LOC110485193 (LOC106601421)


Basic Information

Item Value
gene id LOC110485193
gene name LOC106601421
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46302751 ~ 46336386 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941296.1
GTTTAATTCAGTGTCAGATTAGAGAATAGTGTTTTGGAGAAAAGTCAACGCATACATATAGTTAGTAGAACTTCAGGTTTGGGCGACACATCTCGGGTTGGCATACATCCCCTGTATGCACAAAGTTTAGGAGTTGATTTTGAAAGTGAGTTGCGACTGCGGGTGACATCCAGTCACCACGGACGGCGCCTTATAAACAGACCGATTGGATGCCAGACGCTCTTCCTTGAGAACGGTAGAGAGATTTCTGTTGACGGGTACCACTCGTGCTCAGCATCCCAAACTGAGTTTACTTGGCAACTTCCAGCTAGTGAACGATCATTCTCACAAGCAACGGGTTGAATTGGTGAAATAAATAGCAGAAACTATGCCCAGCAAAAGTGAAGATAATCGGCCAAGACTCTGCCTGCTGGAGAAAGGGGACAATGGTTATGGGTTCCATCTCCACGGTGAGAAGGGTAAGACCGGGCAGTTCATACGGCTTGTGGAGCCCGGCAGTCCGTCGGAAACTTCTGGGATTCGCGCGGGGGACCGACTAGTGTTCGTGAACGGGGAGAACGTGGAGAGCGAGAGCCATCAACAGGTTGTGTCCCGGATAAAAGCCACGGTGGGCCAGCTCGAGCTCATTGTTGTCGACCAGGACACTGAGCAACTGTTGAAAAAACACAAGATGAAGTGTCTCAAAGAATATGTCACGGAGCCCATTCCTTTACCCAGCGACGACGAGTCAGAAAGCGAAGACGTTAAGGAGAACGGGACACCATGCGGGACACCGAGAGAATCCACACCCATCCCGGGAAATAACGGAGATCACCATGGCCACGTAGAGCTCCATAGCCATGTTGAGAAAAAGCTAAGCATCAACTCTGAGAAGGACGTGCAGAGTGAGCTGAGGCCGCGTCTGTGTGTGATCAAGAAGGGGCCTCATGGCTACGGCTTCAACCTGCACAGTGAGAAGGCCAGACCAGGCCAGTACATCAGAGCAGTGGATGAGGACTCACCTGCACAGAGGTCAGGCCTGCTGGCCAAGGACATGATAGTACAGgtgaaTGGTATGACAGTGGAGGGAAAGCAGCACTCGGAGGTGGTGGCAGCCATCAAGTCTGGTGGTGAGGAGACCTCTCTACTGGTTGTGGACACAGACACAGATGCCTTCTTCAGGAGGTGCAGAGTCACTCCCACCCCAGAACACATCACAGGATCTTTGCCTGAGCCTGTCGTCAACGGAGACATGGAAGAGACGGCGAATGGAAATGGAAAACTGGCCAAAGAGGTGGAGCAGGACTCTAAGCTGTCAATCAGCCCGTCTCCAAGCAACACCTCCTCCAACGCCTCACTCACAACCCCACCCACAGAGTTGTCTGAGCCAGTGATCGTGGGCGCCATCCCGGGTCTGAACCTGTCCCTGCAGCAGGTTAAGGAGCGTGCTCACCAGAAACGCTCCAACAAGAGGGCCCCGCCCATGGACTGGAGCAAGAAAAATGAACTGTTCAGCAACCTGTAGAGAGAGCACCTCGCCctgcacacacccacatacagtaGACACTCACAGAGAGgtcagtgaaggagagagaggggttgttcTAAGCCCCATGTTTTCTATGACTCATTAAAACCAGCAGTTTAACTATTGGTGAGGGAGAATACAGGTATatgtatgtaaaatatatacacacatatttgTATTATATTCCAGATGCTATAAATGATGTGCTAACAATATCTAGACGAAAATGCCAATGTTGGAAAGGAAACAGCTGCATCAGATAAGAATCTTTGTATTGTGATTTGAAAATCAATTTTTAATTATTCCATTTCACGTGTCgaagtggttgtgtgtgtgtgttttgtacctGGGTGTATATGCCCAGAAGACCCTGGAAGTCCCTGCTGGTCATAGCCTGGTGCCTGTCGGTATAGTGGAGTAGGTCTCTCTTATGGCCATTCCTCTACACGTTAATcagtcattaaaacacattaaaCAATATTTTTGAATGGGACCAGCCACTTACATATCCATCCAGTCTATCACCTTTCAGGGACCAAATAGCAAGCCTCTTCACACTTCCAGTCAGATGCAAATGTCTTTCATGTAGCTGAGCTTTGGGTCAGTCGAGCTTCAGAAAGAAATTGGCTTCTGACTGGAAGTGTGCGGAGACTTTCTCATGTTTCTCCAGTTTTTGCCTTCAGCACCTtcactaatcagctctgggtgtgtggtagattctATTATCTGCAAACCTTTTAGGGACCAAAACACCTGAAGAACGACaaccacagtcagtcagtcagtcagtcattgggGAACGACATGTTGGTGCAGTGTCCATCCATACCAGTCTAACTTCAGTAAATGTGAAGGCTGAAACACTTCTGTCCATAGCATTGCCATTACCACTGTATATTGTGATACTTTTCATTTCAGAGTTTTTCTTTATGGCCATTGTCAAAATGCTTTGAGGTTTTTACGTTTACGTAGATGTACTTAAACATAATTTCTTTCTTTAATAAGAATATAAATGTCTGCGCTTCACTAGATTTTGTGTATGTTCAGTATTGAGAATGACAGTGAGATTCACTATTTTGACTATTGAATTGTTTGGGGGTGTTATCATTCTCTTTAACTGTTCATGTTATTTCTATACTGTATTAAATTGTAGATCTCA
>TU1345717
acacacacacacacacacacacatggatggacACACACTCCCCTCTCGCCACCCCTCTGGCCAGCACTTGTGTTTGGTTTCCAAGGCGCTGGCTCCAAGTGGCCTCTCAGCCTGTAGTGTTAGCTGTATTGGGACTGAAGAGCCTCTTGTCCATGTGCAAACAGTGAGGAGGGACCCAAGGAGCACAGAGGCAGCTTCAACAGGTTTCAGAACAGCCCAGGGGGACGCAGACCAGAGGGACCCAAGGAGCACAGAGGCACATAGAGGCAGCTTCAACAGGTTTCAGAACAGCCCAGGGGGACGCAGACCAGGGTCAGGCTATCTTTAGATGATAACAGGATCTTTGCCTGAGCCTGTCGTCAACGGAGACATGGAAGAGACGGCGAATGGAAATGGAAAACTGGCCAAAGAGGTGGAGCAGGACTCTAAGCTGTCAATCAGCCCGTCTCCAAGCAACACCTCCTCCAACGCCTCACTCACAACCCCACCCACAGAGTTGTCTGAGCCAGTGATCGTGGGCGCCATCCCGGGTCTGAACCTGTCCCTGCAGCAGGTTAAGGAGCGTGCTCACCAGAAACGCTCCAACAAGAGGGCCCCGCCCATGGACTGGAGCAAGAAAAATGAACTGTTCAGCAACCTGTAGAGAGAGCACCTCGCCctgcacacacccacatacagtaGACACTCACAGAGAGgtcagtgaaggagagagaggggttgttcTAAGCCCCATGTTTTCTATGACTCATTAAAACCAGCAGTTTAACTATTGGTGAGGGAGAATACAGGTATatgtatgtaaaatatatacacacatatttgTATTATATTCCAGATGCTATAAATGATGTGCTAACAATATCTAGACGAAAATGCCAATGTTGGAAAGGAAACAGCTGCATCAGATAAGAATCTTTGTATTGTGATTTGAAAATCAATTTTTAATTATTCCATTTCACGTGTCgaagtggttgtgtgtgtgtgttttgtacctGGGTGTATATGCCCAGAAGACCCTGGAAGTCCCTGCTGGTCATAGCCTGGTGCCTGTCGGTATAGTGGAGTAGGTCTCTCTTATGGCCATTCCTCTACACGTTAATcagtcattaaaacacattaaaCAATATTTTTGAATGGGACCAGCCACTTACATATCCATCCAGTCTATCACCTTTCAGGGACCAAATAGCAAGCCTCTTCACACTTCCAGTCAGATGCAAATGTCTTTCATGTAGCTGAGCTTTGGGTCAGTCGAGCTTCAGAAAGAAATTGGCTTCTGACTGGAAGTGTGCGGAGACTTTCTCATGTTTCTCCAGTTTTTGCCTTCAGCACCTtcactaatcagctctgggtgtgtggtagattctATTATCTGCAAACCTTTTAGGGACCAAAACACCTGAAGAACGACaaccacagtcagtcagtcagtcagtcattgggGAACGACATGTTGGTGCAGTGTCCATCCATACCAGTCTAACTTCAGTAAATGTGAAGGCTGAAACACTTCTGTCCATAGCATTGCCATTACCACTGTATATTGTGATACTTTTCATTTCAGAGTTTTTCTTTATGGCCATTGTCAAAATGCTTTGAGGTTTTTACGTTTACGTAGATGTACTTAAACATAATTTCTTTCTTTAATAAGAATATAAATGTCTGCGCTTCACTAGATTTTGTGTATGTTCAGTATT

Function

NR:

description
PREDICTED: Na(+)/H(+) exchange regulatory cofactor NHE-RF1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941296.1 False 2666 mRNA 0.47 6 46302751 46336386
TU1345717 True 1697 TUCP 0.46 4 46331718 46336278

Neighbor

gene id symbol gene type direction distance location
LOC110486574 LOC106606976 coding upstream 8283 46274324 ~ 46294468 (+)
LOC110486573 LOC106601414 coding upstream 30381 46257363 ~ 46272370 (+)
LOC110486571 nupl coding upstream 72368 46228993 ~ 46230383 (+)
LOC110486572 LOC106601412 coding upstream 76994 46219879 ~ 46226688 (+)
LOC110486565 LOC106606967 coding upstream 102635 46184406 ~ 46200116 (+)
mettl23 mettl23 coding downstream 146750 46483136 ~ 46485100 (+)
LOC110486580 mfs11 coding downstream 151714 46488100 ~ 46493732 (+)
LOC110486584 LOC106606957 coding downstream 157560 46493946 ~ 46509241 (+)
foxj1a LOC106601528 coding downstream 205806 46542192 ~ 46547913 (+)
LOC110486588 LOC106602603 coding downstream 223422 46559808 ~ 46565672 (+)
G1180071 NA non-coding upstream 4300 46298211 ~ 46298451 (+)
G1180070 NA non-coding upstream 5683 46296780 ~ 46297068 (+)
G1180058 NA non-coding upstream 34826 46267530 ~ 46267925 (+)
G1180008 LOC106601418 non-coding upstream 67690 46230385 ~ 46235061 (+)
G1180093 NA non-coding downstream 11174 46347560 ~ 46348851 (+)
G1180133 NA non-coding downstream 54093 46390479 ~ 46442094 (+)
G1180161 NA non-coding downstream 90534 46426920 ~ 46431222 (+)
G1180193 NA non-coding downstream 135532 46471918 ~ 46476079 (+)
G1180200 NA non-coding downstream 161084 46497470 ~ 46497708 (+)
G1180047 NA other upstream 29150 46239144 ~ 46273601 (+)
LOC118936304 LOC106601427 other upstream 126189 46173911 ~ 46176562 (+)
LOC110485192 LOC106601391 other upstream 772623 45529398 ~ 45554103 (+)
G1179362 NA other upstream 839808 45462588 ~ 45462943 (+)
G1179156 NA other upstream 989718 45312330 ~ 45313033 (+)
G1181472 NA other downstream 1037777 47374163 ~ 47374477 (+)
tmem100a LOC106606948 other downstream 1131730 47468012 ~ 47471205 (+)
G1181636 NA other downstream 1212893 47549279 ~ 47549548 (+)
G1181955 NA other downstream 1405975 47742361 ~ 47743064 (+)
G1182153 NA other downstream 1783227 48119613 ~ 48122575 (+)

Expression


Co-expression Network