LOC110486593 (LOC106606954)


Basic Information

Item Value
gene id LOC110486593
gene name LOC106606954
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 47432406 ~ 47433949 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558314.2
CACATTCAGATGGATATATCAATTACATCACAACCCGTGGAGGATATATCAGAGGGAGCAGGTTACTCTCTCAGCGTCCTGCAAAAGAAAACGAAACACCATGCCGATCCTCAGAGGGGAGGACTTGCAACTGGAATCACGCGTCAAAGCGCACAAGAATGAGAACCGCTGATGCCACTGATGCTGTCACAAAGCCATTTCATACAATATATTGAATTCGTGCGTAAAAGGGAATCACTGCCTATATCTAGATTTGTTTTTACGAAATAGACTATTCATCTTTACCATCTTCAATCAAGTATCGTTTGCTATGGAGTAAGCAGTCTGACTTTTAAGGACACCAACACTCAAGAAGTGAAGTTTGGCTGGATGTAACTCAAGCCGGTGCGCACTCCGCAAGAACCGGGCACAACTGTACGCAGCAGAGTAGCCTAGGCCTACCTGTTTAGCTGTATCCTATAATACTGTCTTATTGTGCGTAACGGACATGGATCAATCACAGCATTTTGTAGCAATGTACTTGCTGATGTTGTCCCTTGGACTTATAATAGAAGAAGGGCTATGCCAGCATTATTACCTCCTCCGTCCTATCCCGAGTGACAGTTTGCCACTTGTGGAATTAAAAGAGGACCCAGATCCTGTCTTTGACCCAAAAGAGAGGGACCTCAATGAAACCGAACTGAAAAGTGTATTGGGGGACTTTGATAGTCGCTTGATGTCTATTACACCACCACAGGATAAATACATTGGCAACGATGAGCTTGACGATTTGGACATTCAACAGAAGCCCAGTGGAGTGATGCCGAATGAAATCAAAGCAATGGATTTTGACGTACAGTTTGGCAAGAAGCACAAACCCAATAACAAACTTAAACGGAGGCTGCAGCAGTGGCTGTGGTCATTCTCGTTCTGTCCCGTCATTTATACATGGAACGACCTCGGCAGCAGATTTTGGCCACGTTATGTGAGAGTGGGAAACTGTCAAAGCAAAAGATCATGTTCGGTTCCAGAGGGGATGGTCTGCAAACCAGCAAACTCGACCCATTTTACGATATTGAGATGGCGATGTATACAGAAGAAAGGTGGCCTCAAATGTACTTGGATACCAGTTCAATACCCGATGATAACCGAATGCAAATGCGCCTGCTCGAACTGAAATGACTGTTTTCAAGTATAAATTATCATGACTTTGTAATTTTGTATGCACTACCGAGTGTAGGAATGTATTTTATGTATATGAGGTGCTATTCAATTATATAGGTTATTGTAAAAAGTCAGTATTACGTGTAACCAGAGTCTACCGTATTTGTGGAAAGTATTGGTTATATTTGTTGTATTTATATTGAAGATCAATGGCGCATAGGTGCCGTTTTATAAACATGTTGTTTTCTATTATGGAAAACTAATCTATCGACCTCAGATTTCATGTGGATTATGTTATCTTGCAGCTGATATACAGCTGAATATCGGTAGCCTATTTCAACGATTTATCATGTAAATTAAGAGAACTGCTATTTATTCTTTATATTCATATAATAAAATGT
>TU1347403
AGAAGGGCTATGCCAGCATTATTACCTCCTCCGTCCTATCCCGAGTGACAGTTTGCCACTTGTGGAATTAAAAGAGGACCCAGATCCTGTCTTTGACCCAAAAGAGAGGGACCTCAATGAAACCGAACTGAAAAGTGTATTGGGGGACTTTGATAGTCGCTTGATGTCTATTACACCACCACAGGATAAATACATTGGCAACGATGAGCTTGACGATTTGGACATTCAACAGAAGCCCAGTGGAGTGATGCCGAATGAAATCAAAGCAATGGATTTTGACGTACAGTTTGGCAAGAAGCACAAACCCAATAACAAACTTAAACGGAGGCTGCAGCAGTGGCTGTGGTCATTCTCGTTCTGTCCCGTCATTTATACATGGAACGACCTCGGCAGCAGATTTTGGCCACGTTATGTGAGAGTGGGAAACTGTCAAAGCAAAAGATCATGTTCGGTTCCAGAGGGGATGGTCTGCAAACCAGCAAACTCGACCCATTTTACGATATTGAGATGGCGATGTATACAGAAGAAAGGTGGCCTCAAATGTACTTGGATACCAGTTCAATACCCGATGATAACCGAATGCAAATGCGCCTGCTCGAACT
>TU1347402
TATCAGAGGGAGCAGGTTACTCTCTCAGCGTCCTGCAAAAGAAAACGAAACACCATGCCGATCCTCAGAGGGGAGGACTTGCAACTGGAATCACGCGTCAAAGCGCACAAGAATGAGAACCGCTGATGCCACTGATGCTGTCACAAAGCCATTTCATACAATATATTGAATTCGTGCGTAAAAGGGAATCACTGCCTATATCTAGATTTGTTTTTACGAAATAGACTATTCATCTTTACCATCTTCAATCAAGTATCGTTTGCTATGGAGTAAGCAGTCTGACTTTTAAGGACACCAACACTCAAGAAGTGAAGTTTGGCTGGATGTAACTCAAGCCGGTGCGCACTCCGCAAGAACCGGGCACAACTGTACGCAGCAGAGTAGCCTAGGCCTACCTGTTTAGCTGTATCCTATAATACTGTCTTATTGTGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558314.2 False 1544 mRNA 0.41 1 47432406 47433949
TU1347403 False 602 TUCP 0.46 1 47432796 47433397
TU1347402 True 433 lncRNA 0.45 1 47433471 47433903

Neighbor

gene id symbol gene type direction distance location
LOC110485195 LOC102192139 coding downstream 86472 46929363 ~ 47345934 (-)
LOC110486590 LOC105022923 coding downstream 517448 46827752 ~ 46915018 (-)
LOC118938312 NA coding downstream 871321 46553952 ~ 46561085 (-)
LOC110486586 ubald2 coding downstream 896693 46510585 ~ 46535713 (-)
LOC110486583 srsf2 coding downstream 944524 46484771 ~ 46487882 (-)
LOC110486594 LOC106601485 coding upstream 26487 47460436 ~ 47466735 (-)
LOC110486596 LOC106606950 coding upstream 74975 47508924 ~ 47522717 (-)
LOC110486597 LOC106606951 coding upstream 131308 47565257 ~ 47597295 (-)
LOC110486599 NA coding upstream 173724 47607673 ~ 47611494 (-)
LOC110487550 LOC106601487 coding upstream 178332 47612281 ~ 47614372 (-)
G1181548 NA non-coding downstream 1706 47430475 ~ 47430700 (-)
G1181529 NA non-coding downstream 13645 47418494 ~ 47418761 (-)
G1181524 NA non-coding downstream 19443 47412694 ~ 47412963 (-)
G1181519 NA non-coding downstream 20944 47411179 ~ 47411462 (-)
G1181512 NA non-coding downstream 22129 47409130 ~ 47410277 (-)
G1181559 NA non-coding upstream 1831 47435780 ~ 47436005 (-)
G1181700 NA non-coding upstream 49973 47483922 ~ 47484677 (-)
G1181709 NA non-coding upstream 74244 47508193 ~ 47508798 (-)
G1181720 NA non-coding upstream 94329 47528278 ~ 47528543 (-)
G1181722 NA non-coding upstream 97691 47531640 ~ 47531875 (-)
G1179621 LOC106607015 other downstream 1899744 45531858 ~ 45532662 (-)
G1179619 LOC106601391 other downstream 1902292 45529436 ~ 45530114 (-)
zgc:171844 LOC106607059 other downstream 2239101 45182660 ~ 45193315 (-)
LOC110486618 LOC106606909 other upstream 569082 47999581 ~ 48015951 (-)
G1183013 NA other upstream 591152 48025101 ~ 48025776 (-)
G1183126 NA other upstream 825575 48259524 ~ 48259989 (-)
G1183190 NA other upstream 927649 48361598 ~ 48365100 (-)
LOC110486593 LOC106606954 other downstream 74 47432406 ~ 47433949 (-)

Expression


Co-expression Network