LOC110486595 (paqrb)


Basic Information

Item Value
gene id LOC110486595
gene name paqrb
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 47482238 ~ 47505989 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558316.2
AGGCGACCGTCTTCCATTCTCCGTCCCATCCACCAGCTGTTTCTTCTGGGCCTGTGGGCCGCACAGTATGAGGCAGCTACCATGGGCTTTAAGGAAAACTTCTCGGAGATTGATCCTGTCACTTTGAACCTCTGCATCCTTATCGCCAGCTATGTTATCTTGCTTCTGGTGTTCCTGATATCTTGTATAATGTATGACTGCCGGGGCAAGGATCCAACCAAGGAGTACGCGCCGGACCCTGTGCCGACCCAATCCCCCATCAGACTGGTGGTGATGCAGCAGACCACCCCTTCTCCGCAACATCAACGCTGGGACCAGACCAATATGGTCACCTCATATGAGCCTCAGCCCAGTCCAGACTTCAGGGAGAAGAAGAGCACCATGGTCTAGATTCTAGAAGGGCTACTGTGGTGCTGAATAACTCAGTCCACAACCCGTTGGAATTATCGCAGCGGAATAAACTTTTGTacatatatgttttttttaaatctgtttctacatttattttttagattGTATTTTTCCCTGGTGGCCAGGACAATGCTAGGATTGGACCTGCAGAAGACCAGTCTGAGACGGTTCATGAACAGGCGGGCCAGTGCTAACTGCCGCTACCAGCCCACCTGCTATGAGCATGCTGCAAACTGCTATACTCACGCGCTACTCATCGTACCAGCCATTGTGGGCATGGCCCTGCTGCACCGTCTCTCAGACGACCGCTGGGAGAAGATCACAGCCTGGGTGTACGGCATGGGCCTGTGTGCCCTCTTCCTGGTCTCCACTGTGTTCCACATCATCACCTGGAAGAAGAGCCACATGAGGTCTGTGGAGCACTGCTTTCATATGTGTGATAGAGTGGTCATCTATTTCTTCATCGCTGCCTCCTACACACCATGGTTGAATCTTCGTGAGCTTGGCCCACTCGCAGTTCACATGCGTTGGTTTGTATGGCTAATGGCTGCGGCAGGAACGATATACGTCTTCAACTACCACGAAAAGTATAAAGTTGTTGAGCTCGCCTTCTATTTGACTATGGGTTTTTTCCCTGCGTTGGTTGTGACATCAATGAACAACACGGATGGACTGTACGAGTTGGCCTGTGGGGGACTCATCTATTGCCTGGGCGTGATCTTCTTCAAGTCGGACGGGGTCATCCCGTTTGCCCATGCCATCTGGCACGTGTTTGTGGCGCTGGCTGCAGCCGTGCACTACTACGCTATCTGGAAGTACCTCTACAGGAGTCCCCCTGCTAATACTATTCGGGACGCCTGACCCCCCCCACCGCATCAAGTAGGCTAACTGAAAACACATTGCCCTCCAGTGCCTCTCGACATAGGCACCAGCAAATAAAGACTCCCACAACTGCCCACCGAGGATGCAACCACAGCCGGAAAGTTTACGAAAATGACCATGCATTGTTTACTGTTTCCAGGTAGGGAACAGTTTTTCTGTTTATCTTTGACTGTACAAATGTTGAACAAAGGTTATTTGTAATTCTGTTTGTGTACAACTGTTATTCCGTTGGAACCCCCAAAACAACTCAAATTATCAACTTTTGACTTCCATTTGGAAATTGTTCTCATCTTCTACACATTGGGCTGAGTTGATATCAGTGCTTTGTATCACTTCACATTCCATACTTAGTATCTTCTGTCAGTTGTAGTGATTTTGTCAGTCATCTTATTGATTGGAAAGCAGTTGGGAAGGACATTCAATAGAGTTGGGCTTTTCACTCTGAGGTAAATGTGCATGGTACACATTGGACACACAATGTCTGAATCAGTATTTATCAGTATCTAAGTGCAGTCTCATTTTTCAGAAGCACTTTTGTATGATAAGAACCACAAAGAACCATTGGATGTGATGTTTAATAAGTACTCTGATTTGTGTAATTGTATTCTTTCCCACAAATATGGAGCCCTCAGAAGGTGAGTATTTGAGTTGGTATAGCTTTTAAAAAGGGTCTCTGTGATTGGACTGAACTTCCAGAAAGATacaatatctacagtacatctgaGATGTCCTGTACTTCTGCACATATTACTGCTGACACTTTAATGGTATAGTAGATAGTTCCATTATATCACACACTTCCTGATTTAAAAACTCCTCACATCCTAAATTACCCTTCCGTTCTTTGTATTCATTTGAACCTGTTATGTGTTTTTGGATCTTCAATGGTACTCCATTCCCTACCTTTCTTTTGAGGAGTATTTGCCATTTCAGTTGAGAAACTATGAAGACCAGTACCATTATACTATGAAGTTGAATTGATTGAGAAACGTGTCATGTACAACCAACCCTATAATGATTTTTAATGGTTGGTAGATTTATCCATTTTTAGCTTTCTCACTTGTTTCTCAAATTGCCAGAGACAGTTTTTGGAACAGGTGTTCACAAATGTTCCTTGTGTAAAACACTGTACAGCCCTTGGTGAGCATGCCTTTTTGTTTTCCCCTCCCTGACATTTTGTTAGCTATGCTAAGTGGAGAAGTCAGATGATTTTTGTTATGGATTGTAGCCATTCTGAAATGTCTTGCTCCCTTTACCAcaatgttttgtaatatttgtacATTCTGTTTTGGCACATGATCCTGTACTGGCCTTTTTAGGGAAAACATCTGCTTCTTATTAACTCTCTACTTTATCCATTGGGTGTATTGGTGCTGTACATATAGAAAACAATGTTCACTCTGTAAGATAGGTTACTAATGTGTTGATGAAAAATAAATGCCCTCAACGTC
>XM_021558317.2
TTGATGTCCCACACTTTTAGTGCTATTATTGGTTCAAGCATCCGTCATTCAAAATCTCTTCGCATGaactaaatacattttaatcgtGAAAAAGGGAACAACGCCGGTGTCTACAAGGGGACACAAGTGTTAGGAGGATATGTCTTTGCTAAATTATTGTATTAATGTAATCGATTGAAGCTAGTTTATATTTGCAGCACAATGGTATTAAGGAAAATACTAAAATAGTGTATCGATTTGGACTGGGGGTATCTTATTATGTGTACAGATTACTGATTAGTTGATGACGTTAGCTGGGCCTTCAATTTCTCTTGTTTTGGCTAGCTTTCTAATTTCCCATTTGGCTAGTTTGCGGATTTTCTATTTGACTGTAGCTCGCTAGCTTAATCTTACTTCGTGATTTCCTCCCTTCGTTTTGCGTGAAGGCATTGAAATGAAGAGAGTGAACAGCCTTCAAAGGTTCATGAACAGGCGGGCCAGTGCTAACTGCCGCTACCAGCCCACCTGCTATGAGCATGCTGCAAACTGCTATACTCACGCGCTACTCATCGTACCAGCCATTGTGGGCATGGCCCTGCTGCACCGTCTCTCAGACGACCGCTGGGAGAAGATCACAGCCTGGGTGTACGGCATGGGCCTGTGTGCCCTCTTCCTGGTCTCCACTGTGTTCCACATCATCACCTGGAAGAAGAGCCACATGAGGTCTGTGGAGCACTGCTTTCATATGTGTGATAGAGTGGTCATCTATTTCTTCATCGCTGCCTCCTACACACCATGGTTGAATCTTCGTGAGCTTGGCCCACTCGCAGTTCACATGCGTTGGTTTGTATGGCTAATGGCTGCGGCAGGAACGATATACGTCTTCAACTACCACGAAAAGTATAAAGTTGTTGAGCTCGCCTTCTATTTGACTATGGGTTTTTTCCCTGCGTTGGTTGTGACATCAATGAACAACACGGATGGACTGTACGAGTTGGCCTGTGGGGGACTCATCTATTGCCTGGGCGTGATCTTCTTCAAGTCGGACGGGGTCATCCCGTTTGCCCATGCCATCTGGCACGTGTTTGTGGCGCTGGCTGCAGCCGTGCACTACTACGCTATCTGGAAGTACCTCTACAGGAGTCCCCCTGCTAATACTATTCGGGACGCCTGACCCCCCCCACCGCATCAAGTAGGCTAACTGAAAACACATTGCCCTCCAGTGCCTCTCGACATAGGCACCAGCAAATAAAGACTCCCACAACTGCCCACCGAGGATGCAACCACAGCCGGAAAGTTTACGAAAATGACCATGCATTGTTTACTGTTTCCAGGTAGGGAACAGTTTTTCTGTTTATCTTTGACTGTACAAATGTTGAACAAAGGTTATTTGTAATTCTGTTTGTGTACAACTGTTATTCCGTTGGAACCCCCAAAACAACTCAAATTATCAACTTTTGACTTCC
>XM_036941315.1
TCGCATGaactaaatacattttaatcgtGAAAAAGGGAACAACGCCGGTGTCTACAAGGGGACACAAGTGTTAGGAGGATATGTCTTTGCTAAATTATTGTATTAATGTAATCGATTGAAGCTAGTTTATATTTGCAGCACAATGGTATTAAGGAAAATACTAAAATAGTGTATCGATTTGGACTGGGGGTATCTTATTATGTGTACAGATTACTGATTAGTTGATGACGTTAGCTGGGCCTTCAATTTCTCTTGTTTTGGCTAGCTTTCTAATTTCCCATTTGGCTAGTTTGCGGATTTTCTATTTGACTGTAGCTCGCTAGCTTAATCTTACTTCGTGATTTCCTCCCTTCGTTTTGCGTGAAGGCATTGAAATGAAGAGAGTGAACAGCCTTCAAAGCTACTCATCGTACCAGCCATTGTGGGCATGGCCCTGCTGCACCGTCTCTCAGACGACCGCTGGGAGAAGATCACAGCCTGGGTGTACGGCATGGGCCTGTGTGCCCTCTTCCTGGTCTCCACTGTGTTCCACATCATCACCTGGAAGAAGAGCCACATGAGGTCTGTGGAGCACTGCTTTCATATGTGTGATAGAGTGGTCATCTATTTCTTCATCGCTGCCTCCTACACACCATGGTTGAATCTTCGTGAGCTTGGCCCACTCGCAGTTCACATGCGTTGGTTTGTATGGCTAATGGCTGCGGCAGGAACGATATACGTCTTCAACTACCACGAAAAGTATAAAGTTGTTGAGCTCGCCTTCTATTTGACTATGGGTTTTTTCCCTGCGTTGGTTGTGACATCAATGAACAACACGGATGGACTGTACGAGTTGGCCTGTGGGGGACTCATCTATTGCCTGGGCGTGATCTTCTTCAAGTCGGACGGGGTCATCCCGTTTGCCCATGCCATCTGGCACGTGTTTGTGGCGCTGGCTGCAGCCGTGCACTACTACGCTATCTGGAAGTACCTCTACAGGAGTCCCCCTGCTAATACTATTCGGGACGCCTGACCCCCCCCACCGCATCAAGTAGGCTAACTGAAAACACATTGCCCTCCAGTGCCTCTCGACATAGGCACCAGCAAATAAAGACTCCCACAACTGCCCACCGAGGATGCAACCACAGCCGGAAAGTTTACGAAAATGACCATGCATTGTTTACTGTTTCCAGGTAGGGAACAGTTTTTCTGTTTATCTTTGACTGTACAAATGTTGAACAAAGGTTATTTGTAATTCTGTTTGTGTACAACTGTTATTCCGTTGGAACCCCCAAAACAACTCAAATTATCAACTTTTGACTTCC

Function

NR:

description
monocyte to macrophage differentiation factor isoform X2

GO:

id name namespace
GO:0019835 cytolysis biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K11068 hlyIII; hemolysin III

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558316.2 False 2744 mRNA 0.44 7 47482238 47505989
XM_021558317.2 False 1445 mRNA 0.46 7 47488083 47504809
XM_036941315.1 True 1304 mRNA 0.46 6 47488142 47504809

Neighbor

gene id symbol gene type direction distance location
tmem100a LOC106606948 coding upstream 11033 47468012 ~ 47471205 (+)
LOC110486592 LOC106606958 coding upstream 71916 47403774 ~ 47410322 (+)
LOC110486591 LOC106606947 coding upstream 81478 47395330 ~ 47400760 (+)
LOC118938083 NA coding upstream 659260 46818538 ~ 46822978 (+)
LOC118938555 NA coding upstream 665239 46816007 ~ 46816999 (+)
LOC110486605 tmem220 coding downstream 324932 47830848 ~ 47832931 (+)
LOC110486603 LOC106606941 coding downstream 327245 47833234 ~ 47836337 (+)
LOC110485199 NA coding downstream 341423 47847412 ~ 47858242 (+)
LOC110486607 LOC106601502 coding downstream 369417 47875406 ~ 47912448 (+)
LOC110486609 LOC106601450 coding downstream 421058 47927047 ~ 47932749 (+)
G1181587 NA non-coding upstream 23543 47458463 ~ 47458695 (+)
G1181586 NA non-coding upstream 23826 47458193 ~ 47458412 (+)
G1181579 NA non-coding upstream 34625 47446992 ~ 47447613 (+)
G1181572 NA non-coding upstream 36316 47445554 ~ 47445922 (+)
G1181569 NA non-coding upstream 38530 47443391 ~ 47443708 (+)
G1181611 NA non-coding downstream 282 47506271 ~ 47506726 (+)
G1181612 NA non-coding downstream 1506 47507495 ~ 47507774 (+)
G1181606 NA non-coding downstream 2962 47508951 ~ 47512098 (+)
G1181615 NA non-coding downstream 17235 47523224 ~ 47523453 (+)
G1181616 NA non-coding downstream 17873 47523862 ~ 47524063 (+)
G1181472 NA other upstream 107761 47374163 ~ 47374477 (+)
LOC110485193 LOC106601421 other upstream 1145960 46302751 ~ 46336386 (+)
G1180047 NA other upstream 1208637 46239144 ~ 46273601 (+)
LOC118936304 LOC106601427 other upstream 1305676 46173911 ~ 46176562 (+)
G1181636 NA other downstream 43290 47549279 ~ 47549548 (+)
G1181955 NA other downstream 236372 47742361 ~ 47743064 (+)
G1182153 NA other downstream 613624 48119613 ~ 48122575 (+)
G1182354 LOC106601550 other downstream 1050025 48556014 ~ 48561624 (+)
G1182541 NA other downstream 1440760 48946749 ~ 48947969 (+)

Expression


Co-expression Network