LOC110486561 (LOC106601408)


Basic Information

Item Value
gene id LOC110486561
gene name LOC106601408
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45968064 ~ 45977403 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558260.2
GCCACGGACGGATTACAACAAAAAGCTACAGCTCCGTGGTCCTGATATCACTCGCAACACACCACCGCTGCTCCTAAACCaaatgcaacacaacacacacggCGAAATGCAGGCCATTAAGAAGGCAATCTCTTGGAAACTTTTTATACTTTCTTACTTATTCGTGGAGGGTTCGTGCCAAGACTTTGGTGGTGGACAGACTCAATTTATTTGCACGTCGGTGCCCAAAGATATGGACATATGCGCCGCTACCTTGCAAAACAGTATGCCTGGAGAGGATCTGAAGACCACCGTAATGCAGCTCCGGGAGACCGTCCTACAGCAGAAGGAGACCATTATGAACCAAAAAGAGACTATCAGAGAACTGACTTCCAAGTTAACTCGCTGTGAGGGCCAGAGTGCGCCCGAGCCCGGacctgggggaaggagaaaagagacGGGGATCAAAAATACTATGGGGGATGTATCAAGGGGTCCCTCGGACACTTTGGCGCAACTATCGCAGACTTTACAGTCTCTAAAGCAGAGATTAGAAAATCTCGAGCAATTCAGTCGGAACAACAACTCGGTCCAGGCGAACAGTCTGAAAGACCTGCTACAGAGTAAAATCGACGATTTGGAGAAGCAGGTGTTATCCCGCGTGAACAGTATAGAAGATGGCAAGCCTGGGCTGCGGAACGAGACGGAGCAGCGCGGTAGAGTGGAGTCGACTCTCACATCCCTGCACCAGAGAATCACCGACCTCGAGAAAGGTCAGAAAGAAAACAGGCCGCTGGATAAATTCCAGTTGACATTCCCGTTGAGGACCAACTACATGTATGCCAAAGTGAAGAAGAGTCTCCCTGAGATGTACGCATTCACTGTCTGCATGTGGCTCAAATCCAATGCATCCCCAGGGGTGGGCACGCCGTTCTCCTACGCAGTGCCAGGGCAGGCCAACGAGCTGGTGCTGATTGAGTGGGGGAATAATCCTATGGAGATACTCATCAATGACAAGGTAGCTAAATTACCATTCATTATCAACGACGGGAAGTGGCATCACATCTGTGTCACATGGACAACTCGAGATGGAGTATGGGAGGCTTTCCAAGATGGAGTCATGAGGGGCAGTGGAGAAAACCTTGCTCCATACCATCCAATCAAACCACAAGGTGTTCTGATATTGGGACAAGAACAGGATACGCTTGGAGGGGGCTTTGATGCTACACAAGCTTTTGTTGGAGACCTGGCGAATTTTCATATCTGGGACCGGAAGTTGTCTATTGGAGAGATATACAACCTGGCAACTTGCAGCAGCAAAGCGCAGATAGGCAACGTGTTTTCGTGGTTGGAGAGCAGCATTGATATTTACGGAGGAGCCTCCAAGTGGACATTTGAGGCTTGTCGTCAACTGAACTGAACTGCAGGGAAAAGTGAAAAGCCAATGAGAAATGCGTGTGTTAAAGCCTCTGTTGATAATACGTCTGATTTGATAGATAAAGAAGCATTTATTTCAGTAAATGACATCTGGATTTGTTATAGATATTGAGTACTTTGTGTGGACACTTACTAGATTTCTACCTGTCTAAAATAAGACTCTGACCTTCTTGTTCATCTTGGATATTTCAGTTGGATAGTTTTGGCATCTGGTTGGATGCTTCAAAGCGCTTCGTTCAACTGGCCGGTTTGTTATCTCATGGTCTTCAGCGCAATTGACACATACAGGCCAGCATATCACCACAACGCAGTGCAGACGCAGACAGCACTCCCCGACAAAGGACCACTTAGAACGTCCACCATAAGTAGAATTGGTGACCATGTAGTTGTCCCCAACGAGGAAATCAGGGAGGGGACTGGGGATCTGTCTCCGTCCGTTAGTACATTAGTGCGTTTGTACATTAGTCACGCGTGACATCTCAGACAGCACTGGCCCGGTTGTGACAAAACTTGAATGACGCGTCTTGCGTTAGATATCTGGCATTTACACTGATTGGCCAGATGATGGAGCTATAACAAGATATGTTAAATATTTAAAATACAAACTTTGAAAGGTCACACCCATTAATTACCCCGTTTGACCTAAAGTCATGAAATTCGGTGCATATGTCCCTCTGCTAAAAAAGAAACAAATTTGCCTCAGGGACCAATAAGCTTCACCATTCTGGATTTCCGTTATTTAGAATTTTGTGAAAAACACTTAAAACGCTACTCTTCTGGTACCGAATGAACAATCTGCATGAAACTTGATATGTGGCATCCATGACAATATTTTCCAGACTAGTACCTAAAACAACATGGCCACTATTGACCAATAAATATTCACTTGGGCTTGGTCGGGCAAAAATTAGTCAAGGATATTTGTATTGTAACAAACGCTGTCAAGACTCAACATATGACTCAGAGTGATGAGTCTAGCTAACCCACAAGATATCTCAGACACCACTGGCCCGATTTTGGGTGAATAATGCctcttgccatagagatccaaCATTCACAGAATTACACTTATTGGCCCAGGGGGGGATGCTATAGTAATCAACTGTATGTACGTTAGTCACACATGATATCTCAGACACCACTGGCCCGATTTTAacgaaacttgggtgaatgatgtgTCTTGCCATAGAAATCAGTCTTGTGCAAAATTATACTGATTGGCCCAAGGGGGGTGCTGCATCATTTGTGGGTGACGACATGcttactgttgccttgtttttATTGGACTGGGGACACGCATTTCAACCAATTATGTGATTTTGTTCATATTCCCACTGCCTGGGATTTTCACTGTGAACGACGGGTAGACTTGAAAAGGAATGTATACTTAAACGGTTATGAAACAGGCACAGCTTTCTGCTCTATCGCTATCGTTTCTCTATCACCACCTGCTTGACGCAATTTTGTGTAAAGAATCTTTTTTGCCAACATACAAGCCTGGGTGCCTTGGGATGTTGAAATAACTCAGCACATTCATTATGATTTGCAAAGTATTTTGTGTCGTATTTATTTTCCTGTAGGCCTACAACGAGATTTATTTCCAAAAGAGATGTTTATTATCATAACACATTACATTGGATAATAACATGATTATTGTACTTAAAAGCAATTCATTGAGGTGTTTGTACTTTAATGGGAATGTTATCTGTACAGTAACAGCATGACTTAACTAATTGCTGCAGCAGCATCAACACAATCTGCTTTTACTATCCTCCTTTTGGGTTGAGATTTTATACTGTATTGTTATATGCTCAAAGCATGGCAACACTGAAATATGAAAAAGTtctaattttttaaataaaattgtgATACCTGAATCTA

Function

NR:

description
neuronal pentraxin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558260.2 True 3297 mRNA 0.44 5 45968064 45977403

Neighbor

gene id symbol gene type direction distance location
LOC110486556 LOC106601411 coding downstream 220955 45744953 ~ 45747109 (-)
LOC110486554 cygb coding downstream 251411 45710149 ~ 45716653 (-)
LOC110486553 NA coding downstream 258836 45704005 ~ 45709228 (-)
LOC110486551 fbf1 coding downstream 275172 45680858 ~ 45692892 (-)
LOC110486550 LOC106601398 coding downstream 290252 45654898 ~ 45677812 (-)
LOC110486567 LOC106606966 coding upstream 223623 46201026 ~ 46211745 (-)
recql5 LOC106601412 coding upstream 234775 46212178 ~ 46228955 (-)
LOC110486569 LOC106601418 coding upstream 252981 46230384 ~ 46235927 (-)
LOC118938311 LOC106601426 coding upstream 268062 46245465 ~ 46254192 (-)
LOC110486575 LOC106596896 coding upstream 359141 46336544 ~ 46422381 (-)
G1180280 NA non-coding downstream 45898 45912130 ~ 45922166 (-)
G1179843 NA non-coding downstream 61162 45906679 ~ 45906902 (-)
G1179842 NA non-coding downstream 61408 45906373 ~ 45906656 (-)
G1179830 NA non-coding downstream 66750 45901050 ~ 45901314 (-)
G1179779 NA non-coding downstream 138136 45829292 ~ 45829928 (-)
G1180396 LOC106601427 non-coding upstream 197298 46174701 ~ 46176563 (-)
G1180309 LOC106601422 non-coding upstream 202557 46179960 ~ 46183368 (-)
G1180488 LOC106606977 non-coding upstream 292499 46269902 ~ 46272249 (-)
G1180493 NA non-coding upstream 304175 46281578 ~ 46281802 (-)
G1180504 NA non-coding upstream 320625 46298028 ~ 46298267 (-)
G1179621 LOC106607015 other downstream 435402 45531858 ~ 45532662 (-)
G1179619 LOC106601391 other downstream 437950 45529436 ~ 45530114 (-)
zgc:171844 LOC106607059 other downstream 774759 45182660 ~ 45193315 (-)
il-8 il-8 other downstream 880934 45085269 ~ 45087130 (-)
G1178996 NA other downstream 916040 45051576 ~ 45052024 (-)
LOC110486586 ubald2 other upstream 536054 46510585 ~ 46535713 (-)
LOC110486590 LOC105022923 other upstream 906025 46827752 ~ 46915018 (-)
LOC110486593 LOC106606954 other upstream 1455393 47432406 ~ 47433949 (-)
LOC110486594 LOC106601485 other upstream 1484878 47460436 ~ 47466735 (-)
LOC110486618 LOC106606909 other upstream 2025628 47999581 ~ 48015951 (-)

Expression


Co-expression Network