LOC110486581 (jmjd6)


Basic Information

Item Value
gene id LOC110486581
gene name jmjd6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46472494 ~ 46482863 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558295.2
CACCccagtctagctagctagctcaagtGCCTAAATTCGCAGGAATGAACCATAAAAGTAAGAAGAGGATCAAAGAGGCGAAGCGGAGCGCCAGACCTGAGCTGAAGGACTCTTCAGACTGGACGAAACATGACTATTGCGAGACTTTCGATGTGTCACACCGCTCAGTGAAGGACAATGTTGAGCGTGTGGACACCCTGCGTCTCAGCGCAGAGGAGTTCATCCAGCGCTTCGAGAGGCCCTACAAACCTGTGGTGCTGCTCAACTGTCAGGACACCTGGCCCGCCCGCGAAAAGTGGACCATGGAGCGCCTCAAACGTAAGTACCGCAACCAGAAGTTCAAGTGTGGTGAGGACAACGATGGTTACTCTGTGAAGATGAAGATGAAGTACTACGTGGAGTACCTGGAGTCCACACAGGACGACAGCCCACTCTATATTTTCGACAGCAGCTACGGCGAGCACGCCAAGCGCCGTAAACTGCTGGAGGACTACCAGGTGCCAGTTTACTTTAGGGACGACCTCTTCCAGTTCGCCGGGGAGAAGCGCCGGCCTCCTTACAGATGGTTTGTAATGGGTCCTGCCCGCTCTGGCACTGGCATCCACATTGACCCGCTGGGTACGAGTGCCTGGAATGCCCTGGTGCAGGGGCACAAGCGCTGGTGCTTGTTCCCCACCCACACGCCCCGGGAGCTGATCAAGGTGACCCGGGACGACGGGGGCAACCAGCAGGACGAGGCCATCACCTGGTTTAACGTGGTGTACCCACGCACCCAGCAGCCAACATGGCCTGCTGAGTTCAGACCCCTGGAGATTCTGCAGGGACCAGGGGAGACCGTGTTTGTTCCTGGAGGCTGGTGGCATGTGGTTCTCAACATGGACACCACCATCGCTATCACTCAGAACTTTGCCAGCACCACCAACTTCCCCATCGTGTGGCATAAAACTGTGCGGGGCCGGCCCAAACTATCAAGGAAGTGGTATCGTATCCTGAAGCAGGAGAGGCCAGACATGGCTACCCTGGCAGACAAAGTGGACCTCCAGGAATCGACTGGCATCGCCTCGGACAGCTCCAGtgactcttcctcctcctcttcctccagctcCTCTGACTCAGACTCAGAGGCTGAGTCGGGCTCGGAGGGGGACGCCATGTCTCACAGGcggaagaagaggaagacgtgCGGTATGATATCCAACGGAGACAGCAGCACCAAGGACGACTGTGTCAGCAAAGAGCGCAGCTCCTCCCGGTGACCCCCTCGCTCTGCCCCGCCTCGCCAAAAGGCCACACCCAGGGGGACTTTTGCATGAAGAGCAGCCAATTTGTTTGTTTTCATTGGTGTGTCTCCAAAGGAGAGTCTGGTGGCCCTCTGTCAGTCTGTTGGATAGATAAGAGGGTCAGCCTACTCCTAGGCTGTGATAAAGGAGATTCCCCCTGAGGCGTGGACCTGCTGGAGGTTTATCTGCCACCGCTCAGCTTCTAGTCAAATGTTAATCTATATTGCTGTTGCTTGTGGGGTGTGGGAAGAGCAGTATTTCAGTGCGAGGGAGGGGTGTTGACCTTTGGAGAGAGGTGGGCTGTTGCCTTGTTGTACACCAGGTACTGGGGATGAGGCAGGGAGCCGGCTGGCCTGTCTCCTCTACAGTGCCATGGTCTTATGTTGCTCAGTGGGGAAAAGTTTTCTATTCACAGTGAGATGATGGCTGGATGGATAGATAAGTGTGCTTTGGATTGACTTCACTTTGCAGTACATGGGATGCCAGTTGAGTTTTATCATGGCAGAGTTGACCATCTTTAGATATTAAAGTGTACTGTGAGTTTTGTAAGTTGATAATGTATGACAGGGTAAGGGTGGAGGGAAATGCTGCTGCCTTAGTCTGCTAAAAAGCCActgatttatattttttatttaacatttatgcTTTCATCCTCTGGGCTTCTTTTGCTAGTAACAGTTGAACTGATATGCATATGTATTGCAatcaaaacagttcattcagaatCAGTTAATTCAATTAAATGGTTAGCAAATGAACAGTCCACAATCCAGGCAAGACCATTTAACAGATCTAAAAAGCAATGAAAAGATTGCATAGTGGCATTTCTCTTTCATATCAGATGTATCTGCTGTTGACATCTGTAGTGCAGACTAATGCACACATGTCTAGTGAAACAACAGCTTTTTCAAGACTTAGCCCAAGTCATCCAGCAACAACTGTAAAGGCCAAGGGATCCCCACCTGACTTAGATTTAGCCGGTTCAGCTTGACATTCAAAAGCTTTACCTTTTAGGAGGAAATTGCCTATACTACACTCCCTTAGCTCCAGGTTGGGTAAGATGAATCACTCTCAGGTGCCACAAATGAATGTTGGGCTATCAACAACAAAATTCCACCCaagaaacaacaacaatattGCCTGGTTATGTAATGTTTCTATTACtttaattattatatatattttttttaacctttatttagctaggcaagtcggttaaaaacaaactcttatttacaatgacggcctaccctggccaaacccggacgatgctgggccaattgttcgccgccctatgggactcccaatcatggccagatgtgatacagcctggatacgaatcagggactgtagtgatgcctcttgcactgagatgcagtgccttagaccgctgcaccactcgggattAATTTAATTACATATGGGTTACTCACACAATTTTCAAATTTGTATGATAACAATTGTTATTGTCTCTCGTAAAAGTGAGCCCGTTGCTGCTATATTAATCAACATTTTAAGATGAATGAAATCAAACTATTCAAATAATTTGACATTACACGGCTATACTGTAGATCAGGGGCgtcaattgaaaaaaaatattCCGATCTAAATTGACATGCCTAAAACCAAATCGAAACTGCGTAGAAATTATAGTGGACATAATTTATAGTCTCTAAACTCTGTCCAGCTTGTTAACAGTCATTGACATGAAAGCTAGACCGTTTGGGCACATAGAAAATTTGATGGATAGAGAActatttttttgccaattttgcCAGCAAGGAATATAACCAATACAAGTGGACCTCAGTGAAGACAGAATGTGGCCCTTTGGGGCAAAATGAGTATAACACCCCTGTTGTAGGTGCTGGTTTCCCAGACCCAAATCATGCCTATTCCTGGTCCAAAAAGCACTTTCAGAGAAGTCAATCATGGATGCGTTTTAGTCCAAGATTAGAATTAACCTCTTTCCAGGAAAGGAGCCCTAGGTGTTTGATCTTGTGTTCTCATTCCGAGACCCCATTTTATATTCTCCATCACATACAGAAGGGGGCACCAATGCCAGAGTTCTCACACTAGCTTGGCACTAGTGTGTGGGGGTTACAGTCCAGAAGATACAACAGTTGTGTTAAAAGTAGAAATGAGGGCTGGCACAGGGAAAAGTTTAAACATATTGTAGGCCTTGTAGTTCCACATCTTGATCTTATTTCTCTGTGTAGTACAGCTAAGGGGGTTTGTGAAATGTTGCAAATACATTTTATGTGAGGGGATAGGTAGATATTTTGGACAGTCTAAATTCATGGTTCTTTCCATGTGGCTTCTAGGTTATGTGGCATATGCTGCTCTACAATGATTCAACTGCTTTGTATTTCGTTAGTGTAAATTCAAACAAAAGCAACTAGCTAATACATTACTGTTATTCAGCAAATACAAGTTAATGGTTTGAATGCAGATTCTGCGTGTATAACTTTGTTCTGTGGGGTTAACATGGAGTCAAGTGAATACTGTTTTTTTGTGCTTTAAAAATGTGGCTTTGTCATCTAAAATGATTGAAAGTACTTTGAAATATGTGAATTGCTGTATGTCTGTGCAGTAGGTGTTTTCCACTGTCTTTAGACAAAAGTGCCTATAAGCACCAATTGATACTGTCATTGGCCTGCAGATGAGAGGTTGTGTTGCTACTTGTGGTCAATGCGTCTGGTGTTTGCGCTGTTTTTAACCCATTAGGTGCTCATGTCAAGCATTTAGCACTATTACGGTCCCTGGGGTCGGTCACATAGTGCCTTGGATCCGATGAGGGAATGGTGAGAACCAGGAGCCTATGTGGGTACAACTCAGTGGTCTAATGTGGCTTCCTTTGGTCAACCTCTTCAGCCGCACTGATCCAAATCTCCAGGACTGGAAAAAGGAAGCCCTCTATTAGGGTTCCGTCAAATTGCTTTCACCTGTCCTGTCTGGCCAGATCAGGGCTTTCACCTGTCCTGTCTGGCCAGATCAGGGCTTTCACTTGTCCTGTCTGGCCAGATCAGGGCTTCCACCTGTCCTGTCTGGCCAGATCAGGGCTTTCACCTGTCCTGTCTGGCCAGATCAGGGCTTTCACCTGTCCTTTCTGGCCAGATCAGGGCTTTCACCTGTCCTGTCTGGCCAGATCAGGGCTttcacctgtcctgtctggacaGATCAGGGCTTTTACCTGTCCTGTCTGGCCAGATCAGGGCTTTCACCTGTCCTGTCTGGCCAGATCAGGGCTTTTACCTGTCCTGTCGGGCCAGATCAGGGCTTTCACCTGTCCTGTCTGGCCAGATCAGGGCAGATAAAGGAGAATGGTGAGAGGAAGCCATTTTAAGATATTTAGATGTACACCCAGACATACCTTGACGCTAACCAGATCAAAGTTAATAAATGATTGATGAGTTAATAAGTAATTTTTTCATGCA

Function

symbol description
jmjd6 Predicted to enable 2-oxoglutarate-dependent dioxygenase activity and single-stranded RNA binding activity. Acts upstream of or within phagocytosis. Predicted to be located in cytoplasm; nucleolus; and nucleoplasm. Is expressed in brain; hatching gland; heart; pronephros; and somite. Orthologous to human JMJD6 (jumonji domain containing 6, arginine demethylase and lysine hydroxylase).

NR:

description
bifunctional arginine demethylase and lysyl-hydroxylase JMJD6-like

GO:

id name namespace
GO:0006909 phagocytosis biological_process

KEGG:

id description
K11323 JMJD6; histone arginine demethylase JMJD6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558295.2 True 4717 mRNA 0.47 6 46472494 46482863

Neighbor

gene id symbol gene type direction distance location
LOC110486579 NA coding downstream 4151 46440996 ~ 46468343 (-)
LOC110486578 st6galnac2 coding downstream 44228 46422708 ~ 46428266 (-)
LOC110486575 LOC106596896 coding downstream 50113 46336544 ~ 46422381 (-)
LOC118938311 LOC106601426 coding downstream 218302 46245465 ~ 46254192 (-)
LOC110486569 LOC106601418 coding downstream 236567 46230384 ~ 46235927 (-)
LOC110486583 srsf2 coding upstream 1908 46484771 ~ 46487882 (-)
LOC110486586 ubald2 coding upstream 27722 46510585 ~ 46535713 (-)
LOC118938312 NA coding upstream 71089 46553952 ~ 46561085 (-)
LOC110486590 LOC105022923 coding upstream 344889 46827752 ~ 46915018 (-)
LOC110485195 LOC102192139 coding upstream 446640 46929363 ~ 47345934 (-)
G1180582 NA non-coding downstream 26181 46443255 ~ 46446313 (-)
G1180578 NA non-coding downstream 29310 46437922 ~ 46443184 (-)
G1180499 NA non-coding downstream 137951 46331726 ~ 46334543 (-)
G1180506 NA non-coding downstream 169792 46302481 ~ 46302702 (-)
G1180504 NA non-coding downstream 174227 46298028 ~ 46298267 (-)
G1180598 LOC106606957 non-coding upstream 11317 46494180 ~ 46494722 (-)
G1180599 NA non-coding upstream 14882 46497745 ~ 46497976 (-)
G1180601 LOC106606957 non-coding upstream 17698 46500561 ~ 46500790 (-)
G1180602 NA non-coding upstream 20701 46503564 ~ 46504071 (-)
G1180603 NA non-coding upstream 21225 46504088 ~ 46504304 (-)
G1179621 LOC106607015 other downstream 939832 45531858 ~ 45532662 (-)
G1179619 LOC106601391 other downstream 942380 45529436 ~ 45530114 (-)
zgc:171844 LOC106607059 other downstream 1279189 45182660 ~ 45193315 (-)
il-8 il-8 other downstream 1385364 45085269 ~ 45087130 (-)
G1178996 NA other downstream 1420470 45051576 ~ 45052024 (-)
LOC110486593 LOC106606954 other upstream 949933 47432406 ~ 47433949 (-)
LOC110486594 LOC106601485 other upstream 979418 47460436 ~ 47466735 (-)
LOC110486618 LOC106606909 other upstream 1520168 47999581 ~ 48015951 (-)

Expression


Co-expression Network