LOC110486565 (LOC106606967)


Basic Information

Item Value
gene id LOC110486565
gene name LOC106606967
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46184406 ~ 46200116 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558273.2
AGGCTTGTTGTTGAGCGCCCGCCTACATTCGGACAGCCTTTGTAGTGCGAGTCAATATTCCCGGAAGCGTGCTGTGCGTTTGATTTGAGCTGCTCCCTCCTCGCCATTCAGTGGCGCGTACTCCAGTGTCGCTGCAGCATTACGtagACTATGGCAGAGCAGGATCCCACCCCGGAGCAGCTGGCGGCCATCGCAGCGGCCAACGAGGAAGCGGAGGGCGGGGTCAACTACAAGCCCCCCGCTCAGAAGAGTCTGCAGGAGATCCAGGAGCTGGACAAGGACGACGAGAGCCTGCGCAAGTACAAGGAGGCCCTGCTGGGGAACGCCGCCGCGGCTACAGACCCCAACGCTCCCAATGTCCAGGTGACACGCTTGACCCTGATGTGTGACACGGCGCCGCTGCCCCTGACCCTTGACCTACAGGGAGATCTGGAGTCCTTTAAGAAACAGTCCTTTGTCCTGAAGGAAGGCGTGGAGTACAAGATAAAGATCAGCTTCAAGGTCAACAAGGAGATTGTGTCGGGACTGAAGTATGCCCAGCAGACCTACAGGAAAGGAGTCAAGGttgACAAGTCAGACTACATGGTGGGGAGCTACGGGCCACGGCCGGCAGAGTATGAGTTCCTGACCCCTCTGGAGGAGGCCCCTAAAGGCATGCTGGCCCGCGGCACCTACAACATCAAGTCCAAGTTCACTGATGACGATAAGCACGACCACCTCTCCTGGGAGTGGAACCTTAACATCAAGAAAGAGTGGAAAGACTGAGGCCCCGTCAACTTAATTCTTCCCCCTCTTCTTATTCCCCCTCCATTATTTTGCATTCATAATTATGTGATAAGTAATTAAGGCAAATTGCTCTCTCGTCCACCCCAATCCCTGCAGTAGTTTCATTCCAGTCACGTTGTCAtgccattcacccccccccccacacacacacacactccttgtgATGCTGAGTATTGAATATGTGGAGAAAGCAAATCATGTGCACAATCATGAATTTGTTTTGGTTAGTTTGtatataaccttttttttttatatgaaaaAAATGAAAGATTGATTTGTTAATGCTCTTGATATGGATGTCAATCAACTGTGTGAATTCCATCCTTTCCCCTTCATCCCCTCTTTACCCCCCTTCCTGCTGATTGTTTTATACAACCATGATCTGCCTTGTAAAGGTGTTGCTGTGGTAGGTCCACACTCTGTACTCTTTGTTGGGGACGTTGCTCTCTGTCAGTGGAAAGCCTTTGAGTAGATTATATGTACCAGAGTCCACACAATTAGTTTATTCTGGAACTAGTGTGAATTCCTAACCGTTAAGAGGTGCCATGAACAGCACTTACCGGCAGTCACCAGAGGCACTGTGACCACCTGCTGAAGGTGCAAGTGTGCCTCTTCCTGGTCAGGGTTTTCACCTCCCTACCTAGTTCATTCAGCAGCCATGTGGCCTTAAAGAGGATTCCTGTAGAACTAACGATGAAGGAAATGATCACAAAGAGCCATTTGCCTTTAGAACAGAACTGTCAGATTGTTACGAGAGCCTCCTACGGGGTTTGAGTAAAAGAGTTTTAGGCTGAGTGCAGGTGCGAACAGATGATCAGACAGACCATTGAGATGCTTGTACCTTCTTTCCAGAATTAGCCAGTAGAAGTAGACCATGAAAGAGAACAGCAGACATCTCTGCTCCCttccctcctcaccacatccagtGGTCTCAATGTGGACCACCTTTAGTGCTGTTTGCTGATGTGAATGTGTTTACGTTGATATAAAGAACCTGGTTTTGTTGACAACTAAGAAATGAGCTCCTTGTCAAATGCCCTCTAAGCAGACCTTGAGGCCTTCTTCCAGTCACTAACTCCATTACTCTAGCGTCTCATATGGGGCCTTGCTGGTGGCCCTTGTGAGCAGAGAGGAATGTCACACAAGGGTTGTTAATCTGCTCACCTCGAGTATGAATCAACTTTAGGATTACCAAAACTGGCTGTGCCTCTAGCCTTTACAACCACCAGCTGCTCTCTGCTAAGGTCAGACATTCAGAATGGGAACTCAACAAATAGTTTTGAACTTTGGGCCTGATGTTTTAGGTCAGGTCTAAGTTGTGCACAGACCCAGAGTTAAGTAGAACGAGAACAGCCAAGACCTCTTAATACAAAACCGTGTTATATTTTTCTACACTCCATTAATCAATGTCATAACTTGTGATGTAGGGCTCAGGCTGTTTGGTTTCAATGGTTCAGTATGCTTCACTGGATCATTATTCAGTATTGTTTTGATTCTGTGTGCCACCTGGAGAACACTGTTCACCTGTCACATTAAAGTCTTCAGACTGGA
>XM_036941282.1
AGGCTTGTTGTTGAGCGCCCGCCTACATTCGGACAGCCTTTGTAGTGCGAGTCAATATTCCCGGAAGCGTGCTGTGCGTTTGATTTGAGCTGCTCCCTCCTCGCCATTCAGTGGCGCGTACTCCAGTGTCGCTGCAGCATTACGtagACTATGGCAGAGCAGGATCCCACCCCGGAGCAGCTGGCGGCCATCGCAGCGGCCAACGAGGAAGCGGAGGGCGGGGTCAACTACAAGCCCCCCGCTCAGAAGAGTCTGCAGGAGATCCAGGAGCTGGACAAGGACGACGAGAGCCTGCGCAAGTACAAGGAGGCCCTGCTGGGGAACGCCGCCGCGGCTACAGTAGACCCCAACGCTCCCAATGTCCAGGTGACACGCTTGACCCTGATGTGTGACACGGCGCCGCTGCCCCTGACCCTTGACCTACAGGGAGATCTGGAGTCCTTTAAGAAACAGTCCTTTGTCCTGAAGGAAGGCGTGGAGTACAAGATAAAGATCAGCTTCAAGGTCAACAAGGAGATTGTGTCGGGACTGAAGTATGCCCAGCAGACCTACAGGAAAGGAGTCAAGGttgACAAGTCAGACTACATGGTGGGGAGCTACGGGCCACGGCCGGCAGAGTATGAGTTCCTGACCCCTCTGGAGGAGGCCCCTAAAGGCATGCTGGCCCGCGGCACCTACAACATCAAGTCCAAGTTCACTGATGACGATAAGCACGACCACCTCTCCTGGGAGTGGAACCTTAACATCAAGAAAGAGTGGAAAGACTGAGGCCCCGTCAACTTAATTCTTCCCCCTCTTCTTATTCCCCCTCCATTATTTTGCATTCATAATTATGTGATAAGTAATTAAGGCAAATTGCTCTCTCGTCCACCCCAATCCCTGCAGTAGTTTCATTCCAGTCACGTTGTCAtgccattcacccccccccccacacacacacacactccttgtgATGCTGAGTATTGAATATGTGGAGAAAGCAAATCATGTGCACAATCATGAATTTGTTTTGGTTAGTTTGtatataaccttttttttttatatgaaaaAAATGAAAGATTGATTTGTTAATGCTCTTGATATGGATGTCAATCAACTGTGTGAATTCCATCCTTTCCCCTTCATCCCCTCTTTACCCCCCTTCCTGCTGATTGTTTTATACAACCATGATCTGCCTTGTAAAGGTGTTGCTGTGGTAGGTCCACACTCTGTACTCTTTGTTGGGGACGTTGCTCTCTGTCAGTGGAAAGCCTTTGAGTAGATTATATGTACCAGAGTCCACACAATTAGTTTATTCTGGAACTAGTGTGAATTCCTAACCGTTAAGAGGTGCCATGAACAGCACTTACCGGCAGTCACCAGAGGCACTGTGACCACCTGCTGAAGGTGCAAGTGTGCCTCTTCCTGGTCAGGGTTTTCACCTCCCTACCTAGTTCATTCAGCAGCCATGTGGCCTTAAAGAGGATTCCTGTAGAACTAACGATGAAGGAAATGATCACAAAGAGCCATTTGCCTTTAGAACAGAACTGTCAGATTGTTACGAGAGCCTCCTACGGGGTTTGAGTAAAAGAGTTTTAGGCTGAGTGCAGGTGCGAACAGATGATCAGACAGACCATTGAGATGCTTGTACCTTCTTTCCAGAATTAGCCAGTAGAAGTAGACCATGAAAGAGAACAGCAGACATCTCTGCTCCCttccctcctcaccacatccagtGGTCTCAATGTGGACCACCTTTAGTGCTGTTTGCTGATGTGAATGTGTTTACGTTGATATAAAGAACCTGGTTTTGTTGACAACTAAGAAATGAGCTCCTTGTCAAATGCCCTCTAAGCAGACCTTGAGGCCTTCTTCCAGTCACTAACTCCATTACTCTAGCGTCTCATATGGGGCCTTGCTGGTGGCCCTTGTGAGCAGAGAGGAATGTCACACAAGGGTTGTTAATCTGCTCACCTCGAGTATGAATCAACTTTAGGATTACCAAAACTGGCTGTGCCTCTAGCCTTTACAACCACCAGCTGCTCTCTGCTAAGGTCAGACATTCAGAATGGGAACTCAACAAATAGTTTTGAACTTTGGGCCTGATGTTTTAGGTCAGGTCTAAGTTGTGCACAGACCCAGAGTTAAGTAGAACGAGAACAGCCAAGACCTCTTAATACAAAACCGTGTTATATTTTTCTACACTCCATTAATCAATGTCATAACTTGTGATGTAGGGCTCAGGCTGTTTGGTTTCAATGGTTCAGTATGCTTCACTGGATCATTATTCAGTATTGTTTTGATTCTGTGTGCCACCTGGAGAACACTGTTCACCTGTCACATTAAAGTCTTCAGACTGGA
>XM_021558272.2
TTGTTGTTGAGCGCCCGCCTACATTCGGACAGCCTTTGTAGTGCGAGTCAATATTCCCGGAAGCGTGCTGTGCGTTTGATTTGAGCTGCTCCCTCCTCGCCATTCAGTGGCGCGTACTCCAGTGTCGCTGCAGCATTACGACTATGGCAGAGCAGGATCCCACCCCGGAGCAGCTGGCGGCCATCGCAGCGGCCAACGAGGAAGCGGAGGGCGGGGTCAACTACAAGCCCCCCGCTCAGAAGAGTCTGCAGGAGATCCAGGAGCTGGACAAGGACGACGAGAGCCTGCGCAAGTACAAGGAGGCCCTGCTGGGGAACGCCGCCGCGGCTACAGTAGACCCCAACGCTCCCAATGTCCAGGTGACACGCTTGACCCTGATGTGTGACACGGCGCCGCTGCCCCTGACCCTTGACCTACAGGGAGATCTGGAGTCCTTTAAGAAACAGTCCTTTGTCCTGAAGGAAGGCGTGGAGTACAAGATAAAGATCAGCTTCAAGGTCAACAAGGAGATTGTGTCGGGACTGAAGTATGCCCAGCAGACCTACAGGAAAGGAGTCAAGGttgACAAGTCAGACTACATGGTGGGGAGCTACGGGCCACGGCCGGCAGAGTATGAGTTCCTGACCCCTCTGGAGGAGGCCCCTAAAGGCATGCTGGCCCGCGGCACCTACAACATCAAGTCCAAGTTCACTGATGACGATAAGCACGACCACCTCTCCTGGGAGTGGAACCTTAACATCAAGAAAGAGTGGAAAGACTGAGGCCCCGTCAACTTAATTCTTCCCCCTCTTCTTATTCCCCCTCCATTATTTTGCATTCATAATTATGTGATAAGTAATTAAGGCAAATTGCTCTCTCGTCCACCCCAATCCCTGCAGTAGTTTCATTCCAGTCACGTTGTCAtgccattcacccccccccccacacacacacacactccttgtgATGCTGAGTATTGAATATGTGGAGAAAGCAAATCATGTGCACAATCATGAATTTGTTTTGGTTAGTTTGtatataaccttttttttttatatgaaaaAAATGAAAGATTGATTTGTTAATGCTCTTGATATGGATGTCAATCAACTGTGTGAATTCCATCCTTTCCCCTTCATCCCCTCTTTACCCCCCTTCCTGCTGATTGTTTTATACAACCATGATCTGCCTTGTAAAGGTGTTGCTGTGGTAGGTCCACACTCTGTACTCTTTGTTGGGGACGTTGCTCTCTGTCAGTGGAAAGCCTTTGAGTAGATTATATGTACCAGAGTCCACACAATTAGTTTATTCTGGAACTAGTGTGAATTCCTAACCGTTAAGAGGTGCCATGAACAGCACTTACCGGCAGTCACCAGAGGCACTGTGACCACCTGCTGAAGGTGCAAGTGTGCCTCTTCCTGGTCAGGGTTTTCACCTCCCTACCTAGTTCATTCAGCAGCCATGTGGCCTTAAAGAGGATTCCTGTAGAACTAACGATGAAGGAAATGATCACAAAGAGCCATTTGCCTTTAGAACAGAACTGTCAGATTGTTACGAGAGCCTCCTACGGGGTTTGAGTAAAAGAGTTTTAGGCTGAGTGCAGGTGCGAACAGATGATCAGACAGACCATTGAGATGCTTGTACCTTCTTTCCAGAATTAGCCAGTAGAAGTAGACCATGAAAGAGAACAGCAGACATCTCTGCTCCCttccctcctcaccacatccagtGGTCTCAATGTGGACCACCTTTAGTGCTGTTTGCTGATGTGAATGTGTTTACGTTGATATAAAGAACCTGGTTTTGTTGACAACTAAGAAATGAGCTCCTTGTCAAATGCCCTCTAAGCAGACCTTGAGGCCTTCTTCCAGTCACTAACTCCATTACTCTAGCGTCTCATATGGGGCCTTGCTGGTGGCCCTTGTGAGCAGAGAGGAATGTCACACAAGGGTTGTTAATCTGCTCACCTCGAGTATGAATCAACTTTAGGATTACCAAAACTGGCTGTGCCTCTAGCCTTTACAACCACCAGCTGCTCTCTGCTAAGGTCAGACATTCAGAATGGGAACTCAACAAATAGTTTTGAACTTTGGGCCTGATGTTTTAGGTCAGGTCTAAGTTGTGCACAGACCCAGAGTTAAGTAGAACGAGAACAGCCAAGACCTCTTAATACAAAACCGTGTTATATTTTTCTACACTCCATTAATCAATGTCATAACTTGTGATGTAGGGCTCAGGCTGTTTGGTTTCAATGGTTCAGTATGCTTCACTGGATCATTATTCAGTATTGTTTTGATTCTGTGTGCCACCTGGAGAACACTGTTCACCTGTCACATTAAAGTCTTCAGACTGGA
>XM_021558274.2
TTGTTGTTGAGCGCCCGCCTACATTCGGACAGCCTTTGTAGTGCGAGTCAATATTCCCGGAAGCGTGCTGTGCGTTTGATTTGAGCTGCTCCCTCCTCGCCATTCAGTGGCGCGTACTCCAGTGTCGCTGCAGCATTACGACTATGGCAGAGCAGGATCCCACCCCGGAGCAGCTGGCGGCCATCGCAGCGGCCAACGAGGAAGCGGAGGGCGGGGTCAACTACAAGCCCCCCGCTCAGAAGAGTCTGCAGGAGATCCAGGAGCTGGACAAGGACGACGAGAGCCTGCGCAAGTACAAGGAGGCCCTGCTGGGGAACGCCGCCGCGGCTACAGACCCCAACGCTCCCAATGTCCAGGTGACACGCTTGACCCTGATGTGTGACACGGCGCCGCTGCCCCTGACCCTTGACCTACAGGGAGATCTGGAGTCCTTTAAGAAACAGTCCTTTGTCCTGAAGGAAGGCGTGGAGTACAAGATAAAGATCAGCTTCAAGGTCAACAAGGAGATTGTGTCGGGACTGAAGTATGCCCAGCAGACCTACAGGAAAGGAGTCAAGGttgACAAGTCAGACTACATGGTGGGGAGCTACGGGCCACGGCCGGCAGAGTATGAGTTCCTGACCCCTCTGGAGGAGGCCCCTAAAGGCATGCTGGCCCGCGGCACCTACAACATCAAGTCCAAGTTCACTGATGACGATAAGCACGACCACCTCTCCTGGGAGTGGAACCTTAACATCAAGAAAGAGTGGAAAGACTGAGGCCCCGTCAACTTAATTCTTCCCCCTCTTCTTATTCCCCCTCCATTATTTTGCATTCATAATTATGTGATAAGTAATTAAGGCAAATTGCTCTCTCGTCCACCCCAATCCCTGCAGTAGTTTCATTCCAGTCACGTTGTCAtgccattcacccccccccccacacacacacacactccttgtgATGCTGAGTATTGAATATGTGGAGAAAGCAAATCATGTGCACAATCATGAATTTGTTTTGGTTAGTTTGtatataaccttttttttttatatgaaaaAAATGAAAGATTGATTTGTTAATGCTCTTGATATGGATGTCAATCAACTGTGTGAATTCCATCCTTTCCCCTTCATCCCCTCTTTACCCCCCTTCCTGCTGATTGTTTTATACAACCATGATCTGCCTTGTAAAGGTGTTGCTGTGGTAGGTCCACACTCTGTACTCTTTGTTGGGGACGTTGCTCTCTGTCAGTGGAAAGCCTTTGAGTAGATTATATGTACCAGAGTCCACACAATTAGTTTATTCTGGAACTAGTGTGAATTCCTAACCGTTAAGAGGTGCCATGAACAGCACTTACCGGCAGTCACCAGAGGCACTGTGACCACCTGCTGAAGGTGCAAGTGTGCCTCTTCCTGGTCAGGGTTTTCACCTCCCTACCTAGTTCATTCAGCAGCCATGTGGCCTTAAAGAGGATTCCTGTAGAACTAACGATGAAGGAAATGATCACAAAGAGCCATTTGCCTTTAGAACAGAACTGTCAGATTGTTACGAGAGCCTCCTACGGGGTTTGAGTAAAAGAGTTTTAGGCTGAGTGCAGGTGCGAACAGATGATCAGACAGACCATTGAGATGCTTGTACCTTCTTTCCAGAATTAGCCAGTAGAAGTAGACCATGAAAGAGAACAGCAGACATCTCTGCTCCCttccctcctcaccacatccagtGGTCTCAATGTGGACCACCTTTAGTGCTGTTTGCTGATGTGAATGTGTTTACGTTGATATAAAGAACCTGGTTTTGTTGACAACTAAGAAATGAGCTCCTTGTCAAATGCCCTCTAAGCAGACCTTGAGGCCTTCTTCCAGTCACTAACTCCATTACTCTAGCGTCTCATATGGGGCCTTGCTGGTGGCCCTTGTGAGCAGAGAGGAATGTCACACAAGGGTTGTTAATCTGCTCACCTCGAGTATGAATCAACTTTAGGATTACCAAAACTGGCTGTGCCTCTAGCCTTTACAACCACCAGCTGCTCTCTGCTAAGGTCAGACATTCAGAATGGGAACTCAACAAATAGTTTTGAACTTTGGGCCTGATGTTTTAGGTCAGGTCTAAGTTGTGCACAGACCCAGAGTTAAGTAGAACGAGAACAGCCAAGACCTCTTAATACAAAACCGTGTTATATTTTTCTACACTCCATTAATCAATGTCATAACTTGTGATGTAGGGCTCAGGCTGTTTGGTTTCAATGGTTCAGTATGCTTCACTGGATCATTATTCAGTATTGTTTTGATTCTGTGTGCCACCTGGAGAACACTGTTCACCTGTCACATTAAAGTCTTCAGACTGGA

Function

NR:

description
rho GDP-dissociation inhibitor 1-like isoform X2

GO: NA

KEGG:

id description
K12462 ARHGDI, RHOGDI; Rho GDP-dissociation inhibitor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558273.2 False 2337 mRNA 0.48 6 46184406 46200116
XM_036941282.1 False 2340 mRNA 0.48 6 46184406 46200116
XM_021558272.2 False 2333 mRNA 0.48 6 46184410 46200116
XM_021558274.2 True 2330 mRNA 0.48 6 46184410 46200116

Neighbor

gene id symbol gene type direction distance location
LOC100136054 LOC106601422 coding upstream 1026 46179912 ~ 46183380 (+)
LOC118936304 LOC106601427 coding upstream 7848 46173911 ~ 46176562 (+)
LOC110486563 LOC106606981 coding upstream 17114 46164994 ~ 46167292 (+)
LOC110486562 peca1 coding upstream 45441 46130578 ~ 46138965 (+)
LOC110486560 LOC106606997 coding upstream 253399 45912255 ~ 45931007 (+)
LOC110486572 LOC106601412 coding downstream 19763 46219879 ~ 46226688 (+)
LOC110486571 nupl coding downstream 28877 46228993 ~ 46230383 (+)
LOC110486573 LOC106601414 coding downstream 57247 46257363 ~ 46272370 (+)
LOC110486574 LOC106606976 coding downstream 74208 46274324 ~ 46294468 (+)
LOC110485193 LOC106601421 coding downstream 102635 46302751 ~ 46336386 (+)
G1179970 NA non-coding upstream 66809 46117131 ~ 46117597 (+)
G1179953 NA non-coding upstream 98648 46081320 ~ 46085758 (+)
G1179952 NA non-coding upstream 103566 46080285 ~ 46080840 (+)
G1179880 LOC106601408 non-coding upstream 209250 45974212 ~ 45975156 (+)
G1180010 LOC106601417 non-coding downstream 384 46200500 ~ 46202304 (+)
G1180008 LOC106601418 non-coding downstream 30269 46230385 ~ 46235061 (+)
G1180058 NA non-coding downstream 67414 46267530 ~ 46267925 (+)
G1180070 NA non-coding downstream 96664 46296780 ~ 46297068 (+)
LOC110485192 LOC106601391 other upstream 654278 45529398 ~ 45554103 (+)
G1179362 NA other upstream 721463 45462588 ~ 45462943 (+)
G1179156 NA other upstream 871373 45312330 ~ 45313033 (+)
LOC110486526 smarca4 other upstream 1214687 44967368 ~ 44996127 (+)
G1180047 NA other downstream 39028 46239144 ~ 46273601 (+)
G1181472 NA other downstream 1174047 47374163 ~ 47374477 (+)
tmem100a LOC106606948 other downstream 1268000 47468012 ~ 47471205 (+)
G1181636 NA other downstream 1349163 47549279 ~ 47549548 (+)

Expression


Co-expression Network