LOC110486574 (LOC106606976)


Basic Information

Item Value
gene id LOC110486574
gene name LOC106606976
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46274324 ~ 46294468 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558285.2
GATCCCCCTAGGTGGCTATAGTTCTTGCCAGGAGCATCAGTATCAAACCTGCAAATGCAAGGAATTTAGACAAGGAGGGGGCGGTGAGTGTAGAGAAGAGCGACAGCAAAGGAGAGAGCGGGGAAGGGAGATAAAGTTATTGCGGCGACGTGTCTAAAAGCTCtgcttattaaaaaaaataaagcttCTCAACTCGTGCCTTGACAAAAGGATTCTATAGGAACAAATAAAGAAGATGGATATCATTATGGAGAATATCCCTGAAATTGAATGTGTTGACCAGGGCGAGGGGCTTCACTCAGACAGTGCCTATGGGTCATCTGCGGTGGACACGGATACAGAGGACTGCCTGACTCCCCTCGAGATCACTTTACACTATAACGAGGACCTAATGCACAAGACCATCATGGTGGGAGACAGCGGTGTGGGGAAGACCTCTCTGCTGGTCCAGTATGACCAAGGCAAGTTCATACCCGGCTCCTTCTCTGCCACTGTGGGCATCGGCTTCACGAATAAAGTTGTGACGGTGGACAACGCGAAGGTCAAACTCCAGATCTGGGATACTGCAGGACAGGAGAGATTCCGCAGTGTCACGCACGCCTACTACAGAGACGCACAAGCCCTCCTCCTGCTCTATGACATCACCAGCAAGTCATCCTTTGACAACATCAGGGCCTGGCTGACTGAAATTCACGAGTATGCTCAGAAGGATGTGGTCATCATGTTGCTTGGCAACAAGACGGACATGGCCGGAGAGAGAGTCATCAAGcgtgaggagggagagaagctGGCCAAGgaATATGGAGTCCCTTTCATGGAGACCAGTGCCAAGACTGGAGTCAACGTAGAGCTGGCCTTCCTGGCTGTAGCAAAGGAGTTGAAGCACAGAGCTGCCCAGCAGCCCAACGAGCCCAAGTTCCAGATCCACGACTACATTGCGTCTGAGAAGCAGAAGTCTGGCTGCTGTGGTGGCTACATGTAGCTGAACCTCTCACCAACTGTTACACCACACCAGGCCACagtgagagaggagcgagagagatacaaacatctactgagggagataaagagagagagacatagagcagtagagagacagtcCCCCTAAAATAGCATCATCCGATAGCGAGTAGTCAAAAAGAGCAGAGCAACCACATTGTGAAAAAGAGAGCACCTGGTCTGCTCACCACCTACTTGGAAAGCCTATGGCAACTAGACAACCCTCATTCTGCCCCTATTAGGAGAAAAACCATGTCAGTATTTTCAGTTGGATAGAAATCCTTTAACAGTGTATTTAAAAAGTGAATTTATCTTTGAAACATGCTCAGATCATTTAGTTAATGTGTATCACATGCTGCAGCCTGTCAGCCTGTCAGCCGTACTCATTATTGCCATAAGGAAGGATTGGAAATCCAAATGGAATTTCTTGCCCCAATATTGCCATATTTACAAAGAAATGAAGAAATGATCTGATCACTTTATGTAAAGATGTTAGCTGGAATGAAATACAGATTTTTTGGGGCTCATGGCTTCATATGTTTCACCACATTCTATTCAGGACTAAATGccattatacatgttgtatgagGAGTACGAGGAGTACCCTCTACTACTGCGGTGTCATACACAGCCTGTCCCAGATGCGGCCTCTACCGGCTAAAAATATGTCTAATGACAGTCATTTTGTAATTATACTCCAAATTAAAAGTATTTTCTGAAATGTTGTGGTGAAATGTTAATTGAGGTGGTGGTCAGAAGTTCCAGCATGAGTTTTGATTTGCTTTTAAATGTGCCATCCACCATGTGCCATCCACCAATGAGAGAGCTCCCTCAGACACTGTAATGGATGTTATTGTTGTGTCTCTACTGTACATGGGTTGTTCATGGGTTGCATTGTGTAAAATGTTCCTTTGTATTTGGTTCATTATGAATGTTTGCTTATTGAATTTGCTTGATGTCACAATTATTGTCACTCTCTATGGAGGTGTCACAGTGATCACAAAGTGCCATGGAAAAGTGCTTTGTTATCGTACAGTATATAAAAACTATTTTTTGTAATGAAga
>XM_021558286.2
CAGTACCACCTGTGACTAATAACTCGTGCCATCACTGCCTGTTGCGGCCGTGGCTCGGTTGAAGACCTAGTTGTTTTCATTTATGAAAATGACAAAACACTGCCTAATTTCATAGGCCTAAATAGCATTATCTTCATTGGACAAATGACAATAGCAACGTCGTTTCATCTGCCAACGCGTAAAGAATGATGCGGATCGGTTCTAACGTTCTGCATAACTGAGAAATGTTTCCGCATATTGATCATTTTTTCTCCGCGAATGTAGCCACGTTCTCAAGAGAATCCCCCTTTAAGTTTTAACCACGACTCTATGATTGCCATTAGTTGATTCAGCGTCAAGAAATTGTTCTTAGAAAGCGCTGGGTGGTTTTGGACAACGCTAAGTGACTGCCGATGGACTCATTGCTCGTGTTAACTGGTTTTGAGTCACTGGCATCTCGGGAGGAACATCGCGCGGCGCGCTGACAGATCTCGGTGATACTGTGGTGATAGTCATTGCGATGTCCACAAAGAAGGCATCGTTGAAGGATAAAGAGACTAAAAACGGAACATCAAAATATGTGTTGGAGAGATGCGCCTCGGTTTGCGAGTATTTTGATATTGCCTTCAAGGTGATGCTACTGGGAGACTCTGCGGTGGGGAAGACATGTGTGCTGGTGCGCTTTAAAGACGGGGCCTTTTTGGGAGGCAACTTCATAGCCACCGTGGGAATAGACTTTAGGAATAAAGTTGTGACGGTGGACAACGCGAAGGTCAAACTCCAGATCTGGGATACTGCAGGACAGGAGAGATTCCGCAGTGTCACGCACGCCTACTACAGAGACGCACAAGCCCTCCTCCTGCTCTATGACATCACCAGCAAGTCATCCTTTGACAACATCAGGGCCTGGCTGACTGAAATTCACGAGTATGCTCAGAAGGATGTGGTCATCATGTTGCTTGGCAACAAGACGGACATGGCCGGAGAGAGAGTCATCAAGcgtgaggagggagagaagctGGCCAAGgaATATGGAGTCCCTTTCATGGAGACCAGTGCCAAGACTGGAGTCAACGTAGAGCTGGCCTTCCTGGCTGTAGCAAAGGAGTTGAAGCACAGAGCTGCCCAGCAGCCCAACGAGCCCAAGTTCCAGATCCACGACTACATTGCGTCTGAGAAGCAGAAGTCTGGCTGCTGTGGTGGCTACATGTAGCTGAACCTCTCACCAACTGTTACACCACACCAGGCCACagtgagagaggagcgagagagatacaaacatctactgagggagataaagagagagagacatagagcagtagagagacagtcCCCCTAAAATAGCATCATCCGATAGCGAGTAGTCAAAAAGAGCAGAGCAACCACATTGTGAAAAAGAGAGCACCTGGTCTGCTCACCACCTACTTGGAAAGCCTATGGCAACTAGACAACCCTCATTCTGCCCCTATTAGGAGAAAAACCATGTCAGTATTTTCAGTTGGATAGAAATCCTTTAACAGTGTATTTAAAAAGTGAATTTATCTTTGAAACATGCTCAGATCATTTAGTTAATGTGTATCACATGCTGCAGCCTGTCAGCCTGTCAGCCGTACTCATTATTGCCATAAGGAAGGATTGGAAATCCAAATGGAATTTCTTGCCCCAATATTGCCATATTTACAAAGAAATGAAGAAATGATCTGATCACTTTATGTAAAGATGTTAGCTGGAATGAAATACAGATTTTTTGGGGCTCATGGCTTCATATGTTTCACCACATTCTATTCAGGACTAAATGccattatacatgttgtatgagGAGTACGAGGAGTACCCTCTACTACTGCGGTGTCATACACAGCCTGTCCCAGATGCGGCCTCTACCGGCTAAAAATATGTCTAATGACAGTCATTTTGTAATTATACTCCAAATTAAAAGTATTTTCTGAAATGTTGTGGTGAAATGTTAATTGAGGTGGTGGTCAGAAGTTCCAGCATGAGTTTTGATTTGCTTTTAAATGTGCCATCCACCATGTGCCATCCACCAATGAGAGAGCTCCCTCAGACACTGTAATGGATGTTATTGTTGTGTCTCTACTGTACATGGGTTGTTCATGGGTTGCATTGTGTAAAATGTTCCTTTGTATTTGGTTCATTATGAATGTTTGCTTATTGAATTTGCTTGATGTCACAATTATTGTCACTCTCTATGGAGGTGTCACAGTGATCACAAAGTGCCATGGAAAAGTGCTTTGTTATCGTACAGTATATAAAAACTATTTTTTGTAATGAAga

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K07914 RAB37; Ras-related protein Rab-37

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558285.2 False 2064 mRNA 0.45 9 46274324 46294468
XM_021558286.2 True 2274 mRNA 0.44 9 46282652 46294468

Neighbor

gene id symbol gene type direction distance location
LOC110486573 LOC106601414 coding upstream 1954 46257363 ~ 46272370 (+)
LOC110486571 nupl coding upstream 43941 46228993 ~ 46230383 (+)
LOC110486572 LOC106601412 coding upstream 48567 46219879 ~ 46226688 (+)
LOC110486565 LOC106606967 coding upstream 74208 46184406 ~ 46200116 (+)
LOC100136054 LOC106601422 coding upstream 90944 46179912 ~ 46183380 (+)
LOC110485193 LOC106601421 coding downstream 8283 46302751 ~ 46336386 (+)
mettl23 mettl23 coding downstream 188668 46483136 ~ 46485100 (+)
LOC110486580 mfs11 coding downstream 193632 46488100 ~ 46493732 (+)
LOC110486584 LOC106606957 coding downstream 199478 46493946 ~ 46509241 (+)
foxj1a LOC106601528 coding downstream 247724 46542192 ~ 46547913 (+)
G1180058 NA non-coding upstream 6399 46267530 ~ 46267925 (+)
G1180008 LOC106601418 non-coding upstream 39263 46230385 ~ 46235061 (+)
G1180010 LOC106601417 non-coding upstream 72020 46200500 ~ 46202304 (+)
LOC110486562 peca1 non-coding upstream 138800 46130578 ~ 46138965 (+)
G1180070 NA non-coding downstream 2312 46296780 ~ 46297068 (+)
G1180071 NA non-coding downstream 3743 46298211 ~ 46298451 (+)
G1180093 NA non-coding downstream 53092 46347560 ~ 46348851 (+)
G1180133 NA non-coding downstream 96011 46390479 ~ 46442094 (+)
G1180161 NA non-coding downstream 132452 46426920 ~ 46431222 (+)
G1180047 NA other upstream 723 46239144 ~ 46273601 (+)
LOC118936304 LOC106601427 other upstream 97762 46173911 ~ 46176562 (+)
LOC110485192 LOC106601391 other upstream 744196 45529398 ~ 45554103 (+)
G1179362 NA other upstream 811381 45462588 ~ 45462943 (+)
G1179156 NA other upstream 961291 45312330 ~ 45313033 (+)
G1181472 NA other downstream 1079695 47374163 ~ 47374477 (+)
tmem100a LOC106606948 other downstream 1173648 47468012 ~ 47471205 (+)
G1181636 NA other downstream 1254811 47549279 ~ 47549548 (+)
G1181955 NA other downstream 1447893 47742361 ~ 47743064 (+)

Expression


Co-expression Network