LOC110486586 (ubald2)


Basic Information

Item Value
gene id LOC110486586
gene name ubald2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46510585 ~ 46535713 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558299.2
ATCCAATCAGCAGTTGTGCTTGGCTTTGTTGTTGGTGATGACATGGACATATTTGTTGTTACTGGAAGGCGAGGGTAGAGCGTGGTAAGGAGGGTCAGGTTTGAGCGATTGATTTCGACATTTCGAGGCTTTGTTTTCCTAGGTTTCAACGATAAAATAACTGAGGTGGGGTGAACAGCGGTTATGTCGGTGAATATGGACGAACTCAGGCATCAAGTGATGATCAACCAGTTTGTTTTGACTGCTGGTTGTGCTGCTGATCAAGCGAAGCAGCTTCTTCAAGCGGCTCACTGGCAATTCGAGacAGCCTTAAGCTCCTTTTTCCAGGAGGCCAACATCCCCAGTCACCACCACCAGATGATGTGCACTCCAAGGAACACCCCAGCCACGCCGCCTAACTTCCCCGACACCATCACCATGTTCTCCAAGCTGAGGGCGTCAGACTGCTCGGGGAGCTCCGGAGGCGGAGGTCCCACCCAGGTGTCCATGGCCtgctcccccccctcctccacagtTGGCTTCGGATCCTTCTGGGCCTCATCACCCCCCAAACACCAGCCCGTCTGGCTGCCCCCCTCCTCGCCCACAGGCCACCACatgcaccaccaccactaccagcaccaccaccacatgcaCCAGACCCCCATGTGGCCCCCTGCGTCCCAGCCCGGCAGTGCCCAGCAGACCCCTGTTGTATCGGTCCTGCATGGCCAGAGATGAGACTCTACCCAGGTGTGGGAAGGAGGGGGCTGGGGAGGATAGGGTGGGGCTGGGCTATGTGCAGCCTAATGAATCTACTAGGGGGGTTGGGTGTCAGGATTAAAGGGTCTTGTTGGCCAAGGGGAAAAGACACGCTACTGTTGttttccttcctttctttctgttTTTCTAAAATGACTATGAACAATGTCTTCTTTGGAGTACAtcggtttcctctctctctctctctctctcttcatcataaCTCATCAAAGCCTGGGAAGAACTGGGGGAGAACCACTAATAACAATATGAGGAAGTGGAATAACGAAGGGGGTGGagtctctgaccccccccccccaaaggacTCTGGGAAATGCAGTTTTCTTCGTCAATGCAAGTCGAGCCCTGGACCCAGCAGAGCACTTACTTAGGATAGGAGCCATGTGATCTGCTAAAGTGCTTGATCATTGGTTGTTTTTCAAAACTCTTCTCTCCCTTGGGGTTCAATAACGCTCCAGCGATGTGACCAGATTTCACAATAACCAGCAGACAAAAACAAAATGGGACTGCAACGCAAATGATGATGGTTTTGTGTTCTCGGCTGATCTCATGGCccagaaaaaacatgttttcaatatTGTTTGTGGAATGGATATCTGTATAGTACAGATCATGGAGAAACACTGTAGCCATTTTGTCAAGTTTCATGTAGCCATGTACCTCTTTTTAAAATGTCTATTTTGTAAGTACTATGTAGCTTAGTGAAACCTGACTCAGTGGCTCCACTGCATGCTGTTGTGTCTGAGAAGTGGGCTCTTCAGTATGTGTGGACTCAAAGCTTTGGTTTAAAGTGTCTGAAAGCTGACCTTCACATCAGAGGTGTTTTAAGGAGACGTGTAAAGAAATGTTAATACTGTAATTCAGTTTGTGTTGAGACACAGCAAAGTATGCAATCATTTGATGGAAGCCTGAAGCCAGTTTAAAGGCTGATGCATTTTTATCATTGTTTTTGGGAACATTTTCTACCTATGGATGTCAAAGGTcttaaggcactacatctcagttctagaggcgtcactacagaccctgatttgattccaggctgtatcacaaccggccgtgattgggagtcccatagggtggcgcacaattggcccagcgtcgtccgcgttagggtttggccggggtaggtcgtcattgtaaataagaatttgttcttaactggcttgcctagtcaACTTTCTTTTGACTGATAATGTAAACTGGTTTTCAGTGACAATTATGGAAACATCTTCTGAACTCCATTGTAAATAAAGGCTCAGCAGAAACAAAGTGCAAaaacattgaactctgtaacCTGTCTGGGGACGAGATTGAGATCTCAGTTACCTGTCAACACTGAACTTAATCTGGTTTGCAAATGTTTTGACTAACATAGATGGGTGTGAGCCATCAGTAGGCTACCTCTTCAGGTTTCAATGGGGAGTAGAGGCCAACTCAGTGATTTACTACACAACCTCTAGCAGAAGATCAACTGGTCCTACCTCTGGTTAAATGGGAGAGGCCGAATGTATTCCCTGCAGAATCAGTCGGTTTCAATGGGTCAGATTAGCAGAATCTCTACTAGTGCTCAAAACGTGTGTAATTCCCTCCGTTAGAATAGTGGCTGATTGACTGATGATGAATTGAGTGTCTTGTCAACTATAGAATTATGAATTTAGTACGGGTTGGGTGCAAATATTGACTAAATGATTGTTCAGGCAATGTTTACATATGAGATTCAGTGTACTGATGAACAATGCTTCATAACCCAGAGTCTTACTTATAGGTGAGCTCTTCATACAACAGCCCATGTCAGAACATTTGCAAATCTATCAATGGTGACAGATGGAAAGGTAGCCATTTTCACCATCATTCTCATTATAATTATCACAATAAAGAGGGAATAGGGAGGTCTGAACATGTTGCAGTTGTATACAGAGGGTACTTTATCTGAAATAATGTCACATTCATTCATGCCCTCACTAAATGATGCTTTAACATTATGCCTGCCTGCCACGTCTTCACTCAGACAATCATATTCACACGATCCCTCTGGTTGAATACATGTCAAATCACATTTGTCAAGCTGTGACCTTTGTGAGGATGATTTTATAATGTACAATATGGGCAGATGCCACCTGGCCAATGTGGACCCTTGTCAATGTCACCAGAAAGAAGGGACACTGCTCCACTGTGCTGCCATGTGGTCTGTTCTGGTTCTAAATCCATGGATCTTTTCAGATGGACATTAGAACCTCAACGGTGGTTCCTCTTGGGGTGTTCATAGCACCACCTCATTCATTAACTCATGTGTTCTATTAAGGGGAACGTTTGTTGTCAACTGCATGAGTTTTGGTTGGTGATTTTCCAGTTCTGTGTTTTTAACAAGGTGGGAGTGGAGGGTGGTCCCATAATGAGTGTTTCCTGCTGTGTGGTTTACtggctcctcctcctcagtattgTTGTGGTAACTAACACACCCAGACACAGTAGTGTTGGGGGATTATGGTTCCTGTGGTGTGGTGACCCGGTCTCCATTCTCCTCCATCAACAGTAGACAGTTTGGTCCCCCGTGATATCTGTACAAACTGGGTGTTATGAAATGTTCGAAACGTCATGTTCACCCATACAAGATGTGCAGAATGCCTGATGGAAATCCGAAAACAAGTCAAACAAGAACTTCTCATGGACCCTCATTTACATCTCTCTAATCCGACTTTTTATAGAGATATTTCTCTCCTGTACTGTGTTTATTTCCCCTGTTGAAATGTGTATTTATATGTTTAATAAAATAAGGTATGATCTGCTAAGTG
>TU1346367
GCGAGGGTAGAGCGTGGTAAGGAGGGTCAGGTTTGAGCGATTGATTTCGACATTTCGAGGCTTTGTTTTCCTAGGTTTCAACGATAAAATAACTGAGGTGGGGTGAACAGCGGTTATGTCGGTGAATATGGACGAACTCAGGCATCAAGTGATGATCAACCAGTTTGTTTTGACTGCTGGTTGTGCTGCTGATCAAGCGAAGCAGCTTCTTCAAGCGGCTCACTGGCAATTCGAGacAGCCTTAAGCTCCTTTTTCCAGGAGGCCAACATCCCCAGTCACCACCACCAGATGATGTGCACTCCAAGGAACACCCCAGCCACGCCGCCTAACTTCCCCGACACCATCACCATGTTCTCCAAGCTGAGGGCGTCAGACTGCTCGGGGAGCTCCGGAGGCGGAGGTCCCACCCAGGTGTCCATGGCCtgctcccccccctcctccacagtTGGCTTCGGATCCTTCTGGGCCTCATCACCCCCCAAACACCAGCCCGTCTGGCTGCCCCCCTCCTCGCCCACAGGCCACCACatgcaccaccaccactaccagcaccaccaccacatgcaCCAGACCCCCATGTGGCCCCCTGCGTCCCAGCCCGGCAGTGCCCAGCAGA

Function

symbol description
ubald2 Is expressed in axial mesoderm; central nervous system; and somite. Orthologous to human UBALD2 (UBA like domain containing 2).

NR:

description
UBA-like domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558299.2 False 3557 mRNA 0.46 3 46510585 46535713
TU1346367 True 617 TUCP 0.58 3 46513457 46535645

Neighbor

gene id symbol gene type direction distance location
LOC110486583 srsf2 coding downstream 22703 46484771 ~ 46487882 (-)
LOC110486581 jmjd6 coding downstream 27722 46472494 ~ 46482863 (-)
LOC110486579 NA coding downstream 42242 46440996 ~ 46468343 (-)
LOC110486578 st6galnac2 coding downstream 82319 46422708 ~ 46428266 (-)
LOC110486575 LOC106596896 coding downstream 88204 46336544 ~ 46422381 (-)
LOC118938312 NA coding upstream 18239 46553952 ~ 46561085 (-)
LOC110486590 LOC105022923 coding upstream 292039 46827752 ~ 46915018 (-)
LOC110485195 LOC102192139 coding upstream 393790 46929363 ~ 47345934 (-)
LOC110486593 LOC106606954 coding upstream 896693 47432406 ~ 47433949 (-)
LOC110486594 LOC106601485 coding upstream 924723 47460436 ~ 47466735 (-)
G1180607 NA non-coding downstream 341 46508200 ~ 46510244 (-)
G1180606 NA non-coding downstream 2548 46507246 ~ 46508037 (-)
G1180605 NA non-coding downstream 4076 46506077 ~ 46506509 (-)
G1180603 NA non-coding downstream 6281 46504088 ~ 46504304 (-)
G1180602 NA non-coding downstream 6514 46503564 ~ 46504071 (-)
G1180621 NA non-coding upstream 6501 46542214 ~ 46542414 (-)
G1180622 LOC106606962 non-coding upstream 7407 46543120 ~ 46544068 (-)
G1180645 NA non-coding upstream 46049 46581762 ~ 46600079 (-)
G1180729 NA non-coding upstream 141847 46677560 ~ 46744083 (-)
G1181081 NA non-coding upstream 274711 46810424 ~ 46906931 (-)
G1179621 LOC106607015 other downstream 977923 45531858 ~ 45532662 (-)
G1179619 LOC106601391 other downstream 980471 45529436 ~ 45530114 (-)
zgc:171844 LOC106607059 other downstream 1317280 45182660 ~ 45193315 (-)
il-8 il-8 other downstream 1423455 45085269 ~ 45087130 (-)
G1178996 NA other downstream 1458561 45051576 ~ 45052024 (-)
LOC110486618 LOC106606909 other upstream 1467318 47999581 ~ 48015951 (-)
G1183013 NA other upstream 1489388 48025101 ~ 48025776 (-)

Expression


Co-expression Network