LOC100136054 (LOC106601422)


Basic Information

Item Value
gene id LOC100136054
gene name LOC106601422
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46179912 ~ 46183380 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558267.2
AACGAGGGCTCGTGGCTATAAAGACAGCTTGCGCTCCATTTTAGCGGGTTTTTTTCTCACGCAACTGAGTAGTACCGCCGGGTTATTACCACGTTTTTTATACTTAAGGCAGGGATCAGTCAGGCTAGTTTTTAGTTCGCTAACAGTTCTTAGCGTAATTGAAACTGCATAATGTCTGATAAGATGGATATGTCTCTAGACGACATCATCAAGCAGAACAGGCAGCAGAGAGGGGGCGCAGGAGGCCGTGGTGGTGGAAGAGGCCGTGGCCGGGGAGGCTCTGGCGTGGGCCGAGGTGGTGGTGTTGGCCGTGGAGCAGCTGCTGGAGGCTTTGGGGGCCGAGGTGGAGGATCGGGCCCCATGAGGAACCGACCGAACCTGAGCCGTGGCAGAGCAAGACCTACGCCATACAGCAGGcccaagcagattCCTGATAAATGGCAACACGACATGTACGGCAATCATGGCTTCAATGCCAGTGTTGGGGGTGGCGCTGGTGTGGAAACCGGAGGGAAGCTTCTTGTCTCCAATCTCGACTTCGGCGTTTCAGACGCAGATATTCAGGAGCTCTTTGCGGAGTTTGGTACACTGAAGAAGGCAGCTGTTCACTATGACCGGTCGGGCAGGAGCTTAGGCACTGCAGATGTCCACTTTGAGAGGAAGGCAGATGCTCTAAAAGCTATGAAACAGTACAACGGTGTACCACTTGATGGGCGTCCCATGAACATACAACTTGTCACATCACAGATCGACACACAAAGACGACCACCCATGCAGGGTATGAATCGAGGAGGTGGTGGCATGAACAGGGGTCGTGGTGGTGGGTTTAGAGGGATGCAGAGAGGACGTGGAGCAGGACGTGGAGGAGGCAGGGGCCGAGGTGGCCGCGGGGGAAGCACTAAGCCACTTTCCGCTGAAGAGCTGGATGCCCAGTTAGATGCCTACAATGCCAGGATGGAAACAAGCTAAGAGCCTAGGTGAATCCTCCAGGCTGCATTACTCTCCAGGCTGAACATGAGGACAGTCGCTGTTGTTACAGCGTTGAAGATGCAGGACATTTTACACTTAAATGTCTTCTGGTGTGATTTAAATTTGTATCAATCCTTTTAAATTctccaatgtgttttttttttaccaatttttgttttttggaaaaaaaatATTGGTTTTGACTGTAGGTTTAAGGGGGTGAGTGGGGCTTTCCTTGCTGCTCTGATTCCTTTCCCCGTAGATCATTGTAATAAACCCTGCAGTACAAATTAA

Function

NR:

description
THO complex subunit 4 isoform X1

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
K12881 THOC4, ALY; THO complex subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558267.2 True 1263 mRNA 0.51 6 46179912 46183380
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118936304 LOC106601427 coding upstream 3354 46173911 ~ 46176562 (+)
LOC110486563 LOC106606981 coding upstream 12620 46164994 ~ 46167292 (+)
LOC110486562 peca1 coding upstream 40947 46130578 ~ 46138965 (+)
LOC110486560 LOC106606997 coding upstream 248905 45912255 ~ 45931007 (+)
LOC110486558 LOC106601405 coding upstream 298626 45813132 ~ 45881286 (+)
LOC110486565 LOC106606967 coding downstream 1026 46184406 ~ 46200116 (+)
LOC110486572 LOC106601412 coding downstream 36499 46219879 ~ 46226688 (+)
LOC110486571 nupl coding downstream 45613 46228993 ~ 46230383 (+)
LOC110486573 LOC106601414 coding downstream 73983 46257363 ~ 46272370 (+)
LOC110486574 LOC106606976 coding downstream 90944 46274324 ~ 46294468 (+)
G1179970 NA non-coding upstream 62315 46117131 ~ 46117597 (+)
G1179953 NA non-coding upstream 94154 46081320 ~ 46085758 (+)
G1179952 NA non-coding upstream 99072 46080285 ~ 46080840 (+)
G1179880 LOC106601408 non-coding upstream 204756 45974212 ~ 45975156 (+)
G1180010 LOC106601417 non-coding downstream 17120 46200500 ~ 46202304 (+)
G1180008 LOC106601418 non-coding downstream 47005 46230385 ~ 46235061 (+)
G1180058 NA non-coding downstream 84150 46267530 ~ 46267925 (+)
G1180070 NA non-coding downstream 113400 46296780 ~ 46297068 (+)
LOC110485192 LOC106601391 other upstream 649784 45529398 ~ 45554103 (+)
G1179362 NA other upstream 716969 45462588 ~ 45462943 (+)
G1179156 NA other upstream 866879 45312330 ~ 45313033 (+)
LOC110486526 smarca4 other upstream 1210193 44967368 ~ 44996127 (+)
G1180047 NA other downstream 55764 46239144 ~ 46273601 (+)
LOC110485193 LOC106601421 other downstream 148338 46302751 ~ 46336386 (+)
G1181472 NA other downstream 1190783 47374163 ~ 47374477 (+)
tmem100a LOC106606948 other downstream 1284736 47468012 ~ 47471205 (+)
G1181636 NA other downstream 1365899 47549279 ~ 47549548 (+)

Expression

LOC100136054(LOC106601422) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 80.
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LOC100136054(LOC106601422) Expression in each Bioproject

Bar chart with 20 bars.
LOC100136054(LOC106601422) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3000.
End of interactive chart.

Co-expression Network