LOC110486589 (LOC106606959)


Basic Information

Item Value
gene id LOC110486589
gene name LOC106606959
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46571242 ~ 46672347 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941303.1
TGGAGCCGGGCGAGTCGAGAGAAACCATGGGACCATAGCACTCACCCACTTCCACAGCGACGATCAGTGGACGAGGCCATCCACTGCTTTCCACTCCATTATTCAGAACATTCTGGTGGGCTTGGTGTACATGTTTAATCTGATCGTGGGCACGGGGGCACTGACGATGCCCAAGGCCTTTGCCCAAGCAGGTTGGGCGGTCAGCCTGGCGCTCATCTCCTTCCTGGCGTTTATGAGTTACATGACCACTACGTTTGTGATCGAGGCCATGGCAGCGGCCAACGCTCAGCTGTGCTGGAAGAGGAGGGAGCAGGAAGAGGTCCAAGACAGCGACTCCACCTCTGATTATTCGGATGATGATATCCGGGGACGATCAGAGCCAGAGATGAGGCCCATTTTGTCAGGCCAGCGAACAGGAGGAGGACACGTTGATCACTTTGACATTGTGGAGAGGGTAGAGATGGGTCAAATGGCCTCCATGTTCTTCAACAAAGTTGGTGTCAACATGTTCTACATCTGCATGGTAGTCTACCTGTATGGAGACCTGGCCATCTATGCTGCTGCTGTGCCCATATCACTAATGGAAGTAGCCTGTGGTAACCACTCATGCAGTGCTGGCAGTGTGAAATACGACGACACCGACTTGTGCTGGGGGCCTGTCACCAGGAAAGACGCCTACAAGGTGTTTCTGagCATCTTCACTGTGATGTTGGGCCCTTTCGTCTTCTTCGATGCTCAGAAGACTAAATACCTCCAGATCCTCACCTCACTCATGCGCTGGATCGCGTTCACCATGATGATTATCCTGGCTCTGATACGTATTGGTAAAGGCCGGGGCGAAGGCCACCCCCGTATGGCCCAGATCTCTGGGGTTCCAAACCTGTTTGGAGTGTGTGTCTACTCCTTCATGTGCCAGCACTCCCTGCCCTCCCTGGTGACGCCCATCTCTGATAAGAGGCGTGTGGGTACCCTGGTGGTGTGTGACTATGTCCTCATCCTTGGCTTCTACGGCCTGCTCTCCTTCACAGCCATCTTCTGCTTCGACAGCTCGCTGCTACACGACATGTACACCCTCAACTTCACTGACAACTGTGACGTGTTGGACATCCCCGCTTTGCGCTACTTCCTGGGCCTCTTCCCCGTCTTCACCATCAGCACCAACTTTCCCATCATTGCAGTCACGCTGCGCAACAACTGGAAGACCCTCTTCCACCGCGACGGGGGCACCTACCCCTGGGTGGTTGACCGCATCGTCTTCCCCCTCATCACCCTGGTTCCGCCCATCATTGTGGCCTTCTGCACCCACAACCTGGAGTCCCTGGTGGGCATCACGGGCGCCTACGCTGGCACGGGCATCCAGTACGTCATCCCCGCCCTACTGGTGTACTACGGACGGCGCCACCTGGTGCCTATGCTGGGCACGGACGAGGTCAACAAGCACCGGTCCCCGTTCCGCCACACCTTCTGGGTGTGGTTCGTAGTGGTGTGGGCTACCTTCTGCCTCATGTTTGTCACAGCCAACATCATCCTGGAGGACACCAAGAAATGAGGACACGGACTGACTGTGAAAGACCGGTTTCTCTGTGTGGGTGTCTTGTATTTCTACATTCTCTCTACCTGAGGCCTTCCAGAACTTGGTACAGGTCGGACGGTGTGCCTTTTTATGCTGCTCTTGTAGCATGGGAAACCCTTTTAATTACAGCGGTAATCAGCAGCCGAAACCATTATAAAGTGTCCTCCCCACCCCGGTTTCAGTACaaaggatgggactggagaaatgtaaccattaTAAAGTGTCCTCCCCACCCCGGTTTCAGTACaaaggatgggactggagaaatgtaaccattaTAAAGTGTCCTCCCCACCCCGGTTTCAGTACaaaggatgggactggagaaatgtaaccattaTAAAGTGTCCTCCCCACCCCTGTGTCAGTAAAAAGCTTgaggatgggactggagaaatgtaaccattaTCAAATTCATAGACCGAGCTATGCATGCAAGGACtagccatccatgatatcaaaattatagttttaacaatGTTTTAAAGCTATATAGTGtttatttacatttactttgtttacaaacagtcCCTGTTTCGGTAAAAAGGTTGGGGCTGGAGATGTAAACCATTATCAAATTCATAGATCAAGCTATGCATACAAGGACCAGCCTTCCATGATTTCACAATTATAattttaaacatgtttttaggctatatagtgtttatttacatttactttgtttacaacaTTGGAGTACAACAAGCTTATATTATAGGTACTGATCAGTTTTGAGAGTTGAACTAAGCggatgaggcatttataagttatattcttcaagaatcaatgagcACATACATTTATTAATTATATCAACTGCAGATCACCCCTTTTAAGAGTAATCTATACCATTTGTGGAAAGGGACCAAATATCTCGTGATTGTATGAAAGCTGCTACCGTATGTAGGAACACAAGGAAGAGGACCTTGTTCACTCTGTTCCAGTGTCCCTCTGTAGAAAAATACAAGCTGAACAATCGGACTCTATTAGCAAGGCATTGCACTTCACAACAGCACTGTTTTTAAGCATATACAAAGAGCTGGTCAACTTGTTTCCAAATGCTTCATTTTAAATCCAAAATAACTGAAGGAAGGATAGAGCAGGGAGGTGTCAGTGTTCCTCTGGACCTTCAGAAACAGTGTTGCGGCTAAAGACAGAATATGCTGAAACTATGGATAGAGCAATAGAACCTGACAACTAACTCAACGCTCCTGTTCCTAATGGCAATGCAGAGAGACTTTAATGTGGCTTTAAAATGAACTTGGGATGGTGAAGAAAGCAAGCTAAATGAATCTGTTATAATCAGTATATTATGGCTGGCATTTCTACATTCCTCACTGGTGGCTCTGCCTTAGTTCTCCTCGTCTTCCCTGTGAACAATGAACCTTTGTCCATGACAGATCCCTGACTGATGGGCATGATGACAGAGCTCCGTCTCTCGTCATCAGGAGACCGATCTTGAGTTCAAACTCTGTATACAAACCACCCTCATGTTTTACTGTTCACCACCAAATCATCAGCCCTTCATCAACTCCATGTCAGCACCCGACTGCTCTCTGTTGAACTTTGACCCCAGAAAGTTGTCAATGGACACAGGAAGGTTTATGTTGGCTACATCACCAGGAGCCAACTCGTACAGTGCCTACTGTGCCACACAAAGACACCTCTACAGTAGTCCCAGTATATCTCTTTTTGCAatcactgttggttaaggtcttgtaagtaagcatttcacggtaaagtctacacttgttgtattcggcgcatatggcaaataaagttggatttgattttaACCATCTGTCTCGTGCTCGCTCGTAACGAGAACTTTTCAGCTGGCTGATTTGTCGTCAGCTCTTTACTTGAGGTTTTATTACAGTTTCCTGGTAGCTCAGTTTGATCGACTAATTAGATTTTACTTCCAGACATGTGGGAACATCCTCTTCGCCCCGAGCTCTGCTCATGCTAATGTCCACGTTATATGCTTCTGCCTCCTCATTGTCATGTCCTCTGgttctatatatctatatatatctctgcTCTATAGAATATATATTATGTCCCATTATTGTCATCAAGTTTGGAGCCCAACTACAGGAGTCATACCTTTGTGAAACAGTATTGTTGTTGGGGAATGTAAATCATGTTTTGTGGTGTAGGGTTCCATATTACATGGTCACATTTAGAATAGTGGTTCTTTTACTATGTAAGTGCTAAAGTAATAGCTCAAATGTATCGTTAGCTGCCTGTCATGAGCATTCACCTGGTCAAAAAGGGAAATACTTACTGCCATTCATCGTTTGCACCTGCAACATTGCACAAGTTTGCACATAATTGCCTTGGGTTTGACCTTTTGTGTGTTTTACATAGACTTTTGCAAATGGTTTGAAGATGTTGTAAGGGTTGATAACTATGGTATTTATCTAACAGTCTTCAATGGTATTCTTAACCCATCAATATATACAGCTTGACAATTTAAAATGCGTTAGACTAATAGTCATGCATTGTAGCATATTGATGGCAGTACAGTATTGTTGAGGACTATTGAATGAGAGACCTCTGCATGTTGTTGGTATTGTGTGTGTTAGGACAGAAAAAGACTGCTGACTATTTCTGTAACACTGCTTCTCTCAATATTGGGTGCCTTTCTTCAATCTTGTGTTCCTTCTGGTAATTATTGTTAACATTACATTTCTGCATGCAGCTCCTTCCAAAATTCAGTAGTCAGTGGTTCCTTTAAGGCTTCCAGATTGTGGTGGATAGTTACTCCTCTTCTTATTTTTCCTCATCTTCTTTTCAATACAAATGTGCAATATGCTTTGAACTGGGTTGGGGAAGTAAGATTTCAAGCGAATATTGactgtttctgtttgtctgtgtgtgtgttcttctgtGTCAGTGTATGTGTCACTTTGAAAAGATTTTAAATGCGTATGTCTGACTCTTATTTGGAGTTGTGAAATGTGCCTTTTTCCCGGGGTTATTGTTTCCATTCATTTGTTGACTGTTGTTTTTCCTGGCACGTCTTTGTTTTAAGCAGCCTGTCAGATAAGATCTGCATGTAAGCCAGTTAATTTAACTGACAACCAATGTCTCCTCAAAATAAACTGGGATATCCTTGTCTTCTAAA
>XM_021558307.2
TGTTTGGCTAATGATTAAACCCCTGTTGTGCACACAGCCATTGAATGTGCTTGAGACAGAAGAATGGACAAAACAAGTTTATTGGCGGAGGATGTTTCTTTTCTGCACGAgttatttattattgccattCGCTGTCTTGTTGGCTCGAAATTTTGCTTTCCGGTTTAGTTACCCTGAAAAAGATTCACTGAACGCAGGTTGTGATCTCCAGTATTGTTGCCCATCATGGCAGGAGGCATCACAGAGACCGGGGAGCTCTACTCCCCGTATGTGGGCTTGGTGTACATGTTTAATCTGATCGTGGGCACGGGGGCACTGACGATGCCCAAGGCCTTTGCCCAAGCAGGTTGGGCGGTCAGCCTGGCGCTCATCTCCTTCCTGGCGTTTATGAGTTACATGACCACTACGTTTGTGATCGAGGCCATGGCAGCGGCCAACGCTCAGCTGTGCTGGAAGAGGAGGGAGCAGGAAGAGGTCCAAGACAGCGACTCCACCTCTGATTATTCGGATGATGATATCCGGGGACGATCAGAGCCAGAGATGAGGCCCATTTTGTCAGGCCAGCGAACAGGAGGAGGACACGTTGATCACTTTGACATTGTGGAGAGGGTAGAGATGGGTCAAATGGCCTCCATGTTCTTCAACAAAGTTGGTGTCAACATGTTCTACATCTGCATGGTAGTCTACCTGTATGGAGACCTGGCCATCTATGCTGCTGCTGTGCCCATATCACTAATGGAAGTAGCCTGTGGTAACCACTCATGCAGTGCTGGCAGTGTGAAATACGACGACACCGACTTGTGCTGGGGGCCTGTCACCAGGAAAGACGCCTACAAGGTGTTTCTGagCATCTTCACTGTGATGTTGGGCCCTTTCGTCTTCTTCGATGCTCAGAAGACTAAATACCTCCAGATCCTCACCTCACTCATGCGCTGGATCGCGTTCACCATGATGATTATCCTGGCTCTGATACGTATTGGTAAAGGCCGGGGCGAAGGCCACCCCCGTATGGCCCAGATCTCTGGGGTTCCAAACCTGTTTGGAGTGTGTGTCTACTCCTTCATGTGCCAGCACTCCCTGCCCTCCCTGGTGACGCCCATCTCTGATAAGAGGCGTGTGGGTACCCTGGTGGTGTGTGACTATGTCCTCATCCTTGGCTTCTACGGCCTGCTCTCCTTCACAGCCATCTTCTGCTTCGACAGCTCGCTGCTACACGACATGTACACCCTCAACTTCACTGACAACTGTGACGTGTTGGACATCCCCGCTTTGCGCTACTTCCTGGGCCTCTTCCCCGTCTTCACCATCAGCACCAACTTTCCCATCATTGCAGTCACGCTGCGCAACAACTGGAAGACCCTCTTCCACCGCGACGGGGGCACCTACCCCTGGGTGGTTGACCGCATCGTCTTCCCCCTCATCACCCTGGTTCCGCCCATCATTGTGGCCTTCTGCACCCACAACCTGGAGTCCCTGGTGGGCATCACGGGCGCCTACGCTGGCACGGGCATCCAGTACGTCATCCCCGCCCTACTGGTGTACTACGGACGGCGCCACCTGGTGCCTATGCTGGGCACGGACGAGGTCAACAAGCACCGGTCCCCGTTCCGCCACACCTTCTGGGTGTGGTTCGTAGTGGTGTGGGCTACCTTCTGCCTCATGTTTGTCACAGCCAACATCATCCTGGAGGACACCAAGAAATGAGGACACGGACTGACTGTGAAAGACCGGTTTCTCTGTGTGGGTGTCTTGTATTTCTACATTCTCTCTACCTGAGGCCTTCCAGAACTTGGTACAGGTCGGACGGTGTGCCTTTTTATGCTGCTCTTGTAGCATGGGAAACCCTTTTAATTACAGCGGTAATCAGCAGCCGAAACCATTATAAAGTGTCCTCCCCACCCCGGTTTCAGTACaaaggatgggactggagaaatgtaaccattaTAAAGTGTCCTCCCCACCCCGGTTTCAGTACaaaggatgggactggagaaatgtaaccattaTAAAGTGTCCTCCCCACCCCGGTTTCAGTACaaaggatgggactggagaaatgtaaccattaTAAAGTGTCCTCCCCACCCCTGTGTCAGTAAAAAGCTTgaggatgggactggagaaatgtaaccattaTCAAATTCATAGACCGAGCTATGCATGCAAGGACtagccatccatgatatcaaaattatagttttaacaatGTTTTAAAGCTATATAGTGtttatttacatttactttgtttacaaacagtcCCTGTTTCGGTAAAAAGGTTGGGGCTGGAGATGTAAACCATTATCAAATTCATAGATCAAGCTATGCATACAAGGACCAGCCTTCCATGATTTCACAATTATAattttaaacatgtttttaggctatatagtgtttatttacatttactttgtttacaacaTTGGAGTACAACAAGCTTATATTATAGGTACTGATCAGTTTTGAGAGTTGAACTAAGCggatgaggcatttataagttatattcttcaagaatcaatgagcACATACATTTATTAATTATATCAACTGCAGATCACCCCTTTTAAGAGTAATCTATACCATTTGTGGAAAGGGACCAAATATCTCGTGATTGTATGAAAGCTGCTACCGTATGTAGGAACACAAGGAAGAGGACCTTGTTCACTCTGTTCCAGTGTCCCTCTGTAGAAAAATACAAGCTGAACAATCGGACTCTATTAGCAAGGCATTGCACTTCACAACAGCACTGTTTTTAAGCATATACAAAGAGCTGGTCAACTTGTTTCCAAATGCTTCATTTTAAATCCAAAATAACTGAAGGAAGGATAGAGCAGGGAGGTGTCAGTGTTCCTCTGGACCTTCAGAAACAGTGTTGCGGCTAAAGACAGAATATGCTGAAACTATGGATAGAGCAATAGAACCTGACAACTAACTCAACGCTCCTGTTCCTAATGGCAATGCAGAGAGACTTTAATGTGGCTTTAAAATGAACTTGGGATGGTGAAGAAAGCAAGCTAAATGAATCTGTTATAATCAGTATATTATGGCTGGCATTTCTACATTCCTCACTGGTGGCTCTGCCTTAGTTCTCCTCGTCTTCCCTGTGAACAATGAACCTTTGTCCATGACAGATCCCTGACTGATGGGCATGATGACAGAGCTCCGTCTCTCGTCATCAGGAGACCGATCTTGAGTTCAAACTCTGTATACAAACCACCCTCATGTTTTACTGTTCACCACCAAATCATCAGCCCTTCATCAACTCCATGTCAGCACCCGACTGCTCTCTGTTGAACTTTGACCCCAGAAAGTTGTCAATGGACACAGGAAGGTTTATGTTGGCTACATCACCAGGAGCCAACTCGTACAGTGCCTACTGTGCCACACAAAGACACCTCTACAGTAGTCCCAGTATATCTCTTTTTGCAatcactgttggttaaggtcttgtaagtaagcatttcacggtaaagtctacacttgttgtattcggcgcatatggcaaataaagttggatttgattttaACCATCTGTCTCGTGCTCGCTCGTAACGAGAACTTTTCAGCTGGCTGATTTGTCGTCAGCTCTTTACTTGAGGTTTTATTACAGTTTCCTGGTAGCTCAGTTTGATCGACTAATTAGATTTTACTTCCAGACATGTGGGAACATCCTCTTCGCCCCGAGCTCTGCTCATGCTAATGTCCACGTTATATGCTTCTGCCTCCTCATTGTCATGTCCTCTGgttctatatatctatatatatctctgcTCTATAGAATATATATTATGTCCCATTATTGTCATCAAGTTTGGAGCCCAACTACAGGAGTCATACCTTTGTGAAACAGTATTGTTGTTGGGGAATGTAAATCATGTTTTGTGGTGTAGGGTTCCATATTACATGGTCACATTTAGAATAGTGGTTCTTTTACTATGTAAGTGCTAAAGTAATAGCTCAAATGTATCGTTAGCTGCCTGTCATGAGCATTCACCTGGTCAAAAAGGGAAATACTTACTGCCATTCATCGTTTGCACCTGCAACATTGCACAAGTTTGCACATAATTGCCTTGGGTTTGACCTTTTGTGTGTTTTACATAGACTTTTGCAAATGGTTTGAAGATGTTGTAAGGGTTGATAACTATGGTATTTATCTAACAGTCTTCAATGGTATTCTTAACCCATCAATATATACAGCTTGACAATTTAAAATGCGTTAGACTAATAGTCATGCATTGTAGCATATTGATGGCAGTACAGTATTGTTGAGGACTATTGAATGAGAGACCTCTGCATGTTGTTGGTATTGTGTGTGTTAGGACAGAAAAAGACTGCTGACTATTTCTGTAACACTGCTTCTCTCAATATTGGGTGCCTTTCTTCAATCTTGTGTTCCTTCTGGTAATTATTGTTAACATTACATTTCTGCATGCAGCTCCTTCCAAAATTCAGTAGTCAGTGGTTCCTTTAAGGCTTCCAGATTGTGGTGGATAGTTACTCCTCTTCTTATTTTTCCTCATCTTCTTTTCAATACAAATGTGCAATATGCTTTGAACTGGGTTGGGGAAGTAAGATTTCAAGCGAATATTGactgtttctgtttgtctgtgtgtgtgttcttctgtGTCAGTGTATGTGTCACTTTGAAAAGATTTTAAATGCGTATGTCTGACTCTTATTTGGAGTTGTGAAATGTGCCTTTTTCCCGGGGTTATTGTTTCCATTCATTTGTTGACTGTTGTTTTTCCTGGCACGTCTTTGTTTTAAGCAGCCTGTCAGATAAGATCTGCATGTAAGCCAGTTAATTTAACTGACAACCAATGTCTCCTCAAAATAAACTGGGATATCCTTGTCTTCTAAA

Function

NR:

description
transmembrane protein 104

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941303.1 False 4703 mRNA 0.45 9 46571242 46672347
XM_021558307.2 True 4858 mRNA 0.45 10 46581783 46672347

Neighbor

gene id symbol gene type direction distance location
LOC110486588 LOC106602603 coding upstream 5570 46559808 ~ 46565672 (+)
foxj1a LOC106601528 coding upstream 23329 46542192 ~ 46547913 (+)
LOC110486584 LOC106606957 coding upstream 62001 46493946 ~ 46509241 (+)
LOC110486580 mfs11 coding upstream 77510 46488100 ~ 46493732 (+)
mettl23 mettl23 coding upstream 86142 46483136 ~ 46485100 (+)
LOC118938555 NA coding downstream 143660 46816007 ~ 46816999 (+)
LOC118938083 NA coding downstream 146191 46818538 ~ 46822978 (+)
LOC110486591 LOC106606947 coding downstream 722983 47395330 ~ 47400760 (+)
LOC110486592 LOC106606958 coding downstream 731427 47403774 ~ 47410322 (+)
tmem100a LOC106606948 coding downstream 795665 47468012 ~ 47471205 (+)
G1180211 NA non-coding upstream 32111 46538779 ~ 46539131 (+)
G1180210 NA non-coding upstream 32557 46538308 ~ 46538685 (+)
G1180205 NA non-coding upstream 45974 46524198 ~ 46525268 (+)
G1180200 NA non-coding upstream 73534 46497470 ~ 46497708 (+)
G1180716 NA non-coding downstream 5787 46678134 ~ 46713117 (+)
G1180743 NA non-coding downstream 74919 46747266 ~ 46754851 (+)
G1180758 NA non-coding downstream 89385 46761732 ~ 46813138 (+)
G1180776 NA non-coding downstream 138077 46810424 ~ 46827683 (+)
G1180779 NA non-coding downstream 143488 46815835 ~ 46819263 (+)
LOC110485193 LOC106601421 other upstream 234964 46302751 ~ 46336386 (+)
G1180047 NA other upstream 297641 46239144 ~ 46273601 (+)
LOC118936304 LOC106601427 other upstream 394680 46173911 ~ 46176562 (+)
LOC110485192 LOC106601391 other upstream 1041114 45529398 ~ 45554103 (+)
G1179362 NA other upstream 1108299 45462588 ~ 45462943 (+)
G1181472 NA other downstream 701816 47374163 ~ 47374477 (+)
G1181636 NA other downstream 876932 47549279 ~ 47549548 (+)
G1181955 NA other downstream 1070014 47742361 ~ 47743064 (+)
G1182153 NA other downstream 1447266 48119613 ~ 48122575 (+)

Expression


Co-expression Network