LOC110486569 (LOC106601418)


Basic Information

Item Value
gene id LOC110486569
gene name LOC106601418
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46230384 ~ 46235927 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558277.2
TGCCTTCGGATTGAGAAAACGGAGAGAGCCGAACCATCTTCGTTCCTAGGAAAATCTTGTATGTAAACAAGGTCAGTCATACTGCAGCATACAGTCAACTTGTTCTCTAATAGAATTACTCCTGTGTATAGAAGACACCAATCGGCTTACATTACAACATTGTGACAGAGTCTCAGCACAGTTTCCAAGATGATGCAGTGTTTCCACTTTATAGTCGAGCCGGTCAAGAACATCACAGCCAAGCTTAAGGAAACTCGCACGAGGGCGAAGAATGATAAGAGAGAGCCACTGGAAGAGAATCAGCTGTTTATAGTGGAGCTGGCTAGAGATCTCAATCGAGTGTGCCAGAGGTCTGAGGTGCTGGAGAACATCTGGAAACTAGAGGACATCTggcccactcctctttgcagggCCTTCATCCTGGAGTGGGCGTCTCTGCTGGAGAGCAAGCAGAAGAGGCCCATGCAGTCGGATGGTTGGCCAGAGGAGAGCGAGTGGAGGAAGCAAGACCTGTTCAGTGAGAATGAAATGGAGAACGCTAAGAGGACAATCATCAACTGGACCAAGGACCTGAGAGCCCAACCTGAGCAAAGTGTGTGGCCTGGGGAGGCTGTGGCTCAAGTTCTGGAGGACCTCCAGGCTGCATGGAGGAGTCGCCACATGCCCAACCTCTTGACAGCCATGGAACTGCTCATGTGGGTCTTACTGACACAGGGCCTGGACAAGGAAGCCATCCCTCAACAGTGGCTCATATGGAAGCAGAGGACTCAGAAGATAGGTGCTGCCCGCTACATTCCTCACTCAGTATGGGACTGGATCTCTAATGCAGCAGTGGAGATTTCCCTTGACCTGGACACGGCCAACCCTGACCTGCTGATCTCCAATGACGAGAAGAAGATGCGCTGCGGCTTCGAGAGAAAGGATGTGCCAAACTACCACCAGCGCTTCGATGGCTGGTGGTGCGCCACAGGGGTGGAGGGTTTCAACTCTGGCCGCCACTACTGGGAGGTGGAGGTTGGGGAGCGGGACTTTCGGCTGGGTGTGGCCAAGGAGTCAGCCCTGAGGAAGGGCTTCAAGTCCCTGAACACAGACACGGGCTACCTGACCCTGCGCCTGGAGAGGGGCACGGAGCTCAAGGCCCTGACTGTGCCCTTCACTGCCCTGCCGCCTGGTCTTATCCCCCGCAAGGTGGCCGTCTACCTGGACTACGACCAGGGCCAGCTGTCCTTCTACGACGTAGACAGCCGCTCCCACATCTACACCTACAATGAGAGCTTCAACGAGAAGCTGTTCCCTCTGTTCGGCACGACAGAGATCATTAAGGACCTGGTGATCAAGTCCCCTGGGAGCAAGGCCTATtgcctctgtccctccctgtgcCTGTGGGGCTGAACTTTCCCTCTTAACACCATCCCTCTACCCTATGGTTACCCTCTCACCACTCCTATAGAGTAATCAGAACCTTCGTTACTGTAAAGAACTAGACCATCATGATATTGGATAGCTATGTGACCACTGATGCTGCTGCTTCTATGTGATTCTTTCTGCCTCTTCCTTACTCCAGTTATGCTATGCACTCACATGCTCTGTATTTTCATACATTTGAAAGAATACCATAGTATTATCTTAATCTATTGTGAAATATTAATCCTGCAATAACAATGCACTTTCCGTGATGAATAAATATACGAAACTCAAAGGTTC
>XM_021558278.2
CCCGCCGTTCCACTTTGTGGACAACTGATGTACCACAACAATCATGGCGGCGCTGTTTGTCTGCCTTCGGATTGAGAAAACGGAGAGAGCCGAACCATCTTCGTTCCTAGGAAAATCTTGTATGTAAACAAGAGTCTCAGCACAGTTTCCAAGATGATGCAGTGTTTCCACTTTATAGTCGAGCCGGTCAAGAACATCACAGCCAAGCTTAAGGAAACTCGCACGAGGGCGAAGAATGATAAGAGAGAGCCACTGGAAGAGAATCAGCTGTTTATAGTGGAGCTGGCTAGAGATCTCAATCGAGTGTGCCAGAGGTCTGAGGTGCTGGAGAACATCTGGAAACTAGAGGACATCTggcccactcctctttgcagggCCTTCATCCTGGAGTGGGCGTCTCTGCTGGAGAGCAAGCAGAAGAGGCCCATGCAGTCGGATGGTTGGCCAGAGGAGAGCGAGTGGAGGAAGCAAGACCTGTTCAGTGAGAATGAAATGGAGAACGCTAAGAGGACAATCATCAACTGGACCAAGGACCTGAGAGCCCAACCTGAGCAAAGTGTGTGGCCTGGGGAGGCTGTGGCTCAAGTTCTGGAGGACCTCCAGGCTGCATGGAGGAGTCGCCACATGCCCAACCTCTTGACAGCCATGGAACTGCTCATGTGGGTCTTACTGACACAGGGCCTGGACAAGGAAGCCATCCCTCAACAGTGGCTCATATGGAAGCAGAGGACTCAGAAGATAGGTGCTGCCCGCTACATTCCTCACTCAGTATGGGACTGGATCTCTAATGCAGCAGTGGAGATTTCCCTTGACCTGGACACGGCCAACCCTGACCTGCTGATCTCCAATGACGAGAAGAAGATGCGCTGCGGCTTCGAGAGAAAGGATGTGCCAAACTACCACCAGCGCTTCGATGGCTGGTGGTGCGCCACAGGGGTGGAGGGTTTCAACTCTGGCCGCCACTACTGGGAGGTGGAGGTTGGGGAGCGGGACTTTCGGCTGGGTGTGGCCAAGGAGTCAGCCCTGAGGAAGGGCTTCAAGTCCCTGAACACAGACACGGGCTACCTGACCCTGCGCCTGGAGAGGGGCACGGAGCTCAAGGCCCTGACTGTGCCCTTCACTGCCCTGCCGCCTGGTCTTATCCCCCGCAAGGTGGCCGTCTACCTGGACTACGACCAGGGCCAGCTGTCCTTCTACGACGTAGACAGCCGCTCCCACATCTACACCTACAATGAGAGCTTCAACGAGAAGCTGTTCCCTCTGTTCGGCACGACAGAGATCATTAAGGACCTGGTGATCAAGTCCCCTGGGAGCAAGGCCTATtgcctctgtccctccctgtgcCTGTGGGGCTGAACTTTCCCTCTTAACACCATCCCTCTACCCTATGGTTACCCTCTCACCACTCCTATAGAGTAATCAGAACCTTCGTTACTGTAAAGAACTAGACCATCATGATATTGGATAGCTATGTGACCACTGATGCTGCTGCTTCTATGTGATTCTTTCTGCCTCTTCCTTACTCCAGTTATGCTATGCACTCACATGCTCTGTATTTTCATACATTTGAAAGAATACCATAGTATTATCTTAATCTATTGTGAAATATTAATCCTGCAATAACAATGCACTTTCCGTGATGAATAAATATACGAAACTCAAAGGTTC
>XM_021558279.2
CTTCGGATTGAGAAAACGGAGAGAGCCGAACCATCTTCGTTCCTAGGAAAATCTTGTATGTAAACAAGGTCAGTCATACTGCAGCATACAGTCAACTTGTTCTCTAATAGAATTACTCCTGTGTATAGAAGACACCAATCGGCTTACATTACAACATTGTGACAGAGTCTCAGCACAGTTTCCAAGATGATGCAGTGTTTCCACTTTATAGTCGAGCCGGTCAAGAACATCACAGCCAAGCTTAAGGAAACTCGCACGAGGGCGAAGAATGATAAGAGAGAGCCACTGGAAGAGAATCAGCTGTTTATAGTGGAGCTGGCTAGAGATCTCAATCGAGTGTGCCAGAGGTCTGAGGTGCTGGAGAACATCTGGAAACTAGAGGACATCTggcccactcctctttgcagggCCTTCATCCTGGAGTGGGCGTCTCTGCTGGAGAGCAAGAAGAGGCCCATGCAGTCGGATGGTTGGCCAGAGGAGAGCGAGTGGAGGAAGCAAGACCTGTTCAGTGAGAATGAAATGGAGAACGCTAAGAGGACAATCATCAACTGGACCAAGGACCTGAGAGCCCAACCTGAGCAAAGTGTGTGGCCTGGGGAGGCTGTGGCTCAAGTTCTGGAGGACCTCCAGGCTGCATGGAGGAGTCGCCACATGCCCAACCTCTTGACAGCCATGGAACTGCTCATGTGGGTCTTACTGACACAGGGCCTGGACAAGGAAGCCATCCCTCAACAGTGGCTCATATGGAAGCAGAGGACTCAGAAGATAGGTGCTGCCCGCTACATTCCTCACTCAGTATGGGACTGGATCTCTAATGCAGCAGTGGAGATTTCCCTTGACCTGGACACGGCCAACCCTGACCTGCTGATCTCCAATGACGAGAAGAAGATGCGCTGCGGCTTCGAGAGAAAGGATGTGCCAAACTACCACCAGCGCTTCGATGGCTGGTGGTGCGCCACAGGGGTGGAGGGTTTCAACTCTGGCCGCCACTACTGGGAGGTGGAGGTTGGGGAGCGGGACTTTCGGCTGGGTGTGGCCAAGGAGTCAGCCCTGAGGAAGGGCTTCAAGTCCCTGAACACAGACACGGGCTACCTGACCCTGCGCCTGGAGAGGGGCACGGAGCTCAAGGCCCTGACTGTGCCCTTCACTGCCCTGCCGCCTGGTCTTATCCCCCGCAAGGTGGCCGTCTACCTGGACTACGACCAGGGCCAGCTGTCCTTCTACGACGTAGACAGCCGCTCCCACATCTACACCTACAATGAGAGCTTCAACGAGAAGCTGTTCCCTCTGTTCGGCACGACAGAGATCATTAAGGACCTGGTGATCAAGTCCCCTGGGAGCAAGGCCTATtgcctctgtccctccctgtgcCTGTGGGGCTGAACTTTCCCTCTTAACACCATCCCTCTACCCTATGGTTACCCTCTCACCACTCCTATAGAGTAATCAGAACCTTCGTTACTGTAAAGAACTAGACCATCATGATATTGGATAGCTATGTGACCACTGATGCTGCTGCTTCTATGTGATTCTTTCTGCCTCTTCCTTACTCCAGTTATGCTATGCACTCACATGCTCTGTATTTTCATACATTTGAAAGAATACCATAGTATTATCTTAATCTATTGTGAAATATTAATCCTGCAATAACAATGCACTTTCCGTGATGAATAAATATACGAAACTCAAAGGTT

Function

NR:

description
E3 ubiquitin-protein ligase TRIM58-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558277.2 False 1704 mRNA 0.51 7 46230384 46235866
XM_021558278.2 False 1668 mRNA 0.52 7 46230384 46235927
XM_021558279.2 True 1697 mRNA 0.51 7 46230385 46235863

Neighbor

gene id symbol gene type direction distance location
recql5 LOC106601412 coding downstream 1429 46212178 ~ 46228955 (-)
LOC110486567 LOC106606966 coding downstream 18639 46201026 ~ 46211745 (-)
LOC110486561 LOC106601408 coding downstream 252981 45968064 ~ 45977403 (-)
LOC110486556 LOC106601411 coding downstream 483275 45744953 ~ 45747109 (-)
LOC110486554 cygb coding downstream 513731 45710149 ~ 45716653 (-)
LOC118938311 LOC106601426 coding upstream 9538 46245465 ~ 46254192 (-)
LOC110486575 LOC106596896 coding upstream 100617 46336544 ~ 46422381 (-)
LOC110486578 st6galnac2 coding upstream 186781 46422708 ~ 46428266 (-)
LOC110486579 NA coding upstream 205069 46440996 ~ 46468343 (-)
LOC110486581 jmjd6 coding upstream 236567 46472494 ~ 46482863 (-)
G1180309 LOC106601422 non-coding downstream 47016 46179960 ~ 46183368 (-)
G1180396 LOC106601427 non-coding downstream 53821 46174701 ~ 46176563 (-)
G1180280 NA non-coding downstream 308218 45912130 ~ 45922166 (-)
G1179843 NA non-coding downstream 323482 45906679 ~ 45906902 (-)
G1179842 NA non-coding downstream 323728 45906373 ~ 45906656 (-)
G1180488 LOC106606977 non-coding upstream 33975 46269902 ~ 46272249 (-)
G1180493 NA non-coding upstream 45651 46281578 ~ 46281802 (-)
G1180504 NA non-coding upstream 62101 46298028 ~ 46298267 (-)
G1180506 NA non-coding upstream 66554 46302481 ~ 46302702 (-)
G1180499 NA non-coding upstream 95799 46331726 ~ 46334543 (-)
G1179621 LOC106607015 other downstream 697722 45531858 ~ 45532662 (-)
G1179619 LOC106601391 other downstream 700270 45529436 ~ 45530114 (-)
zgc:171844 LOC106607059 other downstream 1037079 45182660 ~ 45193315 (-)
il-8 il-8 other downstream 1143254 45085269 ~ 45087130 (-)
G1178996 NA other downstream 1178360 45051576 ~ 45052024 (-)
LOC110486586 ubald2 other upstream 277530 46510585 ~ 46535713 (-)
LOC110486590 LOC105022923 other upstream 647501 46827752 ~ 46915018 (-)
LOC110486593 LOC106606954 other upstream 1196869 47432406 ~ 47433949 (-)
LOC110486594 LOC106601485 other upstream 1226354 47460436 ~ 47466735 (-)
LOC110486618 LOC106606909 other upstream 1767104 47999581 ~ 48015951 (-)

Expression


Co-expression Network