LOC110486578 (st6galnac2)


Basic Information

Item Value
gene id LOC110486578
gene name st6galnac2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46422708 ~ 46428266 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558288.2
tcctgtgtctgcatctgggtctcgccatGCGTCGTTATATTGACagctaaaaataaaaacagaacagACACAACACAATCATACTCTGCGGGACAGATCatagtataaaaataaaaaacagaacagAGACAACACAATCATACTCTGCGGGACAGATCATAGTCTGACCGAAAAAAGACTCAGAGGAAAATTGTTTTGCTCCTGTTGTGCACAACACGTAGAGCATTAAGGATATGAACCTTGTTCACCCAACTGACTCACCTGGGTTTTAGAGCAGTAAATGACTTGTAACAGAAAGTTAAACTCAAACTTTTTTTATATACTCAAACAGCACGAGATATTATGTTCTCTAGTTGAGAAATATGACGATTTCTTGGAGGAAGTGTGTCTTCCTAGTGGGGGCTTTATGTGTAAGTGTTACTATAACCATGATTATGTATGGACAATACTATGACCTGGACTTCTTCCACGACAGACTTCCGAACAGTCAAGACACAGAGTTTGATAGCATTTGGACTTGCGATGAAGAGCTTTGGGACAACACCACAGCAACTGGGGAAGAGAAGCTGGAAGGTTTGTGTCCTCTGAGAAAAGCAGTGAAGAAGGACGACTTCCTCAGACTACGCTTTAACTTTAAAGTGCCTGTGCTGCAGTGGGCTGGGAGCTTCAGCCATTCAGAGTGGGGGCGATTGGAGACGTATATTCCCCCCTACGGCTGGAAAGGCCTGCCCCAGGACATTGTGAGATCCACTTTGGCCCTGCTCAACGACTCGTCCAGCAGCCGCCTGTTTGAGCGCAGGTGGCCTGATCAGTGTGTCCGCTGTGCTGTGGTGGGAAATGGCGGCATCCTTCGAGGCTCCAAACAAGGCAGGGCCATCGACAGTCACCACTTTGTCTTCAGGGTCAATGGGGCAATCACCAAGCACTTTGAGGAGGACGTGGGCACAAAGACATCTTTCTATGGGTTCACCACAAATACTATGAAGAATTCCCTAAATTCTTACAGAAAAGATGGCTTCACCAAGGTCCCACGGGGACAGAGAGTCCGATATATCTTCATTCCGTCCAACGAACGTGACTATGTGATGATGTCAGCTGCTATCCAGGGTCTCACTGTCACCTCCGGTCATGACAAGGGGGACTGGCCCTCTCGATACTTTGGATTTAAGCCACCAGTTAAGCACTTTAAAATGCTTCATCCAGATTTTGTTACATATGTAACGCAAAGGTTTCTGAAGTCTCCCCTGCTGAAGTACAGTCAGCTCTACATGCCCAGCACTGGTGCTCTGATGCTTCTGACCGCCCTGCACATGTGTGACCAGGTGTCTGCCTATGGTTTCATCACAAAAAACTTTGCAGACTTCTCTGACCACTACTATGATGCTGTGATGCTGCCCCTGCGCTTCTATGCCAACCACGACATGCAGATGGAGAGCTGGCTGTGGGAGGTACTGCATGCACGAAAAGTAATGTCACTGTACAAGAGGACAAAAGTAAAATGATGGACACTCAATTGTATTTTCATGTGAAAAGCCTTCCTTGAACTGCTGTTAACTCCTATGTTTGCCATGGAGGTAGTCCCTCTGAAGGAGTGGCTGCTGGAGTTGTGTAGCGTCCTTTGTCATTAGTCTCACAGCAACATTAAAGGCCTTTGACGGTGTAAAGCCAAGCTCAGGTGTTCCAAGCGTCTGTTTGTGGGATCAGGCCTTCTTTGATCATTTGAACAACCCTTATCTTCTCTGTGAAGGCAGGTGCAGGGAGCCGAGACTATAGTCTCTCGGTCATTCCTCTTTCTCATTTTCCTGCAATGCCTATTCTCATTAGAAACTGTCGGGTATGACTGGGACTTACAATGAAAGCATTCACATTATGAAGCCAGCAGTCCATTCATGCCAACCTTTTTGTAAATGAGTTTGACTTGCAGCCTCTTTGTCCAGTGCCTATCCAATGATAGGTTACTCCAAGCCACAATAAAGACAAAGTGACACATTCTTGTGTCAATCTTTGATCTGCTGAGCTATTGTTACATAATACATGGATCTCTAGTGTCTGTTATGAATGAAATCCTGATAATAGACATGTGAATGTTGCTAGATTATGTAATTCACTGTAAAAGCAAGATAATGACCACTTGTAACAAATTGTACACATTTCTGGGGAAAGCTGTGTTATGGCCATTTTCTGCCACTGACAGCTGTGCAAAATGTTATGGGATGTTGTGTGCAATTGTTTTCTTATTCTATTAAAGCTAGAGTtcttaattgaaacaatagcaAAGCGGCCAGCCGGCCTATATTTTGGTAAAAAGCAAATTCATAGAGCTATGGATGGAAGGACTGACCAgccatg

Function

symbol description
st6galnac2 Predicted to enable sialyltransferase activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Orthologous to human ST6GALNAC2 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2).

NR:

description
alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2-like

GO: NA

KEGG:

id description
K06616 SIAT7B, ST6GalNAc II; alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase (sialyltransferase 7B)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558288.2 True 2349 mRNA 0.45 9 46422708 46428266

Neighbor

gene id symbol gene type direction distance location
LOC110486575 LOC106596896 coding downstream 327 46336544 ~ 46422381 (-)
LOC118938311 LOC106601426 coding downstream 168516 46245465 ~ 46254192 (-)
LOC110486569 LOC106601418 coding downstream 186781 46230384 ~ 46235927 (-)
recql5 LOC106601412 coding downstream 193753 46212178 ~ 46228955 (-)
LOC110486567 LOC106606966 coding downstream 210963 46201026 ~ 46211745 (-)
LOC110486579 NA coding upstream 12730 46440996 ~ 46468343 (-)
LOC110486581 jmjd6 coding upstream 44228 46472494 ~ 46482863 (-)
LOC110486583 srsf2 coding upstream 56505 46484771 ~ 46487882 (-)
LOC110486586 ubald2 coding upstream 82319 46510585 ~ 46535713 (-)
LOC118938312 NA coding upstream 125686 46553952 ~ 46561085 (-)
G1180499 NA non-coding downstream 88165 46331726 ~ 46334543 (-)
G1180506 NA non-coding downstream 120006 46302481 ~ 46302702 (-)
G1180504 NA non-coding downstream 124441 46298028 ~ 46298267 (-)
G1180493 NA non-coding downstream 140906 46281578 ~ 46281802 (-)
G1180488 LOC106606977 non-coding downstream 150459 46269902 ~ 46272249 (-)
G1180578 NA non-coding upstream 9656 46437922 ~ 46443184 (-)
G1180582 NA non-coding upstream 14989 46443255 ~ 46446313 (-)
G1180598 LOC106606957 non-coding upstream 65914 46494180 ~ 46494722 (-)
G1180599 NA non-coding upstream 69479 46497745 ~ 46497976 (-)
G1180601 LOC106606957 non-coding upstream 72295 46500561 ~ 46500790 (-)
G1179621 LOC106607015 other downstream 890046 45531858 ~ 45532662 (-)
G1179619 LOC106601391 other downstream 892594 45529436 ~ 45530114 (-)
zgc:171844 LOC106607059 other downstream 1229403 45182660 ~ 45193315 (-)
il-8 il-8 other downstream 1335578 45085269 ~ 45087130 (-)
G1178996 NA other downstream 1370684 45051576 ~ 45052024 (-)
LOC110486590 LOC105022923 other upstream 455162 46827752 ~ 46915018 (-)
LOC110486593 LOC106606954 other upstream 1004530 47432406 ~ 47433949 (-)
LOC110486594 LOC106601485 other upstream 1034015 47460436 ~ 47466735 (-)
LOC110486618 LOC106606909 other upstream 1574765 47999581 ~ 48015951 (-)

Expression


Co-expression Network