LOC110486594 (LOC106601485)


Basic Information

Item Value
gene id LOC110486594
gene name LOC106601485
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 47460436 ~ 47466735 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558315.2
CGCACACACTGAGTCCTAGATCACATGATCAAATGTCAGAGCACGGTTTGAAAACATGTCGCTGCACTTTACAGATGAGGAATTTCTGGAGGCATGGAAAGAATTAGATAAACCTCAATTGGAGGGGGGGGTGGGAGTTTTTCACAGAGACAATGGGTGTCAAAATTTACCGGCTGTATGACAAGGAAACTGGACTTTATGAGTACAAAGTCTTTGGAGTGCTTGTCACCTGCACTCCAGAACTGTGTGCTGATGTCTACATGGACTTGCCCTATCGGAAACAATGGGATGGATATGTCAAAGAGCTGCATGAGAAGGACTATGATGGTCATTCAGCAATCTACTGGGAGGTGAAATACCCTTTTCCTCTGTCAAACAGAGACTACGTGTACGTCAGGGAGCGGAGGGACGTTGACGTGGACAGCAGGAAGATCTGGGTGGTCCTGGCTAAGAGCTCCCCACAGTCCCCTTTACCAGAGAAGAGTGGGGTGCAGCGAGTGAATGACTACAAGCAGACTGTGGCCATGGAGAGTGATGGTGCCTGTGGCGCTAAAGTCTTCATGAATTACTTTGATAACCCTGGTGGTAATATTCCAACCTGGCTTGTGAACTGGGCAGCCAAGAGCGGAGTGCCTGCCTTCCTTACAGACATGCAGAAGGCCTGTGGCAATTACTCAAACTACTGCCAGAAGAACAAGAAATGAACGCCCTTTGTGGGAAGTCGCATCAAAGCCACAAGGATTGCATTTTTCAGCCCATCGTTCAATAAAGTCTACACTTAGTGTCTGAGGGCCATTGTGGGTGTTTTGGGTATGGTTGGAGACTTATTACAAAGTCAATAGGTGAAAGTGGTGTTGGTGTAATCTGCAGCTAGATGTGGTACTGACTGGGGCATGTACTGTATTTTAGTTATTAGTTgtataaaaaatatgtatttcaatTGAAGTTATCTGGTACTGAATTCCTACTCCTATGTAAATGTTGTATTTTGGGCATGCCCACAGTAAGGGCTTGGATGAGATCTGTAGTGATCTACCCCCTGTTTTAACGAGTACTGTTTCTTTGACTACAATGGCTTTTCCTTTTATTTTCCTGTTGTTTGTTATGGTCAAATGTATGTTGTTTTTTAAATCCtacattgttttatttatgaATGTTCAGCCAATGAATGATATGCATTTTTGCACTTGTGATTAAGCACTGAAATCAAATCAACTTCCAAACCTTAATGTCTATAGGAAAAAATGCAGTGCTGTAATTCTACTGTTCATCAGCCTATTAATTTGTGAATGATTAGTTTCTCAGCAGCTCTATTGAGGAAGGATTTCTGTACTCTACAATGCAACGTTGTTGCTTAGGCAAGCAAGGCTGAATCAAAAGCACACTAGATTTTTAATTTGTATTTCCCTATTGGACATTTTGaatgtacataaaaaaaaaaaaaacggatttTGTCCTATCATTAATAGTTGCCTGGAGTGATTTGTTGTGATACTTGAAATTTACAAAAACACGATAATTAAATAGTTTAAGTTAATTATTCATATGTTGAATCTTcgagagctacagtaggcctatacctctTTATCCTTGTGTGGTTGCAATTAGGCATCCAATTCTATGGAAGTAATACACACTGTATCACCATCTAATACATATCAATAAAAATGACGGCTGAGATGAAA
>TU1347562
GAAAACATGTCGCTGCACTTTACAGATGAGGAATTTCTGGAGGCATGGAAAGAATTAGATAAACCTCAATTGGAGGGGGGGGTGGGAGTTTTTCACAGAGACAATGGGTGTCAAAATTTACCGGCTGTATGACAAGGAAACTGGACTTTATGAGTACAAAGTCTTTGGAGTGCTTGTCACCTGCACTCCAGAACTGTGTGCTGATGTCTACATGGACTTGCCCTATCGGAAACAATGGGATGGATATGTCAAAGAGCTGCATGAGAAGGACTATGATGGTCATTCAGCAATCTACTGGGAGGTGAAATACCCTTTTCCTCTGTCAAACAGAGACTACGTGTACGTCAGGGAGCGGAGGGACGTTGACGTGGACAGCAGGAAGATCTGGGTGGTCCTGGCTAAGAGCTCCCCACAGTCCCCTTTACCAGAGAAGAGTGGGGTGCAGCGAGTGAATGACTACAAGCAGACTGTGGCCATGGAGAGTGATGGTGCC
>TU1347564
AGTTTTTCACAGAGACAATGGGTGTCAAAATTTACCGGCTGTATGACAAGGAAACTGGACTTTATGAGTACAAAGTCTTTGGAGTGCTTGTCACCTGCACTCCAGAACTGTGTGCTGATGTCTACATGGACTTGCCCTATCGGAAACAATGGGATGGATATGTCAAAGAGCTGCATGAGAAGGACTATGATGGTCATTCAGCAATCTACTGGGAGGTGAAATACCCTTTTCCTCTGTCAAACAGAGACTACGTGTACGTCAGGGAGCGGAGGGACGTTGACGTGGACAGCAGGAAGATCTGGGTGGTCCTGGCTAAGAGCTCCCCACAGTCCCCTTTACCAGAGAAGAGTGGGGTGCAGCGAGTGAATGACTACAAGCAGACTGTGGCCATGGAGAGTGATGGTGCC

Function

NR:

description
phosphatidylcholine transfer protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558315.2 False 1685 mRNA 0.41 6 47460436 47466735
TU1347562 False 493 TUCP 0.49 4 47462281 47466686
TU1347564 True 407 TUCP 0.49 4 47462281 47466600

Neighbor

gene id symbol gene type direction distance location
LOC110486593 LOC106606954 coding downstream 26487 47432406 ~ 47433949 (-)
LOC110485195 LOC102192139 coding downstream 114502 46929363 ~ 47345934 (-)
LOC110486590 LOC105022923 coding downstream 545478 46827752 ~ 46915018 (-)
LOC118938312 NA coding downstream 899351 46553952 ~ 46561085 (-)
LOC110486586 ubald2 coding downstream 924723 46510585 ~ 46535713 (-)
LOC110486596 LOC106606950 coding upstream 42189 47508924 ~ 47522717 (-)
LOC110486597 LOC106606951 coding upstream 98522 47565257 ~ 47597295 (-)
LOC110486599 NA coding upstream 140938 47607673 ~ 47611494 (-)
LOC110487550 LOC106601487 coding upstream 145546 47612281 ~ 47614372 (-)
LOC110486600 LOC106606953 coding upstream 171839 47638574 ~ 47707551 (-)
G1181559 NA non-coding downstream 24431 47435780 ~ 47436005 (-)
G1181548 NA non-coding downstream 29736 47430475 ~ 47430700 (-)
G1181529 NA non-coding downstream 41675 47418494 ~ 47418761 (-)
G1181524 NA non-coding downstream 47473 47412694 ~ 47412963 (-)
G1181700 NA non-coding upstream 17187 47483922 ~ 47484677 (-)
G1181709 NA non-coding upstream 41458 47508193 ~ 47508798 (-)
G1181720 NA non-coding upstream 61543 47528278 ~ 47528543 (-)
G1181722 NA non-coding upstream 64905 47531640 ~ 47531875 (-)
G1181727 NA non-coding upstream 68809 47535544 ~ 47535774 (-)
G1179621 LOC106607015 other downstream 1927774 45531858 ~ 45532662 (-)
G1179619 LOC106601391 other downstream 1930322 45529436 ~ 45530114 (-)
LOC110486618 LOC106606909 other upstream 536296 47999581 ~ 48015951 (-)
G1183013 NA other upstream 558366 48025101 ~ 48025776 (-)
G1183126 NA other upstream 792789 48259524 ~ 48259989 (-)
G1183190 NA other upstream 894863 48361598 ~ 48365100 (-)
G1183192 NA other upstream 897321 48364056 ~ 48376966 (-)

Expression


Co-expression Network