foxj1a (LOC106601528)


Basic Information

Item Value
gene id foxj1a
gene name LOC106601528
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46542192 ~ 46547913 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558300.2
TTAAACTGCCCCCGGAGAGATCCTTAGCCGCTGCCACTGTTATAAAGACCTGCGTTTGAGACGTTGAATTGAACAAGCGCGCATCAGAGCGCCAAAGACATCTCGAGGtattttttcatacattttcaacAGGTGCAAATCCTCAAGGCTAAAGTGAGATTAATAATTTATCAATTGGCCATTTGGATTGTAAAGTATTTTCTCAGCATTATATCAGATCAAGGCTGTTGTCTGGTGGTATAGGGGGGAGCTTTAACCATCGGAGCGGAGGGAGGACCATGCTGTCTCTAAGCTGTGCAGACCCCTGGCCCGAGGGCTCGGTGGGGCTGGAGGAGGAAGTGGTGACTGCCGCTGCTCATTCTGAGGAGCTGGACCTGGACGACAGCTCAGCCTCAGCAGGCTCCAGCAGCACTGGGGGCTCTGACAACCTGGATGACAGCCTGACCAGCCTGCAGTGGCTGCAGGAGTTCTCTATTCTCAATGCCAATGGGCCTCAACAGGCTACTCTCTCCACTCACCACCAGCCTCACTTCTTCGGCCATCAGCAGCTGGGCTCTGAGGCTCCCGCTTCCCCTCTGGCTGGTGACCCTGCATCCATAGGGATGCCCCTCACCCCAGGCAAGCCCACAGCAGCAGCCTATTGTAGGATGCAGTCCCTGTCAGCCCTCCCTAGCCTGGTGTCCCATGGTCACTGCCCCGATGAGGTGGACTACAAGACAAACCCTCATATCAAACCACCTTACTCCTACGCCACACTCATCTGTATGGCCATGCAGGCCAGCAAGAAGACCAAGATCCCCCTCTCCTGCATCTACAAGTGGATCACTGACAACTTCTGCTACTTCCGCCATGCTGACCCCACCTGGCAGAACTCCATCCGGCACAACCTGTCTCTGAACAAGTGTTTCATCAAGGTTCCACGGCAGAAGGATGAGCCAGGGAAGGGGGGCTTCTGGAAGATCGATCCCCAGTACGCAGAGCGCCTCCTCAACGGGGCCTACAAGAAGAGGGGGGTGCCCCCTGTCCAGATCAACCCTGCCTTGCAGAACAGGCTTAGGGCCAACCCCCAACCCCTGCCCAGGGGCCTCTGCAACCCCACAGGCAGCCAGAGTGGGCTGTGTGTCAATCCAGAGGCTCAGCAGCTCCTCAGAGAGTTTGAAGAGGCCACTGGAGCCGATCAGAACTGGGACCCCTGTCTGGCTGAAGGCACCATGCTGGGGGCATGGCCCATGAGAAAGGGAGGACCTGGACACAAGAGGAAACATACACTGGGCTCCAGGACTGCCATGGTCAAAGTCCCCTGGCGCTCCAGCTCTCCTTTACTGTCTGTGGAGGAGTATAGGGAACTGGGCTCCCTGAAGGGGAACTTTGACTGGGACGCCCTCCTGGATTCTGCGCTGAGCGGGGAGCTGAGTCTGGACGGAGGGGGTCCACTGAGCCCCATCCCCCAGGAGGAGGACCTGATGGTGCGGGGGACCCACATCTGCCCCCTGGAGGCCCCCGCAGGGACAGCAGACAGCAGCCACGTGCTGGCGGAGACCCAGAGGAGCAGTGGAGCAGACTTTGAGGAGACGTTCCTGGCCACAGCATTCCTGCAGAGCCCCTGGccagaggaagaggagcagggaTCTACCAACTTCCTGTGCAGCTCCACAGTCAACCTGGAGCAGCTCTTTGACCTGGGAGATTCCCTTGGAGGGGACCTCAGCAGTAAGATAGAGTATCTTCTCTAAAGACATGTTCTCCAATTCTTTGGCCTTCAAGACTCGTTGACTATACTGTGATGATGACACTTCTAGATTATTGTTTAAAAAGAGAGGCACCACATGAACTAAATGGACCTTTTACACATACACATTTTTAAGATTTCTAgattatgttttttgaaattgGTACAATAATGGATGACATCATTAATACCTACAGAGCAAAAATGCCACAATGAACTGCAGTATTCTAAATGATTACTGGACAAAAACTATATCAAACCTACTGTTGGGACCATGACATTATCAATAAGACTTTGCTCACAGAGAAACAAAATATTCCTGTCTGAGGACAGGAAAACCACCAATATGTCTTTGTTTACATTCTGAATATATATGTGGTATTGAATGGATTGCAGGTTGACATGGATAGAGGAATTGTCATGCAGGCACAAGGCGAGCAACAGAACATTGGAATCGACATTTTAgaaatgtacatttattttgcattagATGAAATTACAAAGTAAGACTTTACAGTGACTGTACTCTTTGAAAGTTATGGACAGTTTCGAGATGCAAGGCCAATAGCAAATGATGAGTTGAGGTGTTGTACCTGACAGTGATGCAACGTTTTAGCTGCTTAAGAATAGTTGGTTTAGCATGCTGAATATTTCATAAAGGTTTAGATGAATCCACCTCACAGGGAATACTATTATTTGTTGTGAAGATCTCTGGAATGTATGCATCAGACTTCAGGAATTTCGGTCCTGTACTGAATTTTCTACTGAAATGCTGAATGTCTGACTTTTAACGCTCTGTGGATGCATTTGGATGAAATTCTGAAAATAGTGTCTATTTAATATCAATATACAATATCTGTAACTGAAGTGAAAGGAATACTATGATGATCAATGAAGAGATATTTGCCAAATTACTACTAATTAGAAGAGTTTTTAAGACTTAAAATAGTTTTATGTGTGAGGTTTTCTATAAtgactactttctgaatgcattctTTGAATAATGAGCTTTTCACTTTAAATGTATAGAGAACAATTTAAAACAGGTTGTTTTTAGCAAGCTTAGGATTGTCATATTATCAGCAGAGAGTGTAAATTTATATTTAATAATCATTAATTCAACAAATTTCAGTGAGTTAACCAGTtacagagagcagtagaggacagATCTGGATGTCGTAAAGACAAGTTCATTCCAATGCAGAATAGCTTAAGGCAAGCTTCTCCTTTGCAATGGTTTCAGTGGCTTGTCAATGAATACCCGACCTTCAGGTTAGATGTGCAAAGAACAACACTTGGGACCAGAAGACCGGCAGTGTTAGAGGCTGGGTTTTCACCAAGGAAAGCTGATGGAGGCCTATTGGTCAACAGAAGGACACAATGCAAAAAAAGATGACATAAACAAGCAGGAATTACATGGACAAATGTTGAGTTATGAGATACTCTCATTTTGTTTCAAGTCTACCTTTACCAGGAAATTGCTGTCTTTCCTCTGGTCTTACTAAACCAAATCACACGGTTTCAAGACATGAGTGAGTCTTAAAGGTCGACTTATGGCACAAAAAATTGtacattttcaaacagaaatggggTGTACCTTTGGTGGTTCGTCGAAGTGTCATTCTTGTCATGCATGCCGCGACCGACGTAGACAGTTTGTTAGCTAATATACCCACtttagctagccagtaactcctCCAGTGTGTTGACGTCATTTCACAGGATTTGTGTTTGGAAAGAAGCTGTAGAGGTCGGTAAGAAATGGCCCTTCTGTAGCCAAATATCTTATTCATAAATTGTGGTTGTGTTTTTAAGCATTAAATGACCTAGCATGATGGTGCATTGATCAGTTATACAGTTTAAAGCCACTATTTTTGTGTTTTTACCCAAAGTCAACCTTTAACATGTATATTAAAATGTACTAATAGTTGTTATCTTGCAGAATAACTACTCCTGGTTTATTAGTGTTGTAAATCCACCATGAAGTGTGAAAGTGCAATCAATGTACAGTGAGTGATACTTGGTCTATTTTACATTACATTGAAGGGTAGTAATGCAGTGGAATTCGTCAGACCCAGTTCATGGTTTATTGTGGTACGGTATGGATACATTCTGATGGAAGGAAACTCCTCCTTTAAAAGTTAATTAACTACTACAACATTTTGTCAGTTATGTATTAGCTCTTCCAAAACACTGCTCATCCAAGTTGACCCTATTGGCATCATACCTCAAGATTTCTTTTTATGGAGATATGCATTCTTGTGTGCATTCATACTCTTGTTTATTTTTCTGTTTTTCCTTGACAATAAAAAAACCTTCAAACTTGAA

Function

NR:

description
forkhead box protein J1-A-like

GO: NA

KEGG:

id description
K09402 FOXJ1; forkhead box protein J1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558300.2 True 4057 mRNA 0.45 3 46542192 46547913

Neighbor

gene id symbol gene type direction distance location
LOC110486584 LOC106606957 coding upstream 32951 46493946 ~ 46509241 (+)
LOC110486580 mfs11 coding upstream 48460 46488100 ~ 46493732 (+)
mettl23 mettl23 coding upstream 57092 46483136 ~ 46485100 (+)
LOC110485193 LOC106601421 coding upstream 205806 46302751 ~ 46336386 (+)
LOC110486574 LOC106606976 coding upstream 247724 46274324 ~ 46294468 (+)
LOC110486588 LOC106602603 coding downstream 11895 46559808 ~ 46565672 (+)
LOC110486589 LOC106606959 coding downstream 23329 46571242 ~ 46672347 (+)
LOC118938555 NA coding downstream 268094 46816007 ~ 46816999 (+)
LOC118938083 NA coding downstream 270625 46818538 ~ 46822978 (+)
LOC110486591 LOC106606947 coding downstream 847417 47395330 ~ 47400760 (+)
G1180211 NA non-coding upstream 3061 46538779 ~ 46539131 (+)
G1180210 NA non-coding upstream 3507 46538308 ~ 46538685 (+)
G1180205 NA non-coding upstream 16924 46524198 ~ 46525268 (+)
G1180200 NA non-coding upstream 44484 46497470 ~ 46497708 (+)
G1180193 NA non-coding upstream 66113 46471918 ~ 46476079 (+)
G1180716 NA non-coding downstream 130221 46678134 ~ 46713117 (+)
G1180743 NA non-coding downstream 199353 46747266 ~ 46754851 (+)
G1180758 NA non-coding downstream 213819 46761732 ~ 46813138 (+)
G1180776 NA non-coding downstream 262511 46810424 ~ 46827683 (+)
G1180047 NA other upstream 268591 46239144 ~ 46273601 (+)
LOC118936304 LOC106601427 other upstream 365630 46173911 ~ 46176562 (+)
LOC110485192 LOC106601391 other upstream 1012064 45529398 ~ 45554103 (+)
G1179362 NA other upstream 1079249 45462588 ~ 45462943 (+)
G1181472 NA other downstream 826250 47374163 ~ 47374477 (+)
tmem100a LOC106606948 other downstream 920203 47468012 ~ 47471205 (+)
G1181636 NA other downstream 1001366 47549279 ~ 47549548 (+)
G1181955 NA other downstream 1194448 47742361 ~ 47743064 (+)
G1182153 NA other downstream 1571700 48119613 ~ 48122575 (+)

Expression


Co-expression Network