LOC110486552


Basic Information

Item Value
gene id LOC110486552
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45678838 ~ 45681070 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468081.2
CCATAGTCACAAATTCAGTCTTTCGAACGTATGTAGTGCAGGGAATATGTGGCCGGTTTAATGtttggtgtgttttttttatgttcgcgggggggggggaataactaTCTGTATCAACTCATAGCAAAATGCTTCAAATACACTACGAACTCCAGTGTCGACCAGTCACCATGAGTGTAAATTAGCCGTTTGAACGTGGATGGACTTCAGAAGTCCTATGGGCTGTGTCCACTCAAAATTGTTGTGGCCTCCGAGGGTGACGTGACAGTTGCTTGGTCTGCCAACCTGGGTGTGATTCCATGAGAATGTTCCAATGAAGTTACTCCCATGAGAGCAGTGCCGGTGGGTCAAGAGGACAGTTAATTGGTCTGCCAACCTGGATGTGAACCCCTGAAAATACAGCAAGTAATGCCATTGGGATCAGgcaaTGGGGTCAGACGTTGTGCCAAGGACCCGACTCAAGAACTGAAATTCACCAAATTAATGATCAGTGACTGACACAAAGAAACTAGTTCAATGCAAACATTAGAGAATGTCAAGTTTTAATGGTGTACTTAATACCAGAAAGTCACAGGGCTTTGAGCCCCACAGTTAATCAGTGTGAAAGGCTGAATTGTAAGGTGCTTTCTTGAGTGTGTCCAGGAAGAACTGCTCATCCTGCAGAAAGTCACGATCCTAAGAAGATAAAACAAGTACATTTATCTACAATAAAGATTTTGAAACTA
>TU1345101
GTGCAGGGAATATGTGGCCGGTTTAATGtttggtgtgttttttttatgttcgcgggggggggggaataactaTCTGTATCAACTCATAGCAAAATGCTTCAAATACACTACGAACTCCAGTGTCGACCAGTCACCATGAGTGTAAATTAGCCGTTTGAACGTGGATGGACTTCAGAAGTCCTATGGGCTGTGTCCACTCAAAATTGTTGTGGCCTCCGAGGGTGACGTGACAGTTGCTTGGTCTGCCAACCTGGGTGTGATTCCATGAGAATGTTCCAATGAAGTTACTCCCATGAGAGCAGTGCCGGTGGGTCAAGAGGACAGTTAATTGGTCTGCCAACCTGGATGTGAACCCCTGAAAATACAGCAAGTAATGCCATTGGGATCAGgcaaTGGGGTCAGACGTTGTGCCAAGGACCCGACTCAAGAACTGAAATTCACCAAATTAATGATCAGTGACTGACACAAAGAAACTAGTTCAATGCAAACATTAGAGAATGTCAAGTTTTAATGGTGTACTTAATACCAGAAAGTCACAGGGCTTTGAGCCCCACAGTTAATCAGTGTGAAAGGCTGAATTGTAAGGTGCTTTCTTGAGTGTGTCCAGGAAGAACTGCTCATCCTGCAGAAAGTCACGATCCTAAGAAGATAAAACAAGTACATTTATCTACAATAAAGATTTTG
>TU1345102
GTGCAGGGAATATGTGGCCGGTTTAATGtttggtgtgttttttttatgttcgcgggggggggggaataactaTCTGTATCAACTCATAGCAAAATGCTTCAAATACACTACGAACTCCAGTGTCGACCAGTCACCATGAGTGTAAATTTGTTGTGGCCTCCGAGGGTGACGTGACAGTTGCTTGGTCTGCCAACCTGGGTGTGATTCCATGAGAATGTTCCAATGAAGTTACTCCCATGAGAGCAGTGCCGGTGGGTCAAGAGGACAGTTAATTGGTCTGCCAACCTGGATGTGAACCCCTGAAAATACAGCAAGTAATGCCATTGGGATCAGgcaaTGGGGTCAGACGTTGTGCCAAGGACCCGACTCAAGAACTGAAATTCACCAAATTAATGATCAGTGACTGACACAAAGAAACTAGTTCAATGCAAACATTAGAGAATGTCAAGTTTTAATGGTGTACTTAATACCAGAAAGTCACAGGGCTTTGAGCCCCACAGTTAATCAGTGTGAAAGGCTGAATTGTAAGGTGCTTTCTTGAGTGTGTCCAGGAAGAACTGCTCATCCTGCAGAAAGTCACGATCCTAAGAAGATAAAACAAGTACATTTATCTACAATAAAGATTTTG

Function

NR:

description
PREDICTED: fas-binding factor 1 isoform X15

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468081.2 False 725 mRNA 0.44 7 45678838 45681070
TU1345101 False 684 lncRNA 0.44 7 45678873 45681064
TU1345102 True 628 lncRNA 0.44 6 45678873 45681064

Neighbor

gene id symbol gene type direction distance location
LOC110486549 LOC106607014 coding upstream 31989 45632656 ~ 45646849 (+)
LOC110486548 LOC106607064 coding upstream 51818 45621533 ~ 45627020 (+)
LOC110486546 LOC106601396 coding upstream 64219 45559934 ~ 45614619 (+)
LOC110486547 LOC106607066 coding upstream 119237 45555818 ~ 45559601 (+)
LOC110485192 LOC106601391 coding upstream 124735 45529398 ~ 45554103 (+)
LOC110486555 LOC106606986 coding downstream 49397 45730467 ~ 45742507 (+)
LOC110486558 LOC106601405 coding downstream 132062 45813132 ~ 45881286 (+)
LOC110486560 LOC106606997 coding downstream 231185 45912255 ~ 45931007 (+)
LOC110486562 peca1 coding downstream 449508 46130578 ~ 46138965 (+)
LOC110486563 LOC106606981 coding downstream 483924 46164994 ~ 46167292 (+)
G1179453 NA non-coding upstream 7887 45670663 ~ 45670951 (+)
G1179452 NA non-coding upstream 8851 45669560 ~ 45669987 (+)
G1179448 NA non-coding upstream 15716 45662862 ~ 45663122 (+)
G1179445 NA non-coding upstream 22799 45655027 ~ 45656039 (+)
G1179446 NA non-coding upstream 24342 45653767 ~ 45654496 (+)
G1179465 fbf1 non-coding downstream 9426 45690496 ~ 45690869 (+)
G1179879 LOC106601408 non-coding downstream 287000 45968070 ~ 45970177 (+)
G1179880 LOC106601408 non-coding downstream 293142 45974212 ~ 45975156 (+)
G1179952 NA non-coding downstream 399215 46080285 ~ 46080840 (+)
G1179953 NA non-coding downstream 400250 46081320 ~ 46085758 (+)
G1179362 NA other upstream 215895 45462588 ~ 45462943 (+)
G1179156 NA other upstream 365805 45312330 ~ 45313033 (+)
LOC110486526 smarca4 other upstream 709119 44967368 ~ 44996127 (+)
LOC110485188 LOC106601310 other upstream 752521 44878675 ~ 44943951 (+)
LOC118936304 LOC106601427 other downstream 492958 46173911 ~ 46176562 (+)
G1180047 NA other downstream 558074 46239144 ~ 46273601 (+)
LOC110485193 LOC106601421 other downstream 650648 46302751 ~ 46336386 (+)
G1181472 NA other downstream 1693093 47374163 ~ 47374477 (+)
tmem100a LOC106606948 other downstream 1787046 47468012 ~ 47471205 (+)

Expression


Co-expression Network