LOC110486590 (LOC105022923)


Basic Information

Item Value
gene id LOC110486590
gene name LOC105022923
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 46827752 ~ 46915018 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558310.2
gagaatcaaagGATAAATCCTTACTACATAATGATTAGGACTCACAAGCCCTTCCTGTGACATGGAGTGTAGAAGCCAGGATTACAACGGGACAGAGTAAAGAGGCTACAGGCAACACagggggaaggagggacacaGGTGCAAGAAGAGGAAGGGGCACACGGGAACAACAAGTGCATTGAACACGGCCACTAAAGGTTTCAGGGATCCATGCAACAACCTGCATCAAGAGCGATTTGGAAGCTCACCGGCTGACCTGCTGCTGCTGTCCTCTGTCTGGGCCATCTGTCTGTGGGCGTTGGAACTAGCAGACCCAAGCCCAGCATCTGGACAGCACTGTGTCTTACTTAATGGAGGGGCCAGCGTGCCGCTGGAGAGCACGGGGAGCAACCAGAGGCTCAGGTTATCCTGCAGACGTGAATTCGATGAGAAATTGACATATAGTCGATGAGTGTGTCATCAAAAAGATGGAGTACATCTGTTTCTTTCACCTGGGCGCGACAGCAGTGGGCAGTGAGAGAAGGAAGAGGGCGTCGGGCGCAGTCTTGACTGTCGGAAGACGTGAAGAATTTCACTGAATCGATCACTTGTTTTCGGTTGTTTTTTTATGGCTCTAACTGCGTTATTGGGCCACTTCTGAGATATTTTCTCTTGGCCAGGAAGTGGATACAGATTAGATGTGTAATCAGAGGTGAGAGGCTGCTGAAGACCAGCCAAGACACagaaattacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcaaacacctATGCGGTATGCTTCATTACAATAGTACATATATACACTCTCTGCCCTATTgagcacacacatactcacatacacacatacagacacagccCACCTCGGACAACGCTCTGGGACTTGTTACCGTAACAAGCCTCTCTGGGGCTAGCTGTTCCAACTTCTATCCTCACGCCTTACACTGGAAATTAGCCTGTCACTACGGCCGTGGACTGCCTCATTCTGTTTATGAGTTGCTCCTTCTTTCCTCTTGCACCTGCTTTCTTCAATCACCCTCCATCACTCTATCCATActtccaccccccaccccacctcccTTACCAGCAAGAGATAATGTGACCTTCTGCCAAAGTGCTGGAAACCATGCCACGGTCGCAGCGGGCTCCTCTGTTGCTACTGAAATAGACTCAAACAAGTGCCGAAAGGAAGGTTGCGGGGGAGTGAGGGAAGGGAGACAAGGGAAAAAAGAGAAGCAGGACAGCTGAAGCCACGGACACGGAATGAGCCAGTGGGAGCCAGGGCTGGATGCGGATTGCCAACGCAGGCAGTAGGTGACTGAGATGGGCGTTCGTCTAGGCCACTTGAGCGACTCCCCGTGGTGgtggccgctgctgctgctgttgctgctctgCACTGCCCCCTGGTGCCAAGGTCGTCCTTTCGCAACACCCTTGCCAGCAGTCAACGTGGCGGTGGTGTTCAGTGGCTCGGCCTACCAGCAGGAGATCAAGGGGCGTCTCAGCAGGGAGAACTTCATGGACCTGCCCTTGGAGGTGAATCCCATCACAGTGCTGGTAAACAACACCAACCCTCGGGCCCTGCTCACACGCATCTGTGACACACTGGCGGCCAACCGCGTACATGGTGTGGTGTTTGAAGACAACATTGGCTCGGAAGCCGTGGCACAGATCCTGGACTTCATTGCCCTGCAGACGGCCGTGCCCATCGTGGGCATCAGCGGGGGCTCCGCCATGGTCCTGCCACACAAGgGTGACGGCTCCACGTTCCTCCAGCTGGGCTCCTCCATCGAGCAGCAGATAAACGGCATGTTCAAGGTGATGGAGGAGTACAACTGGGACAGCTTCGTGGTCATCACCAGCCTGTACCCGGGCTACGAGGTCTACGTGGACTATGTCAAGACCTTCACTGACACCAGCTACTTCATGTGGGAACTGCAGGACGTGCTGACCTTCGACATGTCCGCCGACGGCATGAACGACATCCGGGCACGGCGCCTGCTGCAGCAGATCGACGCCCAGGTACTGCTGGTATACTGCTCCCACGAGGAGGCCCAGTACCTGTTCAGAATGGCCGGAGAGGCCGGCCTGCTGGGGCCTGGCTACATCTGGATCCTCCCTAGCCTTGCCGTGGGGAACCCAGACATGCCCCCACCAAACAGCTTCCCTGTGGGCCTCATCAGCATCATCACCGACCGCTGGCGCATGAGCTTGAGGAAGAGGGTGCGGGATGGGGTGGCCATCGTGGTCAAAGGGGTGCAGAGCTTCCGCAAACAGAGGGGCTTCATCCCCGAGGGCCACAACGACTGCCACAGCCCTGTTAGGGCATCTTCTAATGATACACTGTTCAGGCACATGTTAAACGTAACATGGGAACACAACGACTTCTCGTTCAACCCTGAAGGGTATCTGATCAACCCAGCTATGGTAATCATCACCTTAGATCGAGAGAGACAGTGGGATAAGgTGGGGAACTATGAGATGGGGATCCTGCAGATGAGATACCCGGTGTGGCCTCGCTACGGCACCTATCTGGAGCCCGTATCAGATAACAGACACTTGACTGTGGCCACACTGGAGGAACGTCCCTTTGTCATAGTGGAGGCTGTCGACCCCATGACTGGGACCTGTGTCAGCAACACCGTGCCCTGCCGCCGCCAGTCCAACAAGACAGAGACTATTGTAGGTCATACTGAGCCCTACACCAAACTGTGCTGTAAGGGTTTCTGCATAGACATCCTGAAGAAGCTGTCCCGCACCACCAAATTCTCATACGACCTCTACCTGGTCACCAACGGGAAGCACGGCAAGCTGGTCAGAGGCAGTTGGAACGGCATGATCGGAGAGGTGGTATACAAGCGGGCGGACATGGCCATTGGCTCGCTGACCATAAACGAAGAGCGCTCAGAAATTATCGACTTCTCCGTGCCGTTTGTGGAGACGGGGATCAGTGTGATGGTCGCCAGGAGCAATGGGACCGTCTCACCCTCTGCCTTTCTTGAGCCCTACAGTCCGGCGGTGTGGGTGATGATGTTTGTGATGTGCTTAACGGTGGTAGCTGTCACAGTGTTTATCTTTGAGTACTGCAGCCCTGTGGGGTACAACCGGAGTCTGGTGAGCGCCAAGGATCCCGGAGGCCCCACCTTCACTATTGGGAAGTCTGTGTGGCTGCTGTGGGGCATCGTCTTCAACAACTCTGTTCCAATTGAGAACCCCAAGGGCACCACCAGCAAGGTCATGGTCCTGGTATGGGCCTTCTTCGCTGTCATCTTCCTGGCCTCCTACACTGCCAACCTGGCAGCCTTCATGATCCAGGAGCAATACACTGACACAGTCTCTGGACTGAGTGACAAAAAGTTCCAGAAGCCACAGGAGCAGTATCCACCGTTTCGCTTTGGTACGGTCCCAAATGGAAGCACAGAGAGGAACATCCGGAGCAACTACCCTGAGATGCATGCCCACATGGTCAAATACAACCAGAAGGGTGTGGAGGAcgccctcaacagcctcaaatcaGGGAAACTGGATGCCTTCATCTATGACGCTGCTGTGCTGAACTACATGGCAGGTAAAGACGAGGGCTGTAAGCTGGTGACCATCGGCAGTGGGAAGGTCTTTGCCACCACTGGCTACGGCATCGCCTTGCAGAAGGAGTCCCGATGGAAACGTCCTATAGACCTGGCCCTGCTCCAGTTCCTAGCGGATGGTGACACGCAGAAGCTGCAGACGGTGTGGCTCACAGGGATCTGTCGTAACGAGAAGAAGGAGGTGATGAGCAGTAAGCTGGACATAGATAACATGGCGGGCGTCTTCTACATGCTGCTGGTGGCCATGGGGCTCAGTCTCCTGGTGTTCAGCTGGGAACATCTGCTCTACTGGAAGCTGAGACACTCAGTACGCAAGTCTGAACGCCTCGACTTCCTGCTCGCCATCAGCAGGGGAATCTACAGCTGCTTCAACGGTGTGGAGGACTCTGACCGCAACGGAAACCTGCAGAACCCTGACGTCACCACCAACTACACCCAGGCCAACATGCTGAAGATGCTGCAGACAGCCAAGGACATCGTGACCTCGACCAGAGTGGAGAACTCCCTGGACAATGCCACCAAGACCATAGAGAACTGGAGCCGGCGAGGAGCCGACAATGTGCGGGTTGGCCTGCCGCCTCGGGTGGCAACCACTATAGACATGGGCCACAGCCGCCTGCCCTATATCTCCAGCATCACGGACAACCACTCGCCCTACCCCCAGAGGGCGCTCGCTTCCACCTTCCCCATCCACTACTCGGACAGCGCCACCCAGCCCCTGCTGGACAAATCCAGGGTGGTGACGCGGCCTACCCCACTACGCTACACCCTTCCGGCCCGTGGCAGCCACCACTTCTACGAGAGAACCCTACCCATCTCCAGCCTCAGCAGCCCCCACATCGCCATGAGGGACCCTGCTCCCCCCAGCACCTCCAGTCACAACCCACACCCCAGCAGCAGGTTGTATGTGGAGAGCCAGCCCCGGCACCCCACCTCCCCATTTGTCCCCTACAGAGAGTTCCAGGTGCCTGACATCTATGTGGAACACCACAAGGGGCCCCTGGGACGGAAGTTCAGCTACCCCCCTGACCACATGGGCAGGAAGAAGAGGTCCCACAGCTACGTGTTTTCTGAGGCCCAAGACACCAGGGGGAGGAACGACTATGATGAGCCAACCTCCTGTCTGGCTGAGCTGAGGGCCAACCACCTCCTGAACAACCATGCCCCTTCTGCATCAACCATGGCCTGCATGGGGGGCCACTACCCCAGTGGCAGCGCCAGCTGCAACTCCTGCATGAAGCCCTACCTGGAGCCTGAAATGGAGGATGTGCCCTTGCTGGGGAAGGACAAGGTCAACCGCCGGGCCTCTTTTCTCAAGGCCACCTGGAGCAGTGACAGGATCCGCCAGCTGGGTGAGAAGCCCTCCACCTCCACTATGCCTGACCTGTTCCCCCGCGTAGTGGTGGCCAACCCCAAGCCCCACAAGCTGTATGGCAGCCAGGGGAACAACCTGTGCTACCCCCTGGCCGCTGAGCCTGCCTACCTAGACCCGGCACATATGCGTTCCTACCCCTACAAGCAGCAGAAGCTCAAGTGCTCCCAGTCCACCCGGCTACCATCCTACAGGGAGGCTATCCTGCAGAACGCAGCCGCCTTGCGGCGCTCCTCCTCCACTGTGGTGCACAGACACTACTCCACCTACCTGAACTCCTACACAGACCTGCCTGTATACGTGGGGCCACTGCCCCAGGGGCCCGGGCCATTCTACAACAAGGACATGTGCCACTTGTTCCCCTGTGCAAGCCACTGCCCTAACAACAATGCCCTTGTGCCCCGTATGGGGGACCGACAGGTAGTCTACCAGAACAATATGTTTGGGGGCTACGAGGGCGCGGTGGGGCGGTCGCGAGAGGAGCCCCCCCTGCCCGGGTCTGGGAGCAGGGATCGGAGGGAGGTCCTGGTGGCCAGAAGAGTCAACAGTCCCTATGTGCCAAAGACCTGGGGCAGGGTATCCAGTCTGGAGTCTGAGGTCTGAGCCCTCCCCCTCCATATCTTCAGGCTGATGGACTATCCCTCCCTCTGGGGAGGGGAAAGCCTACCTGGGGCTTCCCCCTCAGCCTTTGGTTTAGGCAAAAATGAATGAATTAGCTACCAATATGGATGACTTGAGTGTTTACTCAGTGCAATAATATCCTTGGCGGACGGAAGGAAGTAGAGGACAATGAAAGGCTGTTACTGCTGGGACATTGTCAAGTAAACATTAAGCGATAAGAAAAGAAAAGAATGTTGAATAGTATTTAATACCTTCAAATTTAACCTGTTGAttgttatttaaaacatttttaaatgctgtcttgctgtgagagagagagagagagagagagagagagagagagagag
>TU1346918
GTGACATGGAGTGTAGAAGCCAGGATTACAACGGGACAGAGTAAAGAGGCTACAGGCAACACagggggaaggagggacacaGGTGCAAGAAGAGGAAGGGGCACACGGGAACAACAAGTGCATTGAACACGGCCACTAAAGGTTTCAGGGATCCATGCAACAACCTGCATCAAGAGCGATTTGGAAGCTCACCGGCTGACCTGCTGCTGCTGTCCTCTGTCTGGGCCATCTGTCTGTGGGCGTTGGAACTAGCAGACCCAAGCCCAGCATCTGGACAGCACTGTGTCTTACTTAATGGAGGGGCCAGCGTGCCGCTGGAGAGCACGGGGAGCAACCAGAGGCTCAGGTTATCCTGCAGACGTGAATTCGATGAGAAATTGACATATAGTCGATGAGTGTGTCATCAAAAAGATGGAGTACATCTGTTTCTTTCACCTGGGCGCGACAGCAGTGGGCAGTGAGAGAAGGAAGAGGGCGTCGGGCGCAGTCTTGACTGTCGGAAGACGTGAAGAATTTCACTGAATCGATCACTTGTTTTCGGTTGTTTTTTTATGGCTCTAACTGCGTTATTGGGCCACTTCTGAGATATTTTCTCTTGGCCAGGAAGTGGATACAGATTAGATGTGTAATCAGAGGTGAGAGGCTGCTGAAGACCAGCCAAGACACagaaattacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcaaacacctATGCGGTATGCTTCATTACAATAGTACATATATACACTCTCTGCCCTATTgagcacacacatactcacatacacacatacagacacagccCACCTCGGACAACGCTCTGGGACTTGTTACCGTAACAAGCCTCTCTGGGGCTAGCTGTTCCAACTTCTATCCTCACGCCTTACACTGGAAATTAGCCTGTCACTACGGCCGTGGACTGCCTCATTCTGTTTATGAGTTGCTCCTTCTTTCCTCTTGCACCTGCTTTCTTCAATCACCCTCCATCACTCTATCCATActtccaccccccaccccacctcccTTACCAGCAAGAGATAATGTGACCTTCTGCCAAAGTGCTGGAAACCATGCCACGGTCGCAGCGGGCTCCTCTGTTGCTACTGAAATAGACTCAAACAAGTGCCGAAAGGAAGGTTGCGGGGGAGTGAGGGAAGGGAGACAAGGGAAAAAAGAGAAGCAGGACAGCTGAAGCCACGGACACGGAATGAGCCAGTGGGAGCCAGGGCTGGATGCGGATTGCCAACGCAGGCAGTAGGTGACTGAGATGGGCGTTCGTCTAGGCCACTTGAGCGACTCCCCGTGGTGgtggccgctgctgctgctgttgctgctctgCACTGCCCCCTGGTGCCAAGGTCGTCCTTTCGCAACACCCTTGCCAGCAGTCAACGTGGCGGTGGTGTTCAGTGGCTCGGCCTACCAGCAGGAGATCAAGGGGCGTCTCAGCAGGGAGAACTTCATGGACCTGCCCTTGGAGGTGAATCCCATCACAGTGCTGGTAAACAACACCAACCCTCGGGCCCTGCTCACACGCATCTGTGACACACTGGCGGCCAACCGCGTACATGGTGTGGTGTTTGAAGACAACATTGGCTCGGAAGCCGTGGCACAGATCCTGGACTTCATTGCCCTGCAGACGGCCGTGCCCATCGTGGGCATCAGCGGG
>TU1346919
ggggaggggtggagaaatagtaagcagggagggagagggagtgagagagagagggagagagagaatcaaagGATAAATCCTTACTACATAATGATTAGGACTCACAAGCCCTTCCTGTGACATGGAGTGTAGAAGCCAGGATTACAACGGGACAGAGTAAAGAGGCTACAGGCAACACagggggaaggagggacacaGGTGCAAGAAGAGGAAGGGGCACACGGGAACAACAAGTGCATTGAACACGGCCACTAAAGGTTTCAGGGATCCATGCAACAACCTGCATCAAGAGCGATTTGGAAGCTCACCGGCTGACCTGCTGCTGCTGTCCTCTGTCTGGGCCATCTGTCTGTGGGCGTTGGAACTAGCAGACCCAAGCCCAGCATCTGGACAGCACTGTGTCTTACTTAATGGAGGGGCCAGCGTGCCGCTGGAGAGCACGGGGAGCAACCAGAGGCTCAGGTTATCCTGCAGACGTGAATTCGATGAGAAATTGACATATAGTCGATGAGTGTGTCATCAAAAAGATGGAGTACATCTGTTTCTTTCACCTGGGCGCGACAGCAGTGGGCAGTGAGAGAAGGAAGAGGGCGTCGGGCGCAGTCTTGACTGTCGGAAGACGTGAAGAATTTCACTGAATCGATCACTTGTTTTCGGTTGTTTTTTTATGGCTCTAACTGCGTTATTGGGCCACTTCTGAGATATTTTCTCTTGGCCAGGAAGTGGATACAGATTAGATGTGTAATCAGAGGTGAGAGGCTGCTGAAGACCAGCCAAGACACagaaattacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcaaacacctATGCGGTATGCTTCATTACAATAGTACATATATACACTCTCTGCCCTATTgagcacacacatactcacatacacacatacagacacagccCACCTCGGACAACGCTCTGGGACTTGTTACCGTAACAAGCCTCTCTGGGGCTAGCTGTTCCAACTTCTATCCTCACGCCTTACACTGGAAATTAGCCTGTCACTACGGCCGTGGACTGCCTCATTCTGTTTATGAGTTGCTCCTTCTTTCCTCTTGCACCTGCTTTCTTCAATCACCCTCCATCACTCTATCCATActtccaccccccaccccacctcccTTACCAGCAAGAGATAATGTGACCTTCTGCCAAAGTGCTGGAAACCATGCCACGGTCGCAGCGGGCTCCTCTGTTGCTACTGAAATAGACTCAAACAAGTGCCGAAAGGAAGGTTGCGGGGGAGTGAGGGAAGGGAGACAAGGGAAAAAAGAGAAGCAGGACAGCTGAAGCCACGGACACGGAATGAGCCAGTGGGAGCCAGGGCTGGATGCGGATTGCCAACGCAGGCAGTAGGTGACTGAGATGGGCGTTCGTCTAGGCCACTTGAGCGACTCCCCGTGGTGgtggccgctgctgctgctgttgctgctctgCACTGCCCCCTGGTGCCAAGGTCGTCCTTTCGCAACACCCTTGCCAGCAGTCAACGTGGCGGTGGTGTTCAGTGGCTCGGCCTACCAGCAGGAGATCAAGGGGCGTCTCAGCAGGGAGAACTTCATGGACCTGCCCTTGGAGGTGAATCCCATCACAGTGCTGGTAAACAACACCAACCCTCGGGCCCTGCTCACACGCATCTGTGACACACTGGCGGCCAACCGCGTACATGGTGTGGTGTTTGAAGACAACATTGGCTCGGAAGCCGTGGCACAGATCCTGGACTTCATTGCCCTGCAGACGGCCGTGCCCATCGTGGGCATCAGCGGG

Function

NR:

description
glutamate receptor ionotropic, NMDA 2C-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558310.2 False 6020 mRNA 0.56 13 46827752 46914958
TU1346918 False 1762 TUCP 0.54 2 46883428 46914902
TU1346919 True 1878 TUCP 0.53 2 46883428 46915018

Neighbor

gene id symbol gene type direction distance location
LOC118938312 NA coding downstream 266667 46553952 ~ 46561085 (-)
LOC110486586 ubald2 coding downstream 292039 46510585 ~ 46535713 (-)
LOC110486583 srsf2 coding downstream 339870 46484771 ~ 46487882 (-)
LOC110486581 jmjd6 coding downstream 344889 46472494 ~ 46482863 (-)
LOC110486579 NA coding downstream 359409 46440996 ~ 46468343 (-)
LOC110485195 LOC102192139 coding upstream 14545 46929363 ~ 47345934 (-)
LOC110486593 LOC106606954 coding upstream 517448 47432406 ~ 47433949 (-)
LOC110486594 LOC106601485 coding upstream 545478 47460436 ~ 47466735 (-)
LOC110486596 LOC106606950 coding upstream 593966 47508924 ~ 47522717 (-)
LOC110486597 LOC106606951 coding upstream 650299 47565257 ~ 47597295 (-)
G1180729 NA non-coding downstream 83669 46677560 ~ 46744083 (-)
G1180645 NA non-coding downstream 227673 46581762 ~ 46600079 (-)
G1180622 LOC106606962 non-coding downstream 283684 46543120 ~ 46544068 (-)
G1180621 NA non-coding downstream 285338 46542214 ~ 46542414 (-)
G1180610 NA non-coding downstream 305130 46519406 ~ 46522622 (-)
G1181243 NA non-coding upstream 163676 47078634 ~ 47078983 (-)
G1181305 NA non-coding upstream 249584 47164542 ~ 47165117 (-)
G1181473 NA non-coding upstream 458985 47373943 ~ 47374514 (-)
G1181492 NA non-coding upstream 471146 47386104 ~ 47386413 (-)
G1179621 LOC106607015 other downstream 1295090 45531858 ~ 45532662 (-)
G1179619 LOC106601391 other downstream 1297638 45529436 ~ 45530114 (-)
zgc:171844 LOC106607059 other downstream 1634447 45182660 ~ 45193315 (-)
il-8 il-8 other downstream 1740622 45085269 ~ 45087130 (-)
LOC110486618 LOC106606909 other upstream 1088073 47999581 ~ 48015951 (-)
G1183013 NA other upstream 1110143 48025101 ~ 48025776 (-)
G1183126 NA other upstream 1344566 48259524 ~ 48259989 (-)

Expression


Co-expression Network