LOC110486592 (LOC106606958)


Basic Information

Item Value
gene id LOC110486592
gene name LOC106606958
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 47403774 ~ 47410322 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941313.1
gtcaatataatagaacaTTTTTGAACACAATATGTGAAAACGATTTGATTGGTCACACGTCGAGGTGTGACGTTTACAGGGACGGTAACTGCCAAGGGACAAGCTTCGAGAATGCGTTTTCTTTCCGCCCTCTTTTCCATTCTTTTCATAAAATACTAGAGTAGGCAAGAGCGAACATGGAGGAATTGAGCGCCGTAGGAGAACAGGTTTTCGACGCTGAATGCATCCTGAACAAACGACTAAGAAAGGGGAAGTTAGAGTTTCTTGTAAAGTGGAGGGGATGGTCATCCAATATTTTGATGGACATATTTTCCTTTTGCTTCAGGCACAATAGCTGGGAGCCCCAAGCGAACATCCTTGACCCAAGATTATTGGCTGCATTTAACAAGAGtGAACAAGAAAAGGAAATCCTGATCTGCAAGAGAGGGAAAAGGCCGAGGGGGAGACCTCGAAAAGTTGTGGAAACTGTGCCTGAAGTGTCAAAGTCAAGCAGCTCTTCGTCATCGTCATCTTTGTCTGGCTCATCATCGtcatcttcttcctcttcctcctcatctgaTGAAGACGACGATGATAACAACGATAGAAAGGCAAAGCCAGGTCCCAGAACACGGGAGCTCCACCCCGTCCCTCAGAAGAAAGCACAGATTGTTGTGGCTAAGCCGGAGCCCCCGAGGAAGAAGCGAGGCAGGAAAGCACTGCCTGCAGAAATGAAGGCCATTCAACAGAACAAGGGCCAGCGCAAGATCATAAAGACAGTTGCCAAAGACTCCCCTGCAGACCTCCGAGGTGGAATCAAGAAACCCTTTCACCCAGCCAGCTTCACCTTCATGGGGTTGAACAGCAGAGGACCTCTGAGTGTCCAGGGCAGATGTTCCCTGGCCCAGGGTGGGACTACTAAAAACTCCATGAACACTGCAGCCTCTGGCCGGTCAAATACCTtagcttctctctctttcaaccAGAGATCCAACCAGAGCAAGAGTCAAGCTTCTGACTTCAAACTGTCGGTCTCTGAAGTGGACAGTGGAGCAGGTTTGGACTTAAAAACGACTGCAAGCAAATCTCCTGGCGTAGCAGCGTTGAATTTGCATAACTCCAAACTCTCAACCAGCAATAGCAACCTGCAAGGAGCTTTTCAGCCACAGCTGGGTTCCCACAATGGGCAGAAGAAACCAGATGCCCCTGGGCAAACACCAGTGCAGCAGGTACCCAATAACAAAACTGCTGCCCCCTTCTCCACTCCTAAAGGCCCTGCCAACCAAGCTGCAAGCCTTCAGGCACTAAACCTGCAGAGTGTGAACAAATCAACACAGGGCAACGGTACTCCAGGCAATGGCACCGCGCCAGTGTCCAACCTGCGAAGCACCGCCAACCCAGCACGGAAAGACACAGTTGGTCAGTATGGTCTAGAGAAAAATCCTGTCCAGAGTCCTGCCACGCCTGGTGGACAACAGCCCAGAAAGAACCATCCTGGAGTTGATAAGGTCAAAGCGGAGGAGGTCAGTGAAACAGGTGTCATGACAGAGAGGCCTGAGAGGCTGACTACAACAAGGGCCCAAGGGAGGGTTGAGAAGAGCATTGTCCAGAACCCCTCCGCAGAGGCCAGAGACATCCTGGGCAAGCGGGAGAGATCTGCCTCCAAAGACAGTGGCAAACAGGCCAAGGTCCTCCTGAGTGAGATGAGCACCGGTGAGGAGAGCACCTCAGACTCTGACCAGGATTCTCCCTACCCAAGTAACAGTCAGGACTTGTCCATCTCAGTCCAGACCGGCCAGGACTGGAAGCCCACTCACAGCCTTATCGAGCATGTGTTTGTTACTGACGTCACTGCCAATCTTGTCACTGTCACAGTCAAGGAGTCCCCAACCAGTGTGGGCTTCTTCAACATACATAATTATTGACTGAACACCGGTAATTGAGCTACCTAGCAAAGGGGCTGCAAAGTAGACAGCATAGGTCTTAAGTGAGGTATTGAATGAAGTAGATAAGTTAGAGCAGTGTTAATGCACATAAGTTTACTGCAGTGATGTGAAGTTTCCCCTTCTCTACAATGTATTAATCTGAAATCTGCAGACTTACTCTTTTGCTTTGCACCGTTAGTAAGACAATGTACTTTTGATATATTGTACACATGAAACAAAACAAGCTAATCAACTGGAGGAAAGCTTTGTCTTAAGGGAACTATTCAGGGCCAGGTGTAAACTAGATTGGTAGCTTGTTTCATTACAAACTAGTAATGCAACTCTTAGGGATGTCATTATAATGTAGCTACCTCTAGTTTAATCCAGCTCTCGTTTTGTATTCAATATTCTTGTGAAGTTCTTCTAGAACGGCAAACTTGgatgtactgttttttttttctccctcgaGTATAAGATGTTGTGACCATTACAATCAATTTGCCAATTCACATTAGTGTAAAGCACTGTAGTCTTATATGAAGTGTAAAATTCCAATGAAATGACAAATAATAGCAACATTTTCTGATTTGAAAAATGTAATTACTGGAAGAGCTCTTGAAGCTATAACATTAACAAAGAAGTTTGCAAGGCAAACCCGGTGTTGCATTGAGGACCAAGTTCTCATCGGTTGACTGCACTGAGTTTATTTCCTCAGTGCAGTCAGTCTTATCAGTGAAGTATTCCACCCAGGCTGGAGGACGAGGGAAGAAGATACACTATCTCTGTTCTCCCCTAGTGCTCAGATAAGACCGGTTACTGGCCGAGGTAACTCCTCTCCCTTCAGGTCTGTGCTCCCACAACCCCACTAGGGCATTCACTGGCGGGTGTACTCCTGTCACAACTGGTGATTATTATGGATGAGCCCAGTGAATAATTGCTGGTATAGATATGGCAGGACGGTGATGGACAGCACACCTGATGTGACTCCTCCACTAACCCAGCCATAGTACCCGTGAGGGGCCTCTTTGTGCCTTTATGAGCGCTGAGGGCAAGGGATTTCACTACTGTAGGAAGGGTGGATGCAAAGGAAACCCAACAATGAACTAACTGCCTGGTATTGTTTTTCCTTGACCACAAAAAAACACCAGTGTTTAGCAGCTGGTGTTCAAAGTGTAGGCTGATGAAATGCTAGATATTTTCCTTTGTTACATGCAgtgtgcatacatacacacaccacaatcTCATTTTACTCGCCTGCATGGGATCAGGAGTTAGGCTCTGCTACCCACAGAAGAAAAATGTGTTTATCTGATGTAACTGAAAAGAAACCACAACGTCTACTGTCTTTCTGCTCCCTAGAGAGGAGTTTAGCTACACCACTTCAACTGAACTCCCCACTCTAATCATACTCTGCAGACCATGCTTTAAATGTTTTACTAAAATGAATCAACAAAGGCGTTACCCCAAAGAGAGCTAACGTGTCAGGTTTGCAGAGAAGGATGGTTATTCTAGTGCATCTGTTAATTATACACAGAGGTGGTAATCATTGCTCCCTACTTGTTTAAATCTTGCCACGCAGATGCACCGTGTTTGAAAGTGCTGTTGTGTCATGATGTAACCTATGTGGTAGTGTATTGTTTAAACAAAtacaacaatatatatttttagtgAGAATTCTGGAGACAAAACATTTGAGTGTGATTTGCCTCTCATACAGATCAGAGTAGCTAGGCATTGTCCAGACATGTTTATTCTTCAACTAGATTTACAATACTTACAGATTTACGGTCAAATTGACTAGACTAGGACCAGCAACCACTTAGGTGGTTTTAAGTGCTTGTATTAAGCTGTTTATGTTGATGGTTTCTACATGCCATAAACACTATTTGAGGCTATCTGGACCCTGGATTTGGAAAAATGTTCTCTCAAATATGTTCATATGCAAACATTACTGACATGATTAATCAGAAGCCTTGAAGGAAGACAAGGCATTGTGCCTTGATAGGTGAGAAATGACCCTCATCCACAGGGGTTCTTAAATGTTAATGACATTTGACAATTTATGGGATGATGGGGCACTTACAACTGGATTGCTTTGATAATTGTATCTCACATTTGACATTAGCTAGAGCCAGGCTACGGACTCCTGTAACAGTGGTTTTATGTTTTCCTCACTCCATTTCTCAAACTGTGACGCGAGGGAGTGAAGGCATACAAGAAAAGACAATTGTTGGGCTGTGGTCTTTACACATTTGTAATCTTCTTTTGATATACTAACTATTTCAACTGAAGGCTGTATTCTTCAAACTATTTATTTAAACGAGGTCTTCAGGATAGGACAATGTCACCAATCTTTGTATTGTGCATGTTGTCGTGATATTAACCTTTAATAAATAGTACTTTCTTAATAA
>XM_021558312.2
ATGTGAAAACGATTTGATTGGTCACACGTCGAGGTGTGACGTTTACAGGGACGGTAACTGCCAAGGGACAAGCTTCGAGAATGCGTTTTCTTTCCGCCCTCTTTTCCATTCTTTTCATAAAATACTAGAGTAGGCAAGAGCGAACATGGAGGAATTGAGCGCCGTAGGAGAACAGGTTTTCGACGCTGAATGCATCCTGAACAAACGACTAAGAAAGGGGAAGTTAGAGTTTCTTGTAAAGTGGAGGGGATGGTCATCCAAGCACAATAGCTGGGAGCCCCAAGCGAACATCCTTGACCCAAGATTATTGGCTGCATTTAACAAGAGtGAACAAGAAAAGGAAATCCTGATCTGCAAGAGAGGGAAAAGGCCGAGGGGGAGACCTCGAAAAGTTGTGGAAACTGTGCCTGAAGTGTCAAAGTCAAGCAGCTCTTCGTCATCGTCATCTTTGTCTGGCTCATCATCGtcatcttcttcctcttcctcctcatctgaTGAAGACGACGATGATAACAACGATAGAAAGGCAAAGCCAGGTCCCAGAACACGGGAGCTCCACCCCGTCCCTCAGAAGAAAGCACAGATTGTTGTGGCTAAGCCGGAGCCCCCGAGGAAGAAGCGAGGCAGGAAAGCACTGCCTGCAGAAATGAAGGCCATTCAACAGAACAAGGGCCAGCGCAAGATCATAAAGACAGTTGCCAAAGACTCCCCTGCAGACCTCCGAGGTGGAATCAAGAAACCCTTTCACCCAGCCAGCTTCACCTTCATGGGGTTGAACAGCAGAGGACCTCTGAGTGTCCAGGGCAGATGTTCCCTGGCCCAGGGTGGGACTACTAAAAACTCCATGAACACTGCAGCCTCTGGCCGGTCAAATACCTtagcttctctctctttcaaccAGAGATCCAACCAGAGCAAGAGTCAAGCTTCTGACTTCAAACTGTCGGTCTCTGAAGTGGACAGTGGAGCAGGTTTGGACTTAAAAACGACTGCAAGCAAATCTCCTGGCGTAGCAGCGTTGAATTTGCATAACTCCAAACTCTCAACCAGCAATAGCAACCTGCAAGGAGCTTTTCAGCCACAGCTGGGTTCCCACAATGGGCAGAAGAAACCAGATGCCCCTGGGCAAACACCAGTGCAGCAGGTACCCAATAACAAAACTGCTGCCCCCTTCTCCACTCCTAAAGGCCCTGCCAACCAAGCTGCAAGCCTTCAGGCACTAAACCTGCAGAGTGTGAACAAATCAACACAGGGCAACGGTACTCCAGGCAATGGCACCGCGCCAGTGTCCAACCTGCGAAGCACCGCCAACCCAGCACGGAAAGACACAGTTGGTCAGTATGGTCTAGAGAAAAATCCTGTCCAGAGTCCTGCCACGCCTGGTGGACAACAGCCCAGAAAGAACCATCCTGGAGTTGATAAGGTCAAAGCGGAGGAGGTCAGTGAAACAGGTGTCATGACAGAGAGGCCTGAGAGGCTGACTACAACAAGGGCCCAAGGGAGGGTTGAGAAGAGCATTGTCCAGAACCCCTCCGCAGAGGCCAGAGACATCCTGGGCAAGCGGGAGAGATCTGCCTCCAAAGACAGTGGCAAACAGGCCAAGGTCCTCCTGAGTGAGATGAGCACCGGTGAGGAGAGCACCTCAGACTCTGACCAGGATTCTCCCTACCCAAGTAACAGTCAGGACTTGTCCATCTCAGTCCAGACCGGCCAGGACTGGAAGCCCACTCACAGCCTTATCGAGCATGTGTTTGTTACTGACGTCACTGCCAATCTTGTCACTGTCACAGTCAAGGAGTCCCCAACCAGTGTGGGCTTCTTCAACATACATAATTATTGACTGAACACCGGTAATTGAGCTACCTAGCAAAGGGGCTGCAAAGTAGACAGCATAGGTCTTAAGTGAGGTATTGAATGAAGTAGATAAGTTAGAGCAGTGTTAATGCACATAAGTTTACTGCAGTGATGTGAAGTTTCCCCTTCTCTACAATGTATTAATCTGAAATCTGCAGACTTACTCTTTTGCTTTGCACCGTTAGTAAGACAATGTACTTTTGATATATTGTACACATGAAACAAAACAAGCTAATCAACTGGAGGAAAGCTTTGTCTTAAGGGAACTATTCAGGGCCAGGTGTAAACTAGATTGGTAGCTTGTTTCATTACAAACTAGTAATGCAACTCTTAGGGATGTCATTATAATGTAGCTACCTCTAGTTTAATCCAGCTCTCGTTTTGTATTCAATATTCTTGTGAAGTTCTTCTAGAACGGCAAACTTGgatgtactgttttttttttctccctcgaGTATAAGATGTTGTGACCATTACAATCAATTTGCCAATTCACATTAGTGTAAAGCACTGTAGTCTTATATGAAGTGTAAAATTCCAATGAAATGACAAATAATAGCAACATTTTCTGATTTGAAAAATGTAATTACTGGAAGAGCTCTTGAAGCTATAACATTAACAAAGAAGTTTGCAAGGCAAACCCGGTGTTGCATTGAGGACCAAGTTCTCATCGGTTGACTGCACTGAGTTTATTTCCTCAGTGCAGTCAGTCTTATCAGTGAAGTATTCCACCCAGGCTGGAGGACGAGGGAAGAAGATACACTATCTCTGTTCTCCCCTAGTGCTCAGATAAGACCGGTTACTGGCCGAGGTAACTCCTCTCCCTTCAGGTCTGTGCTCCCACAACCCCACTAGGGCATTCACTGGCGGGTGTACTCCTGTCACAACTGGTGATTATTATGGATGAGCCCAGTGAATAATTGCTGGTATAGATATGGCAGGACGGTGATGGACAGCACACCTGATGTGACTCCTCCACTAACCCAGCCATAGTACCCGTGAGGGGCCTCTTTGTGCCTTTATGAGCGCTGAGGGCAAGGGATTTCACTACTGTAGGAAGGGTGGATGCAAAGGAAACCCAACAATGAACTAACTGCCTGGTATTGTTTTTCCTTGACCACAAAAAAACACCAGTGTTTAGCAGCTGGTGTTCAAAGTGTAGGCTGATGAAATGCTAGATATTTTCCTTTGTTACATGCAgtgtgcatacatacacacaccacaatcTCATTTTACTCGCCTGCATGGGATCAGGAGTTAGGCTCTGCTACCCACAGAAGAAAAATGTGTTTATCTGATGTAACTGAAAAGAAACCACAACGTCTACTGTCTTTCTGCTCCCTAGAGAGGAGTTTAGCTACACCACTTCAACTGAACTCCCCACTCTAATCATACTCTGCAGACCATGCTTTAAATGTTTTACTAAAATGAATCAACAAAGGCGTTACCCCAAAGAGAGCTAACGTGTCAGGTTTGCAGAGAAGGATGGTTATTCTAGTGCATCTGTTAATTATACACAGAGGTGGTAATCATTGCTCCCTACTTGTTTAAATCTTGCCACGCAGATGCACCGTGTTTGAAAGTGCTGTTGTGTCATGATGTAACCTATGTGGTAGTGTATTGTTTAAACAAAtacaacaatatatatttttagtgAGAATTCTGGAGACAAAACATTTGAGTGTGATTTGCCTCTCATACAGATCAGAGTAGCTAGGCATTGTCCAGACATGTTTATTCTTCAACTAGATTTACAATACTTACAGATTTACGGTCAAATTGACTAGACTAGGACCAGCAACCACTTAGGTGGTTTTAAGTGCTTGTATTAAGCTGTTTATGTTGATGGTTTCTACATGCCATAAACACTATTTGAGGCTATCTGGACCCTGGATTTGGAAAAATGTTCTCTCAAATATGTTCATATGCAAACATTACTGACATGATTAATCAGAAGCCTTGAAGGAAGACAAGGCATTGTGCCTTGATAGGTGAGAAATGACCCTCATCCACAGGGGTTCTTAAATGTTAATGACATTTGACAATTTATGGGATGATGGGGCACTTACAACTGGATTGCTTTGATAATTGTATCTCACATTTGACATTAGCTAGAGCCAGGCTACGGACTCCTGTAACAGTGGTTTTATGTTTTCCTCACTCCATTTCTCAAACTGTGACGCGAGGGAGTGAAGGCATACAAGAAAAGACAATTGTTGGGCTGTGGTCTTTACACATTTGTAATCTTCTTTTGATATACTAACTATTTCAACTGAAGGCTGTATTCTTCAAACTATTTATTTAAACGAGGTCTTCAGGATAGGACAATGTCACCAATCTTTGTATTGTGCATGTTGTCGTGATATTAACCTTTAATAAATAGTACTTTCTTAATAA
>TU1347347
AGCGAACATGGAGGAATTGAGCGCCGTAGGAGAACAGGTTTTCGACGCTGAATGCATCCTGAACAAACGACTAAGAAAGGGGAAGTTAGAGTTTCTTGTAAAGTGGAGGGGATGGTCATCCAAGCACAATAGCTGGGAGCCCCAAGCGAACATCCTTGACCCAAGATTATTGGCTGCATTTAACAAGAGtGAACAAGAAAAGGAAATCCTGATCTGCAAGAGAGGGAAAAGGCCGAGGGGGAGACCTCGAAAAGTTGTGG
>TU1347345
gtgcatacatacacacaccacaatcTCATTTTACTCGCCTGCATGGGATCAGGAGTTAGGCTCTGCTACCCACAGAAGAAAAATGTGTTTATCTGATGTAACTGAAAAGAAACCACAACGTCTACTGTCTTTCTGCTCCCTAGAGAGGAGTTTAGCTACACCACTTCAACTGAACTCCCCACTCTAATCATACTCTGCAGACCATGCTTTAAATGTTTTACTAAAATGAATCAACAAAGGCGTTACCCCAAAGAGAGCTAACGTGTCAGGTTTGCAGAGAAGGATGGTTATTCTAGTGCATCTGTTAATTATACACAGAGGTGGTAATCATTGCTCCCTACTTGTTTAAATCTTGCCACGCAGATGCACCGTGTTTGAAAGTGCTGTTGTGTCATGATGTAACCTATGTGGTAGTGTATTGTTTAAACAAAtacaacaatatatatttttagtgAGAATTCTGGAGACAAAACATTTGAGTGTGATTTGCCTCTCATACAGATCAGAGTAGCTAGGCATTGTCCAGACATGTTTATTCTTCAACTAGATTTACAATACTTACAGATTTACGGTCAAATTGACTAGACTAGGACCAGCAACCACTTAGGTGGTTTTAAGTGCTTGTATTAAGCTGTTTATGTTGATGGTTTCTACATGCCATAAACACTATTTGAGGCTATCTGGACCCTGGATTTGGAAAAATGTTCTCTCAAATATGTTCATATGCAAACATTACTGACATGATTAATCAGAAGCCTTGAAGGAAGACAAGGCATTGTGCCTTGATAGGTGAGAAATGACCCTCATCCACAGGGGTTCTTAAATGTTAATGACATTTGACAATTTATGGGATGATGGGGCACTTACAACTGGATTGCTTTGATAATTGTATCTCACATTTGACATTAGCTAGAGCCAGGCTACGGACTCCTGTAACAGTGGTTTTATGTTTTCCTCACTCCATTTCTCAAACTGTGACGCGAGGGAGTGAAGGCATACAAGAAAAGACAATTGTTGGGCTGTGGTCTTTACACATTTGTAATCTTCTTTTGATATACTAACTATTTCAACTGAAGGCTGTATTCTTCAAACTATTTATTTAAACGAGGTCTTCAGGATAGGACAATGTCACCAATCTTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941313.1 False 4315 mRNA 0.45 5 47403774 47410322
XM_021558312.2 False 4251 mRNA 0.45 5 47403805 47410322
TU1347347 False 260 lncRNA 0.48 4 47403943 47406372
TU1347345 True 1142 lncRNA 0.39 1 47409128 47410269

Neighbor

gene id symbol gene type direction distance location
LOC110486591 LOC106606947 coding upstream 3014 47395330 ~ 47400760 (+)
LOC118938083 NA coding upstream 580796 46818538 ~ 46822978 (+)
LOC118938555 NA coding upstream 586775 46816007 ~ 46816999 (+)
LOC110486589 LOC106606959 coding upstream 731427 46571242 ~ 46672347 (+)
LOC110486588 LOC106602603 coding upstream 838102 46559808 ~ 46565672 (+)
tmem100a LOC106606948 coding downstream 57690 47468012 ~ 47471205 (+)
LOC110486595 paqrb coding downstream 71916 47482238 ~ 47505989 (+)
LOC110486605 tmem220 coding downstream 420599 47830848 ~ 47832931 (+)
LOC110486603 LOC106606941 coding downstream 422912 47833234 ~ 47836337 (+)
LOC110485199 NA coding downstream 437090 47847412 ~ 47858242 (+)
G1181480 NA non-coding upstream 23739 47379800 ~ 47380035 (+)
G1181474 NA non-coding upstream 28697 47374775 ~ 47375077 (+)
G1180845 NA non-coding upstream 471612 46929524 ~ 46932162 (+)
G1180844 NA non-coding upstream 475376 46928182 ~ 46928398 (+)
G1180779 NA non-coding upstream 584511 46815835 ~ 46819263 (+)
G1181539 NA non-coding downstream 15665 47425987 ~ 47426300 (+)
G1181547 NA non-coding downstream 19980 47430302 ~ 47430538 (+)
G1181552 LOC106580481 non-coding downstream 22073 47432395 ~ 47433957 (+)
G1181569 NA non-coding downstream 33069 47443391 ~ 47443708 (+)
G1181572 NA non-coding downstream 35232 47445554 ~ 47445922 (+)
G1181472 NA other upstream 29297 47374163 ~ 47374477 (+)
LOC110485193 LOC106601421 other upstream 1067496 46302751 ~ 46336386 (+)
G1180047 NA other upstream 1130173 46239144 ~ 46273601 (+)
LOC118936304 LOC106601427 other upstream 1227212 46173911 ~ 46176562 (+)
LOC110485192 LOC106601391 other upstream 1873646 45529398 ~ 45554103 (+)
G1181636 NA other downstream 138957 47549279 ~ 47549548 (+)
G1181955 NA other downstream 332039 47742361 ~ 47743064 (+)
G1182153 NA other downstream 709291 48119613 ~ 48122575 (+)
G1182354 LOC106601550 other downstream 1145692 48556014 ~ 48561624 (+)
G1180776 NA non-coding upstream 576260 46810424 ~ 46827683 (+)

Expression


Co-expression Network