LOC118938312


Basic Information

Item Value
gene id LOC118938312
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46553952 ~ 46561085 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035575.1
caggaggggtcaggagacactgtggcccactccgaggacacccccggacagggccaaacaggaaggatataatgAGAGGTGAGCTCTAGATGAGTTTGAATAGACATCAGCAGAGGCAGAGAGCTTGTCATGACAAGGTCCTTCGCTCTCTCTGATGGACCATTACTCACTGCTGGTGACTGCAGCTCCACTATCATGTCACTGGGAATCCACACTGCCTTCACCAGGTTCCACCTGGGCACAAAAACATACAAGGAGTCAGTCACGCCACCAGCTGTAAAGCACAGTAATACCAGTGTTTTTTTTAGCTGCAAATACATATGGACTAGGTATAATCATCTAACCACACCAACAGTCTAAAGTTGATGACACATACAGTCTCTAATTCTACTAGTTGCCGTCACTCTAGTTGTCCTTGGTTCCTCCATCCATTACTCACAACCTCTCCACTCAGATACTAGATTCCAGTGCTCGCCCAAACTCTGCTGAAGCCTATCCCTTTGCTGATCCGACCCAGTGGGAATGAAATCCTTCTGCCCGCGCACCGGGATCTTGTGGTTGCGCGTGCGGGCTTCGAACAGCTCAGATGGGCTGTCATTGAATCAGAAGCACAACAAGTTGCAAGAACTGACTCTGTCTCCAATTGGTGTCAGCACTGGCTACACGTCTTTCGCACTATATATGGCCTGGCCACGAGTCATCACACCTGACGTGAGAGGTGATAGTGGTGCATTTAGATGCATGGACAATGAGAGAATGCCCCGCTGAGCAAACATCCACACTACCAGGAAGAGGCTAAAGATCACTCACGCAAACACCCTGGCCCCTCCCATGGCCAAGCTGTAAAGACAGCAGCAAGAGGTGGCTGGCCAGATCCGATCTACCGCAGCCAGTCAGGTGTAGCAACGgcattctgacacacacacacacacgcaaacacacacagtttGAATGTTTGATCAACTCCTTTACACAGCTGACACATCAAGCCAACCACCGTTTGTCAACTGACTAATGACCTTAAAGCCAGCAGTTAAAAGTAAACGTAGGCCTATGTTATCCTTCATTTTGTATCCCCTGACCTGTTTtgaacagtacacacacatcCTATAATTCTGCACAAAAAAAGAATGTGAAATCCTGACAAGCTCTGGCCGGTAAGGTAATAAAGCATTCCCATCGTCACACACAAATCAACCTAGTCCCATTAACACCCCACACTGCAAATGAGTGATggcagagatgaggagagagagcgagagagagggtgggagatagAGAGGGCGAGGAAGAcaggggtgaaagtaaggcgCTACAGTCCAGTACTGCGTCCCGGCAAAATACATGACCCTAtcacaataattaaaacaaaatgtCAAGAAAACTGTAAGCTATTACACCATGATTTATCATTAGGCTACCACATGTCAGAGGCATGAAAAATGAGCGAATGGACTTCAAAATGGGTGGTATGGCCTATGCTCAAAAAAGCGATGTGGTTCAACAAGAATATTGACATTTTGCCAAGGCAGAGATGAATGGCCGTCACTGAAACACACAAGGAAAGCAGTGGATGCATAAATTCTGGCCTAATGACAATCACCAAAATGTCATTACACTTTGTGGTGTTTTGTggaacagatgtctctttccattcacaaCTGTTTGGAGGCTGGAAATATTTTGCGAGTGAATGAACGTGCGCGGGTAGCCTAAAGGAGCCATTTGATGTCATTTCGGTAAGAAATTACATCTACCTTCACccctagacagagagaggagaacggagagagaggaaaaCGGAGAGGTAAAAAGTGAGAGACAGatgggggggtggagagggagaccCAGACATTCACACTGGGGGCTGTAATGTGGTGTGGGAAATGACCAGGGAGGTCTCTGTTTCACTCCATCCCACGTCTCCTCCGATCAAATCATTTAGTGGATGCACCCGATGCAAACCGCCATGCTCTTTGCTGGGGGTGAGAGGCAACACCAATGAATGGAGGGACAGAGTCGTGGAGGGGTGCTGAGAGAAAGCTCTGGCTGAGCCAAGCAGTGAGGGGGCCTACGCTTCGACCAGGCCTGGGGGGCTTTTATGGCTTTTGTCGCCACGGCAGCTCACCTATTGAGGGGAGCCCCTAAGATATGTAAAACAGCAACGTTTCAAAGCCTCATCTCCACTGtgaaaaacaaagaaataaagaaatcAAATTAAAGTCTGGAAAGGAGTGAGTAAGAGTAGAATAAGAGAAAAAGAAAGTATCCTCTGTAGTAAAAAGCAAAGGGGGGCAGTAGCCAAGCCGTTTGCTGGAATCCGATGAGtgttgataaataaataaataaataaataaaggaatCAATAAAAAAGGGGGTGAGGTGGAAAGAGCTTACTATGCTCTTGTTTGCCCAGAGTgttattttcttttctcattgAGTCAGGCCAAGTCCTGCAAGCGGCTTGGTGCTTCTCCCACCCAGCATTGAGAGGCAGGTCTGGGCTTGCCCGGCCAAGGTCGGCCACGGCTGCCAGGAACGCATACGGCTCAACCTGCCCCCAGCTGCCATGGTCCTTGtttatgtttgttttttgttccTCTCAGTAAAtgtccctcccctccaccccccaaGGGAGGGACAGTCTGAGGAGCTCTCTCTAGAGTACAGCATGATCAGGTGTCAGTTGACCTGGTCACTTCCTCCAGAGGTATGTGGCCAAGGTGTGCATCGCTGCTGTTGTATTGTCTGTCTCCACAATGGCTTCTCCGTCTCCCTGTGTCACCTGCTCAGGGCCGACAGGGTGCTTTAGTTCATCACTGCCGCAAGGCTTGCTGGGAAATCCATAGAATGCCCACACTCTAGCTTCCATTGCTACAACCAATTAATTAATTCCTCCAACATTacactgtatatttttttgcCACATCGTGTCAGATGCATTTCTTCCTTGCTAACAACGATGATGTGAGATGGTGAACACAGAGGTGTAAACTGAGACTGATTCTGCTTTAAGCGGCTTCAGAGGGACTAGATCTCTGGGACTATTGTTCTCTCTCTGGAGTGACTCACCTTGCTGACTGTTACCTGGACAGCGTAACATACATGCTAATTAGGAAACACAGGAACCATGACACATAACACTTATGTCTGAGTAGGGAACACTTCTTGACAGGTGCACATTTATAAAATGATTAGTACAGCTAACCCTAATGCAGAACTTTAATTGCAATTTCAtttgttcattaacattattaatTTATACACTTTATAGTAGCCATACagtatctaggaaaaccaaagttctaaaggctgggcctaatatagtgtataagaggtcatacaagaagtTGTATAGTTATTCTAATGTTGAAaatgtggtgtgtaatgaggagcaactaggtgctgcacttgacacatttattaaattgcttattccagatactaataagcatgcacccggttactaataagcatgactgtaaaaactgttaaatccctgtggattgatgaggaattgaaacatTTGATGGTTGAGAGGgttgaggcaaaaggaatggcaaataagtctggctgcacagccgattggcaaacgtactgtaaattgagaaatcGTGTGACCTAAACTgaacc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035575.1 True 3633 mRNA 0.46 3 46553952 46561085

Neighbor

gene id symbol gene type direction distance location
LOC110486586 ubald2 coding downstream 18239 46510585 ~ 46535713 (-)
LOC110486583 srsf2 coding downstream 66070 46484771 ~ 46487882 (-)
LOC110486581 jmjd6 coding downstream 71089 46472494 ~ 46482863 (-)
LOC110486579 NA coding downstream 85609 46440996 ~ 46468343 (-)
LOC110486578 st6galnac2 coding downstream 125686 46422708 ~ 46428266 (-)
LOC110486590 LOC105022923 coding upstream 266667 46827752 ~ 46915018 (-)
LOC110485195 LOC102192139 coding upstream 368418 46929363 ~ 47345934 (-)
LOC110486593 LOC106606954 coding upstream 871321 47432406 ~ 47433949 (-)
LOC110486594 LOC106601485 coding upstream 899351 47460436 ~ 47466735 (-)
LOC110486596 LOC106606950 coding upstream 947839 47508924 ~ 47522717 (-)
G1180622 LOC106606962 non-coding downstream 9884 46543120 ~ 46544068 (-)
G1180621 NA non-coding downstream 11538 46542214 ~ 46542414 (-)
G1180610 NA non-coding downstream 31330 46519406 ~ 46522622 (-)
G1180611 NA non-coding downstream 32647 46519703 ~ 46521305 (-)
G1180607 NA non-coding downstream 43708 46508200 ~ 46510244 (-)
G1180645 NA non-coding upstream 20677 46581762 ~ 46600079 (-)
G1180729 NA non-coding upstream 116475 46677560 ~ 46744083 (-)
G1181081 NA non-coding upstream 249339 46810424 ~ 46906931 (-)
G1181243 NA non-coding upstream 517549 47078634 ~ 47078983 (-)
G1179621 LOC106607015 other downstream 1021290 45531858 ~ 45532662 (-)
G1179619 LOC106601391 other downstream 1023838 45529436 ~ 45530114 (-)
zgc:171844 LOC106607059 other downstream 1360647 45182660 ~ 45193315 (-)
il-8 il-8 other downstream 1466822 45085269 ~ 45087130 (-)
LOC110486618 LOC106606909 other upstream 1441946 47999581 ~ 48015951 (-)
G1183013 NA other upstream 1464016 48025101 ~ 48025776 (-)

Expression


Co-expression Network