LOC110486563 (LOC106606981)


Basic Information

Item Value
gene id LOC110486563
gene name LOC106606981
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46164994 ~ 46167292 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558262.2
CTCCCACCTGCTCCATCAGACCACCAGCCTGAACAAAGCCAGAGGAAACTGTAGTGACATACAAAAGGACTGGAGAAACAAGACAGGAGGCACGAGGGAGAAATCCAGAGGAAAAAGAGGAAGTTTGGCCAGTGAGAATTGACTTTGGGAAAGTTTTGGTACTCTGCAGAGATAGTAGCCGTGCTACTCTGGTTGGAAACTCAAGGATCAGAAAGAAGTCAAGGAGTATAAGCGTGAaaaggacaaaggaatttgtttCCCCTGACTGGATTGCAAAGTTTTCTTGGATttctcccacccctcctcctgGGCTGAGCGCATAGGGGGAGGAAGAACCGTGTTGACCGCAGGGATGAAGTATAGCTACCAGCTACCAGTGTCATCGTACACCACGCGATATAGTCAGTACACACCAATGacgtacacaccaacacactacacCCCCAGCAATTACACACCTACGCATTACACCCCCAGCAATTACACACCTACGCACTACACCCCCACCAATTACACACCGACGCACTACACCCCCACCAAATACACACCCATTTCATATACCCAAACAAAGTACAGCTCAACTCACTACACCCCCACAAGCTACACCCCATCACtttacacacctacacacaaaaCCAGTTCCAGTTACACCCCTTCCTACAGCAAAGGAACACGCTACAGTGCTGCTGCACGTCGCACAGCACACATACCTGCACAGCAGACTCCTGCACCTCTACCACTCAAGCCAGTCCGGGCTGTACACTTCTCCAATGACATTATCTTCCAGGACCTTGTCCGACATGGTGAGATGGAGCAGATTGGACGCTTTATGAGAGCGAAGAAAGTACGTCTGCATACCCTCTTCCCATCTGGTATGGCAGCACTCCATGAGGCCGTACTCACAGGGAACCTGGATTGCGTGAAGCTGCTGGTGAGATATGGAGCTGATGTCCACCAGAGAGATGAGGACGGCTGGACGCCGCTGCACATGGCCTGCAGTGATGGCTTCCCCGAAATCGCCAGCTACCTGCTCTCTCTTGGTGCCAGTGCATTTGCAGAGAACGAGAACGGGGAGAAGCCAGTGGACCTCATTGACCCAGACTGTAAGGAGCTGGTCAATCTATTTGAGGCAGGCTGTGTGTAACTCACTGGCCACCTACAGAACAGGACCTGAAGGAGCTTGATGTGGACAGATGGATAGTGTACCCTGGTCCTGAGACTAGCTTCTTGGAATGGAAAAGCCCagccagagagaaggagaaagactgGGACAAGGGACCAGGCCACTTTTCCTGCTTCAGAGCACTTATAGACTATTGTTTTCTAAATGCATAATTGTGATTCACAATGCTTTTTGGAGAGGTTTTGTATATCAAGTTGGACAATGCTTTGTAAAGGTTATTATTTTTTGTATCTTTTTCATTCTTTGCTTAAAAGAAGTTGGCTACTTTTTGTTTGGTGCTTTTCCACAAAAACATGCAAACCAGTCTTGTCACTTTAGTTGTCACAAACAGCATCTCAGGCTGTTCATAGCACCAGCAGCTTTCAGTTTCCCAGATCATGTAGCACCACATACCAAAAAATACAGTGTGACACACCACAGTAAACAGTTATTTAATCTGTGTAATGAA

Function

NR:

description
protein phosphatase 1 regulatory subunit 27-like isoform X1

GO: NA

KEGG:

id description
K17566 PPP1R27; protein phosphatase 1 regulatory subunit 27

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558262.2 True 1631 mRNA 0.48 3 46164994 46167292

Neighbor

gene id symbol gene type direction distance location
LOC110486562 peca1 coding upstream 26029 46130578 ~ 46138965 (+)
LOC110486560 LOC106606997 coding upstream 233987 45912255 ~ 45931007 (+)
LOC110486558 LOC106601405 coding upstream 283708 45813132 ~ 45881286 (+)
LOC110486555 LOC106606986 coding upstream 422487 45730467 ~ 45742507 (+)
LOC118938603 NA coding upstream 484598 45680324 ~ 45680396 (+)
LOC118936304 LOC106601427 coding downstream 6619 46173911 ~ 46176562 (+)
LOC100136054 LOC106601422 coding downstream 12620 46179912 ~ 46183380 (+)
LOC110486565 LOC106606967 coding downstream 17114 46184406 ~ 46200116 (+)
LOC110486572 LOC106601412 coding downstream 52587 46219879 ~ 46226688 (+)
LOC110486571 nupl coding downstream 61701 46228993 ~ 46230383 (+)
G1179970 NA non-coding upstream 47397 46117131 ~ 46117597 (+)
G1179953 NA non-coding upstream 79236 46081320 ~ 46085758 (+)
G1179952 NA non-coding upstream 84154 46080285 ~ 46080840 (+)
G1179880 LOC106601408 non-coding upstream 189838 45974212 ~ 45975156 (+)
G1180010 LOC106601417 non-coding downstream 33208 46200500 ~ 46202304 (+)
G1180008 LOC106601418 non-coding downstream 63093 46230385 ~ 46235061 (+)
G1180058 NA non-coding downstream 100238 46267530 ~ 46267925 (+)
G1180070 NA non-coding downstream 129488 46296780 ~ 46297068 (+)
LOC110485192 LOC106601391 other upstream 634866 45529398 ~ 45554103 (+)
G1179362 NA other upstream 702051 45462588 ~ 45462943 (+)
G1179156 NA other upstream 851961 45312330 ~ 45313033 (+)
LOC110486526 smarca4 other upstream 1195275 44967368 ~ 44996127 (+)
LOC110485188 LOC106601310 other upstream 1238677 44878675 ~ 44943951 (+)
G1180047 NA other downstream 71852 46239144 ~ 46273601 (+)
LOC110485193 LOC106601421 other downstream 164426 46302751 ~ 46336386 (+)
G1181472 NA other downstream 1206871 47374163 ~ 47374477 (+)
tmem100a LOC106606948 other downstream 1300824 47468012 ~ 47471205 (+)

Expression


Co-expression Network