACCCTAGTGACTGTTATGTAATATGTACAAAAAACAACAGGTCTCAACACATCTGAGTGGAGTAATTGCAATTGTGTTGAACTACTGTTATCTTCTCTGTCCTGTACCCTTGGCTGGTAGGGTGGACTGTGGAGTGACTACATCatagtactgttattaatatGCAAATACTGCTGTAGTCCTCTCATTGCATTCATGTCATTTTTTATGTCATCATTACCGTGTAGGAGAGAGATCTATATTTTTCCAGTGCTTCATTTAGTAAGAACCACAACTAAATACATGAATCATGCTGTATCGACTGTCTGAATGGTAATACAATTCCCAAATTCTTCAAGAGTTCTGTCTTGTTCATCATTAGCAGCCATCTTTTCATCAACACTGTTAATTGTTTTTATATAAAGTGAAAATGATAACCCAGTGGTTAATATTGTCCATTACAGGTGTTGTGTATTTGAGGGTGTATTAAAGTTCTGCTT
>TU1345360
AGGTCGGGTTCACCCCAGAGATATAACAATTACTGGTTTAACTAATCCTAGAGCACACACTTGGTTAGGTTTGACTCAAAATGTCATATGGGTGGAAGGGTTTTAATGTATAATGAATCTAAAAGGATGCTTAAAATGACTCTACCTGAAGGTATGCTGACTGCAGATG

Function

GO:

id name namespace
GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0016310 phosphorylation biological_process
GO:0003951 NAD+ kinase activity molecular_function
GO:0004143 diacylglycerol kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558242.2 False 4811 mRNA 0.48 5 45654898 45677812
TU1345360 True 169 lncRNA 0.39 1 45656377 45656545

Neighbor

gene id symbol gene type direction distance location
LOC100135782 LOC106607000 coding downstream 121 45651896 ~ 45654777 (-)
trnas-aga-60 NA coding downstream 128228 45526589 ~ 45526670 (-)
mchr1b LOC106601409 coding downstream 170220 45481000 ~ 45484678 (-)
LOC110486542 LOC106608160 coding downstream 321866 45300733 ~ 45333032 (-)
pik3r6b NA coding downstream 441243 45200981 ~ 45213655 (-)
LOC110486551 fbf1 coding upstream 3046 45680858 ~ 45692892 (-)
LOC110486553 NA coding upstream 26195 45704005 ~ 45709228 (-)
LOC110486554 cygb coding upstream 32337 45710149 ~ 45716653 (-)
LOC110486556 LOC106601411 coding upstream 67141 45744953 ~ 45747109 (-)
LOC110486561 LOC106601408 coding upstream 290252 45968064 ~ 45977403 (-)
G1179685 NA non-coding downstream 14487 45639890 ~ 45640411 (-)
G1179658 LOC105891918 non-coding downstream 27880 45607394 ~ 45627018 (-)
G1179629 NA non-coding downstream 105524 45548525 ~ 45549374 (-)
G1179630 NA non-coding downstream 106840 45547823 ~ 45548058 (-)
G1179625 NA non-coding downstream 116105 45538268 ~ 45538793 (-)
G1179761 NA non-coding upstream 124091 45801903 ~ 45802188 (-)
G1179779 NA non-coding upstream 151480 45829292 ~ 45829928 (-)
G1179830 NA non-coding upstream 223238 45901050 ~ 45901314 (-)
G1179842 NA non-coding upstream 228561 45906373 ~ 45906656 (-)
G1179621 LOC106607015 other downstream 122236 45531858 ~ 45532662 (-)
G1179619 LOC106601391 other downstream 124784 45529436 ~ 45530114 (-)
zgc:171844 LOC106607059 other downstream 461593 45182660 ~ 45193315 (-)
il-8 il-8 other downstream 567768 45085269 ~ 45087130 (-)
G1178996 NA other downstream 602874 45051576 ~ 45052024 (-)
LOC110486586 ubald2 other upstream 835645 46510585 ~ 46535713 (-)
LOC110486590 LOC105022923 other upstream 1205616 46827752 ~ 46915018 (-)
LOC110486593 LOC106606954 other upstream 1754984 47432406 ~ 47433949 (-)
LOC110486594 LOC106601485 other upstream 1784469 47460436 ~ 47466735 (-)
LOC110486618 LOC106606909 other upstream 2325219 47999581 ~ 48015951 (-)
G1179692 NA non-coding upstream 2487 45659032 ~ 45659235 (-)
G1179693 NA non-coding upstream 2805 45659350 ~ 45661258 (-)
G1179695 NA non-coding upstream 4775 45661320 ~ 45661620 (-)
G1179700 NA non-coding upstream 12480 45669025 ~ 45669290 (-)

Expression


Co-expression Network