LOC110486553


Basic Information

Item Value
gene id LOC110486553
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45704005 ~ 45709228 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468084.2
TTGCCACTAGCTTGAGAGCCACAGGAATCATTCTACTCTCCCTCAATGGGAGGAATAGTCCCAGTGTTCTAACCCAGCTGCAGTCCCAAAACGGGATACATGTGATAGGACCATGTGCACCACTACGATGGTCCTCACCACTATTGCTGTCATCCTATACAGAAAGTTCTCAAACCGAGTCGAACCGCACAATGTTGATGATACCAATGAGGAGCCCTACATGAAGAGCAATGGAGTCGACCCTAAGAAATAATAACTCTCACAGCAGATGTAGCTCTAGTCTACAGTCTACATGGTAGATAAAAGTAAAATAACAAGTAGCCTACAGAACTGAATGCTGTCTGATATTTCAAGATGTGGAAAGGAAtgcaagaggaggaggggaggagagagggaggtaaaatGGAACATGTGGCAGAAGTAGAGATGCATGAAGTGAGAAGATGTATGCCCGTTCCACATTTAGCTTTCAAGTACTCACCACTACGCTGCTCCCACTAAATTATTTAGTGGCAGAACAACAATCTATCAACTCTGTGGAAGGTTATTATAAATGCATTACCTCCCCAAGCCTACCAGTTCAATGGAGTCGTGCAGGGCCTCATAAATATGGGTCAATAAAGGGACACACACAAAAGACTCAGGATGAATGAAATAGGCTTTATTGTTTTAGTGTGAACTTTCACCCTACCTGTGCGTAGAAGCTCTCAGATCTGAGGCGGGTCTTTTCAAATTAAGAGACACACGAACTGAAGACAGGTCTTCAACTTGATGGCTACACATCTGTCTAGTTTGACAGGCAAACATCCTATAACCTAAACCCCAAAAGGGGTATGTTacagacaacagcagcagctcCATCTCAGTCATCTGGAATTGATGCAGCTGGCGCCATTGCCTCTCCAGTGTTCAGAGACTGTGCATTGCCATGTGAAAAGCATCTGGAATTAATAACAGGCCAGGGCAAGCCAGCACAACaagaatattttttttatcacatCTTCAATCCCCCATCTGTCCTGCAGATCCCTCTAATGTTATTTCAGCATAGGATTGTCCCAGGaggcctccctcctccttcttgaGGCAGGAGAATTCAATTTCTGGGAATGAAACCTCAACCAATCACATCTTGGTGGAGCTGAATCTACAGAACAACATCTTGGTTTATTGtgggtttcttgttttgtagagtTGGATGTTTTATTAAGGCTTAAAGTAGGCCAATGATCAATGTAAAACTGTTGGAATGTGTTCCGTGCCTCAAAAAACAGTAGTTTTCTTTGATTGTCAAATAGGGCTGTACAGATTTGTGTCCATTGAGTAAATTATAATGGCTTTTAAAGAAGAGGCAGAACTTTAAAATGATGCACTTTAAATGGTAGGATGTTTTTGGTAATCTTTCACATTCCTAAAGTGACTTAAATATTGTTTTTGACTGAAACAAGGAGCTTTGGATAAGCAATATGTTTAAAATGAAATCGCTTGAACCCATAAATATTTGACCAAATGTCAGAGAACATAAATGTCTTGTAGTGAAGATGTGTGTGCCATGGCTACTAAATCTAAAGAGCAATGGAGAGAGGCCTCTGTTTTGTACCTCTATGTCAACCCTCTCCAGTCACAATGCATTGCTGCAAGTGAACCACCTCTTCCCCTACACCTTTAGCGTCCCGTTGGTCCCATTGAAGGAGCAACAGTCAGAAAGAGGTGTCTGCCTATGTTCAAAACACAGCTCCAACTTTACTTGACATTTTTAAAAGCAGCTAGGTGTCACCTTAGTAAACGTCTGCCTTGAGTCAGAgcttggtgatgatggtggttacTGGTAGGACGGTTTGTTACAGAATCGACTTTCCTTTGACATGACATCTTACAACTTGCTTCTTCTCTCTAAAGCAAACATTATGTATGTTCTTTGCTCTCCCCACCTGATCAAATAAAGAGAT
>TU1345324
ACAGGAATCATTCTACTCTCCCTCAATGGGAGGAATAGTCCCAGTGTTCTAACCCAGCTGCAGTCCCAAAACGGGATACATGTGATAGGACCATGTGCACCACTACGATGGTCCTCACCACTATTGCTGTCATCCTATACAGAAAGTTCTCAAACCGAGTCGAACCGCACAATGTTGATGATACCAATGAGGAGCCCTACATGAAGAGCAATGGAGTCGACCCTAAGAAATAATAACTCTCACAGCAGATGTAGCTCTAGTCTACAGTCTACATGGTAGATAAAAGTAAAATAACAAGTAGCCTACAGAACTGAATGCTGTCTGATATTTCAAGATGTGGAAAGGAAtgcaagaggaggaggggaggagagagggaggtaaaatGGAACATGTGGCAGAAGTAGAGATGCATGAAGTGAGAAGATGTATGCCCGTTCCACATTTAGCTTTCAAGTACTCACCACTACGCTGCTCCCACTAAATTATTTAGTGGCAGAACAACAATCTATCAACTCTGTGGAAGGTTATTATAAATGCATTACCTCCCCAAGCCTACCAGTTCAATGGAGTCGTGCAGGGCCTCATAAATATGGGTCAATAAAGGGACACACACAAAAGACTCAGGATGAATGAAATAGGCTTTATTGTTTTAGTGTGAACTTTCACCCTACCTGTGCGTAGAAGCTCTCAGATCTGAGGCGGGTCTTTTCAAATTAAGAGACACACGAACTGAAGACAGGTCTTCAACTTGATGGCTACACATCTGTCTAGTTTGACAGGCAAACATCCTATAACCTAAACCCCAAAAGGGGTATGTTacagacaacagcagcagctcCATCTCAGTCATCTGGAATTGATGCAGCTGGCGCCATTGCCTCTCCAGTGTTCAGAGACTGTGCATTGCCATGTGAAAAGCATCTGGAATTAATAACAGGCCAGGGCAAGCCAGCACAACaagaatattttttttatcacatCTTCAATCCCCCATCTGTCCTGCAGATCCCTCTAATGTTATTTCAGCATAGGATTGTCCCAGGaggcctccctcctccttcttgaGGCAGGAGAATTCAATTTCTGGGAATGAAACCTCAACCAATCACATCTTGGTGGAGCTGAATCTACAGAACAACATCTTGGTTTATTGtgggtttcttgttttgtagagtTGGATGTTTTATTAAGGCTTAAAGTAGGCCAATGATCAATGTAAAACTGTTGGAATGTGTTCCGTGCCTCAAAAAACAGTAGTTTTCTTTGATTGTCAAATAGGGCTGTACAGATTTGTGTCCATTGAGTAAATTATAATGGCTTTTAAAGAAGAGGCAGAACTTTAAAATGATGCACTTTAAATGGTAGGATGTTTTTGGTAATCTTTCACATTCCTAAAGTGACTTAAATATTGTTTTTGACTGAAACAAGGAGCTTTGGATAAGCAATATGTTTAAAATGAAATCGCTTGAACCCATAAATATTTGACCAAATGTCAGAGAACATAAATGTCTTGTAGTGAAGATGTGTGTGCCATGGCTACTAAATCTAAAGAGCAATGGAGAGAGGCCTCTGTTTTGTACCTCTATGTCAACCCTCTCCAGTCACAATGCATTGCTGCAAGTGAACCACCTCTTCCCCTACACCTTTAGCGTCCCGTTGGTCCCATTGAAGGAGCAACAGTCAGAAAGAGGTGTCTGCCTATGTTCAAAACACAGCTCCAACTTTACTTGACATTTTTAAAAGCAGCTAGGTGTCACCTTAGTAAACGTCTGCCTTGAGTCAGAgcttggtgatgatggtggttacTGGTAGGACGGTTTGTTACAGAATCGACTTTCCTTTGACATGACATCTTACAACTTGCTTCTTCTCTCTAAAGCAAACATTATGTATGTTCTTTGCTCTCCCCACCTGATCAAATAAAGAGATTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468084.2 False 1949 mRNA 0.42 4 45704007 45709228
TU1345324 True 1931 lncRNA 0.42 4 45704005 45709208

Neighbor

gene id symbol gene type direction distance location
LOC110486551 fbf1 coding downstream 11115 45680858 ~ 45692892 (-)
LOC110486550 LOC106601398 coding downstream 26195 45654898 ~ 45677812 (-)
LOC100135782 LOC106607000 coding downstream 49230 45651896 ~ 45654777 (-)
trnas-aga-60 NA coding downstream 177337 45526589 ~ 45526670 (-)
mchr1b LOC106601409 coding downstream 219329 45481000 ~ 45484678 (-)
LOC110486554 cygb coding upstream 921 45710149 ~ 45716653 (-)
LOC110486556 LOC106601411 coding upstream 35725 45744953 ~ 45747109 (-)
LOC110486561 LOC106601408 coding upstream 258836 45968064 ~ 45977403 (-)
LOC110486567 LOC106606966 coding upstream 491798 46201026 ~ 46211745 (-)
recql5 LOC106601412 coding upstream 502950 46212178 ~ 46228955 (-)
G1179700 NA non-coding downstream 34717 45669025 ~ 45669290 (-)
G1179695 NA non-coding downstream 42387 45661320 ~ 45661620 (-)
G1179693 NA non-coding downstream 42749 45659350 ~ 45661258 (-)
G1179692 NA non-coding downstream 44772 45659032 ~ 45659235 (-)
G1179761 NA non-coding upstream 92675 45801903 ~ 45802188 (-)
G1179779 NA non-coding upstream 120064 45829292 ~ 45829928 (-)
G1179830 NA non-coding upstream 191822 45901050 ~ 45901314 (-)
G1179842 NA non-coding upstream 197145 45906373 ~ 45906656 (-)
G1179843 NA non-coding upstream 197451 45906679 ~ 45906902 (-)
G1179621 LOC106607015 other downstream 171345 45531858 ~ 45532662 (-)
G1179619 LOC106601391 other downstream 173893 45529436 ~ 45530114 (-)
zgc:171844 LOC106607059 other downstream 510702 45182660 ~ 45193315 (-)
il-8 il-8 other downstream 616877 45085269 ~ 45087130 (-)
G1178996 NA other downstream 651983 45051576 ~ 45052024 (-)
LOC110486586 ubald2 other upstream 804229 46510585 ~ 46535713 (-)
LOC110486590 LOC105022923 other upstream 1174200 46827752 ~ 46915018 (-)
LOC110486593 LOC106606954 other upstream 1723568 47432406 ~ 47433949 (-)
LOC110486594 LOC106601485 other upstream 1753053 47460436 ~ 47466735 (-)
LOC110486618 LOC106606909 other upstream 2293803 47999581 ~ 48015951 (-)

Expression


Co-expression Network