LOC110486573 (LOC106601414)


Basic Information

Item Value
gene id LOC110486573
gene name LOC106601414
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46257363 ~ 46272370 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941287.1
AGCAAACGCTCATGAACACTAGAATTGGAAAAATGGTGGCCAGCGTCAGAGTGCAGAAGCTCCTCCGACGATACAAACTAGCGATTGCCGCCGCGTTAACGATTCTTCTGATTCAAGGGCTAGTAGTATGGAGTCTGAGAAGTCTCGAAGAGGGCGAGGCGGAGtctctcggtcccagctttgatgcacctgtactgacatcgCGCTGGATGGTAGCGTGGTGAACAGCCCGTGGCTCGAGTGGTCACACAGAGCTGTCTCACTGAGCTGTGCataaatggagggagaggaagcatCTAAGGAGGGCCCCAGAAGAGGTACTGTGCATAGGagGAAAACGCGGCGGTCTAAGCTACCTGACCACAACAGCCAGGACCCCAAAAGGGAGGCGGTGGCCTGGGAGAGACAGAACGTCTTGTCTGGGAGGAGCGGGGCCCGATGGAACAGCAGGCTGGAGAGGACGGGGGCCACGGCTGCCAGCGCCCTCCGGAGGGGCACCAAGCGCCGGGGGAAGCACACCATCAGGGTGAAGGTGCCCCTGGGCCAGGGGGTAGCAGTTGATGGCGTTCCCCCCCATGACCCCTCCAGCAGCCGTAACTTCACTGATACccgaggtggaggggagggggcagCCAGACTACCCCCTCCAGTCATGCCAGGGGAACCGGGCAGCGTGGAGGGGGCACCCCAAGCCCCCAGCAGCGACTTTGTGCCCAAGTGTGACATCATGGGCAAGGACGCCCTGTCGGCCCTGCACCGCGCCGGCTCGCGGCAGTGCCGGCAGGAGATCGCCAACATTGTGTGCCAGCATCAGGCCGGGCAGCTCATGCCAAGGGCACTGCCTCAGTTCTGCCCGCTGCACGGTTTTTCCAGCCCGGTCCAGACAGCTGATGAGCTGGACAATGACCTGTCCAAGGTGGAGAACCCGGTCAGGGTGGCCTTCGTCCTGGTGGTCCACGGCCGGGCCGTCAGGCAGCTCAAACGCCTCATCAAAGCCATATACCACCGAGACCACTTCTACTACATCCACGTGGACAAGcgtTCCAACTACCTGCATCGGGAGGTGCAGCAGATCGCCCAGCAGTACCCCAATGTGCGTGCCACGCCCTGGCGCATGGTGACCATCTGGGGTGGTGCGAGCCTGCTGAAGGCCTACCTGCACAGCATGCAGGACCTGCTCTCCATGCTGGACTGGAATTGGGACTTCTTCATCAACCTCAGTGCCACTGACTTCCCCACCAGGACCAACGATGAACTGGTGGCTTTTCTGTCACAGCACAGAGACCAGAACTTCCTCAAGTCACATGGGCGGGAGAATGCGAGGTTCATAAAGAAGCAGGGTCTGGACCGGCTGTTCCATGAGTGTGACAACCACATGTGGCGGCTGGGTGAGCGGACCATCCCAGAGGGCCTGGAGGTGTCTGGGGGCTCTGACTGGTTCTCCCTCACCAGGCGCTTCGTAGAGTATGTCATCAACTCCCAGGATGAGCTGGTGGCGGGCCTGAAACAGTTCTACACCTACGCCCTGCTCCCCGCTGAGTCCTTCTTCCACACAGTGCTGGGGAACAGTCACATGTGTGACTCTCTGGTGGACAACAACCTGCGTGTTACCAACTGGAACAGGAAGCTGGGCTGTAAGTGCCAATACAAACACATAGTGGACTGGTGCGGCTGCTCTCCCAACGACTTCAAACCACAGGACCTCGTCAGGATACAGCAACTGACCCGGCCCACGTTCTTTGCCCGAAAGTTTGAGTCCATGGTGAACCAAGAGGCTATAGACATCCTGGACACCCACCTGTATGGACACTACGCCCCAGGGACAGTGGCCATCAAGGCCTACTGGGAGAGCCTGTTTGAGCTGGCGGACGGGGTGGGCTCCCTCAGTGACGTTGCCCTCACGGCCTACTCTTCCTTCTTCCGCCTGGGCCTCAGGAGCCTGGAGAGCAGCCAGACCAGCCTGGAGACCTGCAGGTATGAGCCAATAGGCTACCCGGTGTCGGTGCACCTGTATTTCTACGACGAGCGTTTCCAGGGCTACTTGGTCCGTCAGGAGGTGCAGAAGGTGGGGTCAAGGGTCAGGGAAACGGTGGAGGTGTGGGCCGTGCCTCAGGCCACCATGCAGCTGGAGAACAACCTCCGGGAGTTTGAGAGGCTCAAGAACCTGGAGGTGGGCACAGAGTGGGACCCCAAGGAGAGAATATTCCGGAACTTCGGCGGTGTGATCGGGCCGATGGACGAGCCGGTGGCGGTACAGAAGTGGATTCGGGGGCCCAACCTCACTGCCACCATTGTGTGGATCGACCCCGCCCAGACGGTGGCGGCGTCTTATGACATCAGTGTGGATGTGGACGCAGAGTACACGCAGTACAAGCCCCCGCTGCAGCGGCCGCTCCGCCCCGGGGCCTGGACTGTCAGGGTGCTGAGGCTGTGGGAGCGTGTGGCTGAGGCTCGCTTCCTCGTCATGCCCCTGGCCTTCAAAGGACGAGAGCCACTACGCCAAGAGGAGGACAGCTGGCTGCACGCGGGGCCACCAGGCAACATGTACCTGGAGCAGGGCTTCCAGCAGCTGAGATCTGTTCTGAAGCTGCCCCCACAGGAGCCTGCCCTGCAGGAGGCCCAGCAGAGGGCCCAGCTGGTGGGCAAGCCCCTGGAAGCTTGGGTGGACCGCACCGTGGGGGCCTTCTGGGTGACCGGGGACCTGTGCTCCACCCTGCCCTCCCCGGGCCCCTGCCCTTCCCTTGGCCCCTGTACCAAGTCCACCTGGAGCTCCCTCGCCCCAGACCCTAAGTCAGAACTTGGCCCTGTCAAAAGTGACGGCCGGATCAGGTAGCCCCCCGGACAGGAGGCATGCTGGACTatagtagagggagaggggattATATGTGAGCCCTGAGAAGAGGGGAAGATATGTGAGTCCTGAGTGGGGTCTGGTCTCTAAGGCTAACTCATAAGGCACATAAATAGACACGGCTTCTCCCTACATACGCTGAGGAGTGGCTATGCTCTCAGTTTAGAGGCTACATGCCCTTTTCAGAGGAGATGCGTGGTGGAAATTTGCACACGAAGACTGCAAGACaaagtttttttttgtgttcGAACTTCATTGTTCGTTACATGGACAATTTGTGTTATGTTATCTGTCTGCATATGTCTTCATTCAGGGTCTGTCTGGGTAGAACTTTGGAAAGAGGAGAACCCCACCCGCACATGTTTGAACTCTGTTCAATGCACAGTTTTCTTCTGCTTTAAGGAATTTAAAGCAGTGGCCAACATTTTGACAGTGGCTAAATGCTGTGTTGTATTGTTGTCAGAGGGCAGTGGGTCCTCTGGACTAGTACCTTTGTGCTTATTTTCAAGCATTATCAGAACAGCAGCAGCAGATTGGGGAAGTGCACTTTACTGTAAGACTAAGGTTACACAGGACCGGGTCGATCAGTAGTTGGAGAATGACAACGAGGAGGATTAGGAGCTTAAAAGGTCAAGGTGGAGGTCGTCACAATGGTGACGTGGCATCCTCTTCACTTACTTACATGTCTTTTGTATAAAAGTGCTGCTAGAACGTTGCGGCGTCACTATCACATATCTGACCCAGCTAGCTCACCTGGAGGAGGAAGAATAATAATGTTCTGAGTTACCAGCTGGGAGACAAGTTAAAGTTGGGAGAGTCCTCTTTCCCCCATGAGTTCTGTTTACTGTgacatgtttttaaatgtttgttttgtttgtttcttgAACATTGAGATGTGTCTTTGTTGTCCATGATCACTGCAAAGCAAAGCCACCGGGGGTTTTGTGTGTCAGAGGAAGTGCCTAACTGATGTAGGTAATATTCTAGGCTACAGTGGCCTGGCTCTCCAGTGTGGCATCATCATTTTCACAGTGGACTACATCGCTTCTCAATGGGTCTAGTCATAGTTATGGTATATAGGCCTAGCTAGAGCCATATATTTAGAGTTAGGCAAACTTTTAGAATATTGTTCTAATACTAGACAGTCATGCAAATACATTATAATGCAGAAACCTtgttggcccaactctctaagtACATGGCTCTGGGCTAGCTGCCTCTTCTGTATCAGTGTATATGCAGTGCAGTACTGTCCATGTGGTCTATGCTCTGTATGCCAACAAAGTGAAGACTCTTCTGTCATCTACCTACCACTTTAATGTTACTGGTTGTCCATAAGCATTTCTACAACAATGAAACTCCCATCCAGGAGGGGTCAACATGACTATTTCATGGTCTGGTTAAGAAATCGAAGCTGCCTTTACTTTGTTAATATGAACTGTTTATAATGGGAGAATAGCTTCAAGACGTGCACTTATTTCCCTTTTAGACAATTCTGAAACCCTACCCTATACCTTTGTTTttaattgtaatgttttaaaactaGACTGGCTGAAACTCCtacttttcttgtttttttttcagtCTCTGAGTTTACAAGTGACCTTGTTTCCCTTGCACACTTGCTTCAGTGATGCTTCCATTTAACAGAAAGAATAGAAGAGCACCGTTTAGTGTAAATGGAATAGATTATTCATATTTTAGTCTTTGAGAAATATATATTTGTCCATCCATTCAATATCAACTCCTTTTTCAAACTATTGAGAACCACttcttgtattattttttttggaCACATCACACTTCGTTCAATGTCACTTCTGTCCACGCTTCCGTCCACAGCCCACTCATGACTCACTCTGATGATGACATAGTGGCACTGGCTCCCTGACTCAGGCATGACAGTGCTGGACTGAAGAGGGGACTGCTGGCCAATCACAGAACGCCTCTGGTAAAACATGGCAACCGGTTGACTGGTGGCACAATAACAAAAAACAAACGAATAAAAACAATCCAATCTTGTCCAGTATTGCTTTTTTTGGGGTATTTTGTTTTTGACTAGTTGATTGATTTCAAATAGCAGAATGAAATGTATTCTGCTAGTGAGTAATATCAGTGCTTTATGTGATTATTT
>XM_036941285.1
GCAAACGCTCATGAACACTAGAATTGGAAAAATGGTGGCCAGCGTCAGAGTGCAGAAGCTCCTCCGACGATACAAACTAGCGATTGCCGCCGCGTTAACGATTCTTCTGATTCAAGGGCTAGTAGTATGGAGTCTGAGAAGTCTCGAAGAGGGCGAGGCGGAGagGAAAACGCGGCGGTCTAAGCTACCTGACCACAACAGCCAGGACCCCAAAAGGGAGGCGGTGGCCTGGGAGAGACAGAACGTCTTGTCTGGGAGGAGCGGGGCCCGATGGAACAGCAGGCTGGAGAGGACGGGGGCCACGGCTGCCAGCGCCCTCCGGAGGGGCACCAAGCGCCGGGGGAAGCACACCATCAGGGTGAAGGTGCCCCTGGGCCAGGGGGTAGCAGTTGATGGCGTTCCCCCCCATGACCCCTCCAGCAGCCGTAACTTCACTGATACccgaggtggaggggagggggcagCCAGACTACCCCCTCCAGTCATGCCAGGGGAACCGGGCAGCGTGGAGGGGGCACCCCAAGCCCCCAGCAGCGACTTTGTGCCCAAGTGTGACATCATGGGCAAGGACGCCCTGTCGGCCCTGCACCGCGCCGGCTCGCGGCAGTGCCGGCAGGAGATCGCCAACATTGTGTGCCAGCATCAGGCCGGGCAGCTCATGCCAAGGGCACTGCCTCAGTTCTGCCCGCTGCACGGTTTTTCCAGCCCGGTCCAGACAGCTGATGAGCTGGACAATGACCTGTCCAAGGTGGAGAACCCGGTCAGGGTGGCCTTCGTCCTGGTGGTCCACGGCCGGGCCGTCAGGCAGCTCAAACGCCTCATCAAAGCCATATACCACCGAGACCACTTCTACTACATCCACGTGGACAAGcgtTCCAACTACCTGCATCGGGAGGTGCAGCAGATCGCCCAGCAGTACCCCAATGTGCGTGCCACGCCCTGGCGCATGGTGACCATCTGGGGTGGTGCGAGCCTGCTGAAGGCCTACCTGCACAGCATGCAGGACCTGCTCTCCATGCTGGACTGGAATTGGGACTTCTTCATCAACCTCAGTGCCACTGACTTCCCCACCAGGACCAACGATGAACTGGTGGCTTTTCTGTCACAGCACAGAGACCAGAACTTCCTCAAGTCACATGGGCGGGAGAATGCGAGGTTCATAAAGAAGCAGGGTCTGGACCGGCTGTTCCATGAGTGTGACAACCACATGTGGCGGCTGGGTGAGCGGACCATCCCAGAGGGCCTGGAGGTGTCTGGGGGCTCTGACTGGTTCTCCCTCACCAGGCGCTTCGTAGAGTATGTCATCAACTCCCAGGATGAGCTGGTGGCGGGCCTGAAACAGTTCTACACCTACGCCCTGCTCCCCGCTGAGTCCTTCTTCCACACAGTGCTGGGGAACAGTCACATGTGTGACTCTCTGGTGGACAACAACCTGCGTGTTACCAACTGGAACAGGAAGCTGGGCTGTAAGTGCCAATACAAACACATAGTGGACTGGTGCGGCTGCTCTCCCAACGACTTCAAACCACAGGACCTCGTCAGGATACAGCAACTGACCCGGCCCACGTTCTTTGCCCGAAAGTTTGAGTCCATGGTGAACCAAGAGGCTATAGACATCCTGGACACCCACCTGTATGGACACTACGCCCCAGGGACAGTGGCCATCAAGGCCTACTGGGAGAGCCTGTTTGAGCTGGCGGACGGGGTGGGCTCCCTCAGTGACGTTGCCCTCACGGCCTACTCTTCCTTCTTCCGCCTGGGCCTCAGGAGCCTGGAGAGCAGCCAGACCAGCCTGGAGACCTGCAGGTATGAGCCAATAGGCTACCCGGTGTCGGTGCACCTGTATTTCTACGACGAGCGTTTCCAGGGCTACTTGGTCCGTCAGGAGGTGCAGAAGGTGGGGTCAAGGGTCAGGGAAACGGTGGAGGTGTGGGCCGTGCCTCAGGCCACCATGCAGCTGGAGAACAACCTCCGGGAGTTTGAGAGGCTCAAGAACCTGGAGGTGGGCACAGAGTGGGACCCCAAGGAGAGAATATTCCGGAACTTCGGCGGTGTGATCGGGCCGATGGACGAGCCGGTGGCGGTACAGAAGTGGATTCGGGGGCCCAACCTCACTGCCACCATTGTGTGGATCGACCCCGCCCAGACGGTGGCGGCGTCTTATGACATCAGTGTGGATGTGGACGCAGAGTACACGCAGTACAAGCCCCCGCTGCAGCGGCCGCTCCGCCCCGGGGCCTGGACTGTCAGGGTGCTGAGGCTGTGGGAGCGTGTGGCTGAGGCTCGCTTCCTCGTCATGCCCCTGGCCTTCAAAGGACGAGAGCCACTACGCCAAGAGGAGGACAGCTGGCTGCACGCGGGGCCACCAGGCAACATGTACCTGGAGCAGGGCTTCCAGCAGCTGAGATCTGTTCTGAAGCTGCCCCCACAGGAGCCTGCCCTGCAGGAGGCCCAGCAGAGGGCCCAGCTGGTGGGCAAGCCCCTGGAAGCTTGGGTGGACCGCACCGTGGGGGCCTTCTGGGTGACCGGGGACCTGTGCTCCACCCTGCCCTCCCCGGGCCCCTGCCCTTCCCTTGGCCCCTGTACCAAGTCCACCTGGAGCTCCCTCGCCCCAGACCCTAAGTCAGAACTTGGCCCTGTCAAAAGTGACGGCCGGATCAGGTAGCCCCCCGGACAGGAGGCATGCTGGACTatagtagagggagaggggattATATGTGAGCCCTGAGAAGAGGGGAAGATATGTGAGTCCTGAGTGGGGTCTGGTCTCTAAGGCTAACTCATAAGGCACATAAATAGACACGGCTTCTCCCTACATACGCTGAGGAGTGGCTATGCTCTCAGTTTAGAGGCTACATGCCCTTTTCAGAGGAGATGCGTGGTGGAAATTTGCACACGAAGACTGCAAGACaaagtttttttttgtgttcGAACTTCATTGTTCGTTACATGGACAATTTGTGTTATGTTATCTGTCTGCATATGTCTTCATTCAGGGTCTGTCTGGGTAGAACTTTGGAAAGAGGAGAACCCCACCCGCACATGTTTGAACTCTGTTCAATGCACAGTTTTCTTCTGCTTTAAGGAATTTAAAGCAGTGGCCAACATTTTGACAGTGGCTAAATGCTGTGTTGTATTGTTGTCAGAGGGCAGTGGGTCCTCTGGACTAGTACCTTTGTGCTTATTTTCAAGCATTATCAGAACAGCAGCAGCAGATTGGGGAAGTGCACTTTACTGTAAGACTAAGGTTACACAGGACCGGGTCGATCAGTAGTTGGAGAATGACAACGAGGAGGATTAGGAGCTTAAAAGGTCAAGGTGGAGGTCGTCACAATGGTGACGTGGCATCCTCTTCACTTACTTACATGTCTTTTGTATAAAAGTGCTGCTAGAACGTTGCGGCGTCACTATCACATATCTGACCCAGCTAGCTCACCTGGAGGAGGAAGAATAATAATGTTCTGAGTTACCAGCTGGGAGACAAGTTAAAGTTGGGAGAGTCCTCTTTCCCCCATGAGTTCTGTTTACTGTgacatgtttttaaatgtttgttttgtttgtttcttgAACATTGAGATGTGTCTTTGTTGTCCATGATCACTGCAAAGCAAAGCCACCGGGGGTTTTGTGTGTCAGAGGAAGTGCCTAACTGATGTAGGTAATATTCTAGGCTACAGTGGCCTGGCTCTCCAGTGTGGCATCATCATTTTCACAGTGGACTACATCGCTTCTCAATGGGTCTAGTCATAGTTATGGTATATAGGCCTAGCTAGAGCCATATATTTAGAGTTAGGCAAACTTTTAGAATATTGTTCTAATACTAGACAGTCATGCAAATACATTATAATGCAGAAACCTtgttggcccaactctctaagtACATGGCTCTGGGCTAGCTGCCTCTTCTGTATCAGTGTATATGCAGTGCAGTACTGTCCATGTGGTCTATGCTCTGTATGCCAACAAAGTGAAGACTCTTCTGTCATCTACCTACCACTTTAATGTTACTGGTTGTCCATAAGCATTTCTACAACAATGAAACTCCCATCCAGGAGGGGTCAACATGACTATTTCATGGTCTGGTTAAGAAATCGAAGCTGCCTTTACTTTGTTAATATGAACTGTTTATAATGGGAGAATAGCTTCAAGACGTGCACTTATTTCCCTTTTAGACAATTCTGAAACCCTACCCTATACCTTTGTTTttaattgtaatgttttaaaactaGACTGGCTGAAACTCCtacttttcttgtttttttttcagtCTCTGAGTTTACAAGTGACCTTGTTTCCCTTGCACACTTGCTTCAGTGATGCTTCCATTTAACAGAAAGAATAGAAGAGCACCGTTTAGTGTAAATGGAATAGATTATTCATATTTTAGTCTTTGAGAAATATATATTTGTCCATCCATTCAATATCAACTCCTTTTTCAAACTATTGAGAACCACttcttgtattattttttttggaCACATCACACTTCGTTCAATGTCACTTCTGTCCACGCTTCCGTCCACAGCCCACTCATGACTCACTCTGATGATGACATAGTGGCACTGGCTCCCTGACTCAGGCATGACAGTGCTGGACTGAAGAGGGGACTGCTGGCCAATCACAGAACGCCTCTGGTAAAACATGGCAACCGGTTGACTGGTGGCACAATAACAAAAAACAAACGAATAAAAACAATCCAATCTTGTCCAGTATTGCTTTTTTTGGGGTATTTTGTTTTTGACTAGTTGATTGATTTCAAATAGCAGAATGAAATGTATTCTGCTAGTGAGTAATATCAGTGCTTTATGTGATTATTT

Function

NR:

description
xylosyltransferase 2-like

GO:

id name namespace
GO:0006024 glycosaminoglycan biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0030158 protein xylosyltransferase activity molecular_function
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K00771 XYLT; protein xylosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941287.1 False 4985 mRNA 0.53 12 46257363 46272370
XM_036941285.1 True 4817 mRNA 0.53 11 46257364 46272370

Neighbor

gene id symbol gene type direction distance location
LOC110486571 nupl coding upstream 26980 46228993 ~ 46230383 (+)
LOC110486572 LOC106601412 coding upstream 31606 46219879 ~ 46226688 (+)
LOC110486565 LOC106606967 coding upstream 57247 46184406 ~ 46200116 (+)
LOC100136054 LOC106601422 coding upstream 73983 46179912 ~ 46183380 (+)
LOC118936304 LOC106601427 coding upstream 80805 46173911 ~ 46176562 (+)
LOC110486574 LOC106606976 coding downstream 1954 46274324 ~ 46294468 (+)
LOC110485193 LOC106601421 coding downstream 30381 46302751 ~ 46336386 (+)
mettl23 mettl23 coding downstream 210766 46483136 ~ 46485100 (+)
LOC110486580 mfs11 coding downstream 215730 46488100 ~ 46493732 (+)
LOC110486584 LOC106606957 coding downstream 221576 46493946 ~ 46509241 (+)
G1180008 LOC106601418 non-coding upstream 22302 46230385 ~ 46235061 (+)
G1180010 LOC106601417 non-coding upstream 55059 46200500 ~ 46202304 (+)
LOC110486562 peca1 non-coding upstream 121839 46130578 ~ 46138965 (+)
G1179970 NA non-coding upstream 139766 46117131 ~ 46117597 (+)
G1180070 NA non-coding downstream 24410 46296780 ~ 46297068 (+)
G1180071 NA non-coding downstream 25841 46298211 ~ 46298451 (+)
G1180093 NA non-coding downstream 75190 46347560 ~ 46348851 (+)
G1180133 NA non-coding downstream 118109 46390479 ~ 46442094 (+)
G1180161 NA non-coding downstream 154550 46426920 ~ 46431222 (+)
LOC110485192 LOC106601391 other upstream 727235 45529398 ~ 45554103 (+)
G1179362 NA other upstream 794420 45462588 ~ 45462943 (+)
G1179156 NA other upstream 944330 45312330 ~ 45313033 (+)
LOC110486526 smarca4 other upstream 1287644 44967368 ~ 44996127 (+)
G1181472 NA other downstream 1101793 47374163 ~ 47374477 (+)
tmem100a LOC106606948 other downstream 1195746 47468012 ~ 47471205 (+)
G1181636 NA other downstream 1276909 47549279 ~ 47549548 (+)
G1181955 NA other downstream 1469991 47742361 ~ 47743064 (+)

Expression


Co-expression Network