LOC118936304 (LOC106601427)


Basic Information

Item Value
gene id LOC118936304
gene name LOC106601427
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46173911 ~ 46176562 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941279.1
TTGACTTCCGTTTTAAATTACTTGCCCAGAAATGATTGGTTGGCCTTGGTAACCGTTTTAGCCGATGGGAGGCCTAGCTCGCTAACGCTAGTTACATCTTGTTGGCTGAATAAAGAAAGCGAAAGGAAGCCGGATCTAAAGACAGCTATCCAACAGAGGATAAAGAAGGTTCAtactctctcaacccccccccaaaaaaaaatcatTAGAAAGGAGCAAGAGACAGACTACACACAGAATGAGCTCATCTGCTCCCAGGATGGTGAACAACTACAAGCGGACTTCCAGCCCTCGGTCTCCTACGAACAGTGGGGAGCTCTTCACTCCAGCGCATGAGGAGAATGTGCGTTTCATCCACGACACCTGGCAGTGTGTGCTCAGAGACATCCGGTCACCTCAGAGCAGCGAACGCAAAGACCGTGGACCACAGGAATATGTGGAAAAGAACCCAAATCCCAACTTAAATTCTTTCACACCAGTTGACCTGAGTGACCTcaagaaacacaacacacaggacTCCAAGAAGTCCTAGTCTTTCTCTTTATAGTCAACAGCTTTTTTTCTGCACCAATTATCCTTGAGaactttctcctcctctgtcagccAGCAAGTCAACCTTTTGGCCATTCCTGCCCAGAATTCCGGTCCTCTTTCTGCCCACCTGGACTAACAGCTTGCCCATTCAACAGCAGTGGGCTGATGTCCTAACAACCACAACATTTTTGGAGTTCCTTATCCaccccagtcccccccccccctctctctttctctgtccaggCTCAATATTTTCGTACCCTACCTCTCATCTGGTTGATGTGGAATGCAAGAAAGCTTGCATTTGATTTCCAGGGATTCTCTCTTCCGGTTCTTGGTTTTACAGCCATGAATTTTTCATTTTCActctttttttttatgtaaatggGACTGATGCAGAGTTTCAATGAAATATGCTGACATCCTGATGCCGAAGTACAGATGGTGTAAAAATTCTTCATGGGACACTTTAAAGGACTGCAGTCTTAAATATTAAGTTTTCTTTTCAATCTACAAAGGATAACGCTGAATGGCTGACATTCTTTTTTTGGAAGATAGTTGAATTGTAGATATATTGGAATGGAAACCGATTGTACGGGCGAGTTTTGGAAGCCAAAAATTATTTAGGATAAATGCCAACATTTTTCATATAAATTCATGCCCCTAAAATGGACTTCAAGTAGACATTGCCACATTGACTTCCCAGccttgaaaaaaaaaatggaataaaaTAATTTTACAGTATTTCACTCTCAATGCATTGGTCATAGATGTTCTGACCTAAATGTACTTTTTGGATGTGTTACCTATATACTCCCCAATGATGTATGTACAAACATCACAGAACCTACAGTAGGATGGTAAATGATTGTTGTCTCATGCTCTTTGTTTTGTTTGTGCATTGTTACTGAAAACAGTGTAATAggctactgaacaaaaatataattgcgacatgcaac
>XM_036941281.1
TTGCCCAGAAATGATTGGTTGGCCTTGGTAACCGTTTTAGCCGATGGGAGGCCTAGCTCGCTAACGCTAGTTACATCTTGTTGGCTGAATAAAGAAAGCGAAAGGAAGCCGGATCTAAAGACAGCTCATCTGCTCCCAGGATGGTGAACAACTACAAGCGGACTTCCAGCCCTCGGTCTCCTACGAACAGTGGGGAGCTCTTCACTCCAGCGCATGAGGAGAATGTGCGTTTCATCCACGACACCTGGCAGTGTGTGCTCAGAGACATCCGGTCACCTCAGAGCAGCGAACGCAAAGACCGTGGACCACAGGAATATGTGGAAAAGAACCCAAATCCCAACTTAAATTCTTTCACACCAGTTGACCTGAGTGACCTcaagaaacacaacacacaggacTCCAAGAAGTCCTAGTCTTTCTCTTTATAGTCAACAGCTTTTTTTCTGCACCAATTATCCTTGAGaactttctcctcctctgtcagccAGCAAGTCAACCTTTTGGCCATTCCTGCCCAGAATTCCGGTCCTCTTTCTGCCCACCTGGACTAACAGCTTGCCCATTCAACAGCAGTGGGCTGATGTCCTAACAACCACAACATTTTTGGAGTTCCTTATCCaccccagtcccccccccccctctctctttctctgtccaggCTCAATATTTTCGTACCCTACCTCTCATCTGGTTGATGTGGAATGCAAGAAAGCTTGCATTTGATTTCCAGGGATTCTCTCTTCCGGTTCTTGGTTTTACAGCCATGAATTTTTCATTTTCActctttttttttatgtaaatggGACTGATGCAGAGTTTCAATGAAATATGCTGACATCCTGATGCCGAAGTACAGATGGTGTAAAAATTCTTCATGGGACACTTTAAAGGACTGCAGTCTTAAATATTAAGTTTTCTTTTCAATCTACAAAGGATAACGCTGAATGGCTGACATTCTTTTTTTGGAAGATAGTTGAATTGTAGATATATTGGAATGGAAACCGATTGTACGGGCGAGTTTTGGAAGCCAAAAATTATTTAGGATAAATGCCAACATTTTTCATATAAATTCATGCCCCTAAAATGGACTTCAAGTAGACATTGCCACATTGACTTCCCAGccttgaaaaaaaaaatggaataaaaTAATTTTACAGTATTTCACTCTCAATGCATTGGTCATAGATGTTCTGACCTAAATGTACTTTTTGGATGTGTTACCTATATACTCCCCAATGATGTATGTACAAACATCACAGAACCTACAGTAGGATGGTAAATGATTGTTGTCTCATGCTCTTTGTTTTGTTTGTGCATTGTTACTGAAAACAGTGTAATAggctactgaacaaaaatataattgcgacatgcaac
>XM_036941280.1
TTACATCTTGGTAATTTTTTGATTATTTCAAGATGGCTATAGCGTTCTAAATTAATATGCCACTGCTGTTGGAAACATTTAATTTGTACTATTGTCTGGATATATTCAGCTAGATAAAGTTAAATGGCTTAGCTAATAATATTAGATGTTGATAACGTGTAGCAAACATTCGCTAGATAGCATATTCGGTACCATAACGTTAGCTTGACAGTTAGCTAACGTTATCCTTTATCTGTCAGCCAGTACTTCAACCGCAAGCTAATTTCTAATCaacaaaaatgtcaatttaaaaTATACGATATTGGGTAACGTTAGTTAGCAAGCTATGTGCTTTATATTTTACGAGTCGCTGGTCAATATGAGTTGGCTAGTATAATTTATTGCTAGCTATTGTTAGCTgtcttagctaacgttagctagctcgctTGTGTAACGTTAAGTGTCAGATTCAAACATGTAAACATTGAAGCATAACTAACATCAACAAGCAAGCTAATGCCGGTAGTGTGGCATCCAATGTAGCTTTCTGGCTGTGTAGTTAAGTAACTGTATTTTGCAGtctgttttagctagctagctttcaaaTGTCAACATTCCACAATTGTTTGTGATTGGTGTCTTTATTTAGAATGAATCATGTCTCGCCTTGTTTCCACCACTAGCTATCCAACAGAGGATAAAGAAGGTTCAtactctctcaacccccccccaaaaaaaaatcatTAGAAAGGAGCAAGAGACAGACTACACACAGAATGAGCTCATCTGCTCCCAGGATGGTGAACAACTACAAGCGGACTTCCAGCCCTCGGTCTCCTACGAACAGTGGGGAGCTCTTCACTCCAGCGCATGAGGAGAATGTGCGTTTCATCCACGACACCTGGCAGTGTGTGCTCAGAGACATCCGGTCACCTCAGAGCAGCGAACGCAAAGACCGTGGACCACAGGAATATGTGGAAAAGAACCCAAATCCCAACTTAAATTCTTTCACACCAGTTGACCTGAGTGACCTcaagaaacacaacacacaggacTCCAAGAAGTCCTAGTCTTTCTCTTTATAGTCAACAGCTTTTTTTCTGCACCAATTATCCTTGAGaactttctcctcctctgtcagccAGCAAGTCAACCTTTTGGCCATTCCTGCCCAGAATTCCGGTCCTCTTTCTGCCCACCTGGACTAACAGCTTGCCCATTCAACAGCAGTGGGCTGATGTCCTAACAACCACAACATTTTTGGAGTTCCTTATCCaccccagtcccccccccccctctctctttctctgtccaggCTCAATATTTTCGTACCCTACCTCTCATCTGGTTGATGTGGAATGCAAGAAAGCTTGCATTTGATTTCCAGGGATTCTCTCTTCCGGTTCTTGGTTTTACAGCCATGAATTTTTCATTTTCActctttttttttatgtaaatggGACTGATGCAGAGTTTCAATGAAATATGCTGACATCCTGATGCCGAAGTACAGATGGTGTAAAAATTCTTCATGGGACACTTTAAAGGACTGCAGTCTTAAATATTAAGTTTTCTTTTCAATCTACAAAGGATAACGCTGAATGGCTGACATTCTTTTTTTGGAAGATAGTTGAATTGTAGATATATTGGAATGGAAACCGATTGTACGGGCGAGTTTTGGAAGCCAAAAATTATTTAGGATAAATGCCAACATTTTTCATATAAATTCATGCCCCTAAAATGGACTTCAAGTAGACATTGCCACATTGACTTCCCAGccttgaaaaaaaaaatggaataaaaTAATTTTACAGTATTTCACTCTCAATGCATTGGTCATAGATGTTCTGACCTAAATGTACTTTTTGGATGTGTTACCTATATACTCCCCAATGATGTATGTACAAACATCACAGAACCTACAGTAGGATGGTAAATGATTGTTGTCTCATGCTCTTTGTTTTGTTTGTGCATTGTTACTGAAAACAGTGTAATAggctactgaacaaaaatataattgcgacatgcaac
>TU1345697
AGCGAAAGGAAGCCGGATCTAAAGACAGCTATCCAACAGAGGATAAAGAAGGTTCAtactctctcaacccccccccaaaaaaaaatcatTAGAAAGGAGCAAGAGACAGACTACACACAGAATGAGCTCATCTGCTCCCAGGATGGTGAACAACTACAAGCGGACTTCCAGCCCTCGGTCTCCTACGAACAGTGGGGAGCTCTTCACTCCAGCGCATGAGGAGAATGTGCGTTTCATCCACGACACCTGGCAGTGTGTGCTCAGAGACATCCGGTCACCTCAGAGCAGCGAACGCAAAGACCGTGGACCACAGGAATATGTGGAAAAGAACCCAAATCCCAACTTAAATTCTTTCACACCAGTTGACCTGAGTGACCTcaagaaacacaacacacaggacTCCAAGAAGTCCTAGTCTTTCTCTTTATAGTCAACAGCTTTTTTTCTGCACCAATTATCCTTGAGaactttctcctcctctgtcagccAGCAAGTCAACCTTTTGGCCATTCCTGCCCAGAATTCCGGTCCTCTTTCTGCCCACCTGGACTAACAGCTTGCCCATTCAACAGCAGTGGGCTGATGTCCTAACAACCACAACATTTTTGGAGTTCCTTATCCaccccagtcccccccccccctctctctttctctgtccaggCTCAATATTTTCGTACCCTACCTCTCATCTGGTTGATGTGGAATGCAAGAAAGCTTGCATTTGATTTCCAGGGATTCTCTCTTCCGGTTCTTGGTTTTACAGCCATGAATTTTTCATTTTCActctttttttttatgtaaatggGACTGATGCAGAGTTTCAATGAAATATGCTGACATCCTGATGCCGAAGTACAGATGGTGTAAAAATTCTTCATGGGACACTTTAAAGGACTGCAGTCTTAAATATTAAGTTTTCTTTTCAATCTACAAAGGATAACGCTGAATGGCTGACATTCTTTTTTTGGAAGATAGTTGAATTGTAGATATATTGGAATGGAAACCGATTGTACGGGCGAGTTTTGGAAGCCAAAAATTATTTAGGATAAATGCCAACATTTTTCATATAAATTCATGCCCCTAAAATGGACTTCAAGTAGACATTGCCACATTGACTTCCCAGccttgaaaaaaaaaatggaataaaaTAATTTTACAGTATTTCACTCTCAATGCATTGGTCATAGATGTTCTGACCTAAATGTACTTTTTGGATGTGTTACCTATATACTCCCCAATGATGTATGTACAAACATCACAGAACCTACAGTAGGATGGTAAATGATTGTTGTCTCATGCTCTTTGTTTTGTTTGTGCATTGTTACTGAAAACAGTGTAATAggctactgaacaaaaatataattgcgacatgcaacaatt
>TU1345699
gttagctagctcgctTGTGTAACGTTAAGTGTCAGATTCAAACATGTAAACATTGAAGCATAACTAACATCAACAAGCAAGCTAATGCCGGTAGTGTGGCATCCAATGTAGCTTTCTGGCTGTGTAGTTAAGTAACTGTATTTTGCAGtctgttttagctagctagctttcaaaTGTCAACATTCCACAATTGTTTGTGATTGGTGTCTTTATTTAGAATGAATCATGTCTCGCCTTGTTTCCACCACTAGCTATCCAACAGAGGATAAAGAAGGTTCAtactctctcaacccccccccaaaaaaaaatcatTAGAAAGGAGCAAGAGACAGACTACACACAGAATGAGCTCATCTGCTCCCAGGATGGTGAACAACTACAAGCGGACTTCCAGCCCTCGGTCTCCTACGAACAGTGGGGAGCTCTTCACTCCAGCGCATGAGGAGAATGTGCGTTTCATCCACGACACCTGGCAGTGTGTGCTCAGAGACATCCGGTCACCTCAGAGCAGCGAACGCAAAGACCGTGGACCACAGGAATATGTGGAAAAGAACCCAAATCCCAACTTAAATTCTTTCACACCAGTTGACCTGAGTGACCTcaagaaacacaacacacaggacTCCAAGAAGTCCTAGTCTTTCTCTTTATAGTCAACAGCTTTTTTTCTGCACCAATTATCCTTGAGaactttctcctcctctgtcagccAGCAAGTCAACCTTTTGGCCATTCCTGCCCAGAATTCCGGTCCTCTTTCTGCCCACCTGGACTAACAGCTTGCCCATTCAACAGCAGTGGGCTGATGTCCTAACAACCACAACATTTTTGGAGTTCCTTATCCaccccagtcccccccccccctctctctttctctgtccaggCTCAATATTTTCGTACCCTACCTCTCATCTGGTTGATGTGGAATGCAAGAAAGCTTGCATTTGATTTCCAGGGATTCTCTCTTCCGGTTCTTGGTTTTACAGCCATGAATTTTTCATTTTCActctttttttttatgtaaatggGACTGATGCAGAGTTTCAATGAAATATGCTGACATCCTGATGCCGAAGTACAGATGGTGTAAAAATTCTTCATGGGACACTTTAAAGGACTGCAGTCTTAAATATTAAGTTTTCTTTTCAATCTACAAAGGATAACGCTGAATGGCTGACATTCTTTTTTTGGAAGATAGTTGAATTGTAGATATATTGGAATGGAAACCGATTGTACGGGCGAGTTTTGGAAGCCAAAAATTATTTAGGATAAATGCCAACATTTTTCATATAAATTCATGCCCCTAAAATGGACTTCAAGTAGACATTGCCACATTGACTTCCCAGccttgaaaaaaaaaatggaataaaaTAATTTTACAGTATTTCACTCTCAATGCATTGGTCATAGATGTTCTGACCTAAATGTACTTTTTGGATGTGTTACCTATATACTCCCCAATGATGTATGTACAAACATCACAGAACCTACAGTAGGATGGTAAATGATTGTTGTCTCATGCTCTTTGTTTTGTTTGTGCATTGTTACTGAAAACAGTGTAATAggctactgaacaaaaatataattgcgacatgcaacaatt

Function

NR:

description
mapk-regulated corepressor-interacting protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941279.1 False 1493 mRNA 0.42 5 46173911 46176558
XM_036941281.1 False 1374 mRNA 0.42 4 46173932 46176558
XM_036941280.1 False 2010 mRNA 0.40 4 46174071 46176558
TU1345697 False 1380 TUCP 0.42 5 46174028 46176562
TU1345699 True 1603 TUCP 0.41 4 46174482 46176562

Neighbor

gene id symbol gene type direction distance location
LOC110486563 LOC106606981 coding upstream 6619 46164994 ~ 46167292 (+)
LOC110486562 peca1 coding upstream 34946 46130578 ~ 46138965 (+)
LOC110486560 LOC106606997 coding upstream 242904 45912255 ~ 45931007 (+)
LOC110486558 LOC106601405 coding upstream 292625 45813132 ~ 45881286 (+)
LOC110486555 LOC106606986 coding upstream 431404 45730467 ~ 45742507 (+)
LOC100136054 LOC106601422 coding downstream 3354 46179912 ~ 46183380 (+)
LOC110486565 LOC106606967 coding downstream 7848 46184406 ~ 46200116 (+)
LOC110486572 LOC106601412 coding downstream 43321 46219879 ~ 46226688 (+)
LOC110486571 nupl coding downstream 52435 46228993 ~ 46230383 (+)
LOC110486573 LOC106601414 coding downstream 80805 46257363 ~ 46272370 (+)
G1179970 NA non-coding upstream 56314 46117131 ~ 46117597 (+)
G1179953 NA non-coding upstream 88153 46081320 ~ 46085758 (+)
G1179952 NA non-coding upstream 93071 46080285 ~ 46080840 (+)
G1179880 LOC106601408 non-coding upstream 198755 45974212 ~ 45975156 (+)
G1180010 LOC106601417 non-coding downstream 23942 46200500 ~ 46202304 (+)
G1180008 LOC106601418 non-coding downstream 53827 46230385 ~ 46235061 (+)
G1180058 NA non-coding downstream 90972 46267530 ~ 46267925 (+)
G1180070 NA non-coding downstream 120222 46296780 ~ 46297068 (+)
LOC110485192 LOC106601391 other upstream 643783 45529398 ~ 45554103 (+)
G1179362 NA other upstream 710968 45462588 ~ 45462943 (+)
G1179156 NA other upstream 860878 45312330 ~ 45313033 (+)
LOC110486526 smarca4 other upstream 1204192 44967368 ~ 44996127 (+)
LOC110485188 LOC106601310 other upstream 1247594 44878675 ~ 44943951 (+)
G1180047 NA other downstream 62586 46239144 ~ 46273601 (+)
LOC110485193 LOC106601421 other downstream 155160 46302751 ~ 46336386 (+)
G1181472 NA other downstream 1197605 47374163 ~ 47374477 (+)
tmem100a LOC106606948 other downstream 1291558 47468012 ~ 47471205 (+)
G1181636 NA other downstream 1372721 47549279 ~ 47549548 (+)

Expression


Co-expression Network