LOC110486554 (cygb)


Basic Information

Item Value
gene id LOC110486554
gene name cygb
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45710149 ~ 45716653 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558252.2
tctcgcttTTTAGTGTGttcctcattcactcactcagaaAAGGTTGAGAGAGGGTCTCTCAACAAGAGAAGGGTAATAAAAAGGGGATTGTTTGAACGAGAGAGACTGTGTAAACAAAAGGAACTGGGTTTTGTTCTTGGGGACTCTTATCACCTGTCTTCAACACACCACTCCTGCAGCACTATAGGACTCCTGGATGGAGAGGCAGCAGGGAGAGGTAAATGCAGATCGCCTGGAGCGCCTAGATCCACTCtgtgactcagagagagagatgatcaaGGACACCTGGGCCAAAGTCTACCAGAACTGTGATGATGTCGGGGTGGCCATTCTCATCAGGCTCTTTGTGAACTTCCCCTCCTCCAAGCAGTACTTTAGCCAGTTCCAACAGGTGGAGGACCCTGAGGAGCTGGAGAGGAGTGCCCAGCTCAAGAAGCACTCCCGCAGGGTGATGAACGCCATCAACACCCTGGTGGAGAACCTCCATGACGGGGACAAGATGGTGGCTGTTCTGAAGCTGCTGGGCAAGGCCCATGCACTCAGACACAGGGTGGAGCCTGTCTACTTCAAGatcCTGTGTGGGGTGATTCTGGAGGTGCTGGTTGAAGACTTTCCTGATTACATCACTCCAGAGGTGGCAGTGGCGTGGACCAAACTGCTGGATGCCATCTACTGGCACGTGAAAGGCGTGTATGAGGAGGTGGGCTGGGCCTCCAGCTCTGCTGTGTgaaccatctgtctgtctgtgtcaaaGTAACCGTCAGTGACTACTGTGGACTCCCGGAGACTGACTACTACCGGGCCTTGGCTTAGGAGCAGGACGATCTACGTCTGACCATTCAAGGGACGAAATGTATCTTTCCAAAGCTCATAGAATCTTCCTATGTATCATCATGGCTCCCTCCCTGTATCTTTCCCATGCCCCACTGTGGGGTGTGTTCTTCTGATGGACTCTCTTATGAATGATGGGGTGGTGGTTTGTGCTGACTTTGGTTGGAATGTGTGTGAATAGCCATATGTGTGTATGCATTTATGTTTGAGGTAGAGCATAAGCCCTACACAGACTGCTAGAATCGTGGATGTCTCTTCAGTTACATTGCCATGAGATTATGTTGAAGATTGAGGATTGGCAGACATAAGAACTGTTTTATGTCATAGAGACAGTCTAAACGTACACGCTCATACACATTTTTATCTTTACACCAAAAACAGATATACAGGGGAGAGTATGTCTTCTGCTACTCACACAGTTGTTAACCTGGGTTGTGCCTTTCTTTATTTCTGACACTGACATTAAGATCTTTGTTCATTTCATGTGATGCTTTGCTGGTGTTTCCTGGGCAGTATATTGTATTTCAGAATCAGTCACCCTTCAGAATCAGATCCACTTTACTGTCACAAAATGAGAAATAATAACTTGTGAGGTGTGGTGTCCACATTTAAgcaatgtaaatgtttttttttttatcaatgtcTGTATCTGCATAATAACATAATAAAACAATTATGATCTATAA

Function

symbol description
cygb Predicted to enable peroxidase activity. Predicted to be involved in response to oxidative stress. Predicted to be located in cytosol.

NR:

description
cytoglobin-1-like

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558252.2 True 1517 mRNA 0.46 3 45710149 45716653

Neighbor

gene id symbol gene type direction distance location
LOC110486553 NA coding downstream 921 45704005 ~ 45709228 (-)
LOC110486551 fbf1 coding downstream 17257 45680858 ~ 45692892 (-)
LOC110486550 LOC106601398 coding downstream 32337 45654898 ~ 45677812 (-)
LOC100135782 LOC106607000 coding downstream 55372 45651896 ~ 45654777 (-)
trnas-aga-60 NA coding downstream 183479 45526589 ~ 45526670 (-)
LOC110486556 LOC106601411 coding upstream 28300 45744953 ~ 45747109 (-)
LOC110486561 LOC106601408 coding upstream 251411 45968064 ~ 45977403 (-)
LOC110486567 LOC106606966 coding upstream 484373 46201026 ~ 46211745 (-)
recql5 LOC106601412 coding upstream 495525 46212178 ~ 46228955 (-)
LOC110486569 LOC106601418 coding upstream 513731 46230384 ~ 46235927 (-)
G1179700 NA non-coding downstream 40859 45669025 ~ 45669290 (-)
G1179695 NA non-coding downstream 48529 45661320 ~ 45661620 (-)
G1179693 NA non-coding downstream 48891 45659350 ~ 45661258 (-)
G1179692 NA non-coding downstream 50914 45659032 ~ 45659235 (-)
G1179761 NA non-coding upstream 85250 45801903 ~ 45802188 (-)
G1179779 NA non-coding upstream 112639 45829292 ~ 45829928 (-)
G1179830 NA non-coding upstream 184397 45901050 ~ 45901314 (-)
G1179842 NA non-coding upstream 189720 45906373 ~ 45906656 (-)
G1179843 NA non-coding upstream 190026 45906679 ~ 45906902 (-)
G1179621 LOC106607015 other downstream 177487 45531858 ~ 45532662 (-)
G1179619 LOC106601391 other downstream 180035 45529436 ~ 45530114 (-)
zgc:171844 LOC106607059 other downstream 516844 45182660 ~ 45193315 (-)
il-8 il-8 other downstream 623019 45085269 ~ 45087130 (-)
G1178996 NA other downstream 658125 45051576 ~ 45052024 (-)
LOC110486586 ubald2 other upstream 796804 46510585 ~ 46535713 (-)
LOC110486590 LOC105022923 other upstream 1166775 46827752 ~ 46915018 (-)
LOC110486593 LOC106606954 other upstream 1716143 47432406 ~ 47433949 (-)
LOC110486594 LOC106601485 other upstream 1745628 47460436 ~ 47466735 (-)
LOC110486618 LOC106606909 other upstream 2286378 47999581 ~ 48015951 (-)

Expression


Co-expression Network