LOC110486596 (LOC106606950)


Basic Information

Item Value
gene id LOC110486596
gene name LOC106606950
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 47508924 ~ 47522717 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558319.2
AGTCGGTATTCAAGTATTTGCCAAAGGTTTGACGTCATGTACATAGGTGTCCACAAATGGATTGTGAACCATCTTGAGCTGCACATCCAGTTAGTTCTCTGCCTTCTCGAACTAGCGTCGTTCGACGAAAACCGTAATTGTTATTTTCTGCGTGGATATCAATTTCTCGGTCTGAACTACAGGTTGGGTCAAGCATTGACGTTTGGTGTTTGTTTAACATATTTTCAAACGTGGGTCTTCTTTTGGAATAACAGCAATTGTACGCTATACTATCGTCCTCCAGACCAATGGAGAAAATGGCCAGACCTGTTCCTTTAAACTCATCTTTCCAAACTCCAACTAATGGCGTACTGAAATCCCTGTTGGAGAATCCAATGAAGCTGCCATTTCATCATGAAGGTTTTGGAAAAGAGAAGAATGCGAAAGAGAAAAAGTTGGATGAGGAAGGCGGTGCCAATACTCCACAGTCGGCCTTCCTAGGGCCAACCTTGTGGGACAAGACCTTGCCATATGATGGGGACAACTTTCAGCTAGAGTACATGGACCTGGAAGAGTTTCTGTCAGAGAATGGCATCCCCGCAAACCCAGCTCAGAATAACCTAAACCAGCCACAGCAGTCCCGGCAGCCCACTATCCAGCAGGTTTCCCCAGCACCCCCCATACCCTCTGTGGTCGACCTCAGCAGCCACGCCACTACCTCCGTTCATACAGCCATGGTCTCCCAGAACTGTCTCCAGAGCCCCCCAGCCAGAGCAGTGCTGCCATCAGCTGCCAGGAACACCCCCAGCCCCATCGATCCAGAGTCTATTCAAGTTCCAGTGGGCTACGAGCCCGACCCTGCAGACCTGGCTCTGTCCAGCGTACCCGGACAGGAGATGTTTGACCCCCGAAAACGCAAGTTCGCCCCAGAGGAGCTCAAACCACAGCCCATGATCAAAAAGGCACGCAAGATCTTCATCCCTGAAGATCTCAAGGATGACAAGTACTGGGCCAGACGCAGAAAGAACAACGTAGCAGCCAAAAGATCACGAGATGCCAGGCGACTGAAGGAGAACCAAATTGCCATCCGGGCTGGTTTCCTAGAGAAGGAGAACGGTGCACTTCGCTCAGAGGTGGCCGACTTGAGGAAGGAACTGGGTCGCACCAAAAACATTGTGGCCAAATATGAGGCTCGTCATGGGCCCCTGTGAACCTCCCCAAACCTCCCCAACGTCCGCGCCACACccttccctctcaccccctcACCCAAGAGATTGAAGGACAATGTGCCTCCCTTTTGGTGGCACTGGCCCCCACACACACCAGCCCCTCACCCCTGTACATGATAATCCTATAAGATTCTATCATTTTGAATTCTGTCACTGGCATCTGATTGTTTGTTCCTTTTTGTTTTCTCCCTCATCCTTCATGTACAaacatgtatgtacagtatgcacacacactTTCCTCTTTCAAGTACTACAAGGCACTTTGAGTGTTATTGAGCCAACAACCTACTCTCCGGATCCCTACCCTGTCCCCTCCTTCCACTGTTCATTTTGTAAATGATGCCATGAGGTTTGTTTTCCCCCTTTCTCACCTGTTTTATACGTGTGATCAGGACTGAGAGCTGTTGTAATGTATCTCCCTCCCCATCCTTATGTTCTTCCAGTGCTGTTTTCAGAGGGATTCTCCTCCTTCCTAAGACCCTGTTCCTGTCTGTTGTTATGTCCTGTACCTTCCTGTAGCATCCTTTCTCAAACGGTTTGTACCATACATTCGTATTGCAATTCGTTTTGTTATTGTACTTCCGTTAATATTATACATTTTCGTGTCCATTTTTGTTCTATTGTGGCGCTGTACCATCAGTTCATCACATCAGGACTATAAGCTACTCTTGTGATTTTAATATTTTCTTTGTTAGCACTTAACCTCTCTCTCAAACCTCAGTATAACTGTACAGTTGAAAAGAAAAACCAGCGATTCTTTTCTATCACACATTGAGCAATAATCTTTTCCAAAGCTATATTAATTAATGCTACCAAGTTTTTCCTCCCACACCGATTCCCCAATCAGAGCACCTCTTGGTCTCCAGTAGAACCCACAACCCTCTTGCCTCGCGTTGCACGGCACGGTCATTTTCTGTTGGGAGTTGCACCAGCTAGCATGGTGATGGTGGACAGATTTCCCACCCTGTGCTCAGTGGTCTCTTTGCTGCAGCCTGTTCCACAACCACAACTCCGCTAACCCTCTCTGCACCAATCTTCTAACACGTGTCACAATCTGCCCTGGTGCAATGTTCCTCAGTCTAATCTGCCTGATATTTATGTATCTTTTCTGTTAAGGACAGATTAATTTTTTGGAATATTGAATTGTTATTATTATGACTTCTATTTGTGTCGTTGATATTGTTGTTCTTATTATCATCTCAGCATTTTTATTTGAATATTTCAGCATGATTTCTCAGAACACAAACCTCAAGCTAATCGCAAAGTGGTTGAATGATTTCCTTTTTATTTAGCATGATTAACAAGCGTGGTTCTTTTAATAATCAATAGAGATATCTGTATTTTTGTAGATATGTGTTTGCCTTCTGTAAGATGGCTGTATGAATGTAAAAGATGTTGGGGGGAAAAAAGTTGAATGGTGTTGTCCAGTACTGTGGTTATCCCAAACAATTAGTTTACTACAAACCAAAATATTCAGTACAGAGATGATACATTGGTTATAAGAGATGTTTATATAAAGCTATTCTATATGTGTTTTTTTGTACAGTATTTTTCCTATACATTACTGGCTATGTATTTTAAAGGCACAGAATCcagaatattattattattattattattatattaaagaATACAAACACATTACTCAAAGAACCAATATAGTAGTGTTTTGATATCTTAACCATAATAATGTGGTAGTTTTACAGAGATTCCTCCAAATCCAGCAGCAGTAACGGATACTGTTGGGCATTATTGGAAAGACACTCCTGTATCCTGGTTATATACTATAGATTTAGCCGTCAGTAACCTTTAGTTCCTTGTGTCATGGAATCGTAGTGCTTTAAGCTCGAGTCTCCCCAACGTTAACATGAAATAAAGTTGTGAGTATGGAGGACGGAATGTATGGAATGATCTTTAATCGGTTTCTGTAGAGACCCACTATTGCAAAAGAGATGCCAATACTTGCTTGCTATTGATTGTCCCCGATGTCACCACTAGGTGTCTCAATTAGACTCCTGTTATGGGTCCCTTCACTCAGAGATGACCAAAATATGTCACCGGAGTCCTTTGATGGTAAAACTGAAAAGGTTTACCTTTAGTCATATTCTGATATAAACTAATATGACTAATATTTGGAGACATCTATGCTCACTAGTTAGAACGATGTTACAATGAAGGGGAGGGCCATTTCAGGTTACTGTAGCTGCTGTTTGTCTGCTTGTTCGACCTTTGCAGTCTAGTAAGCCCACTGCCTGAGTGATATTACTCTCAATGACACTGCATAGCTTACTGAAATCTCTCTAATTCTGCTATAATACTTTCACAGTTGACCAAATACAGTGTAGTGTTCCTTACCTGTTGCAGATCATGGTCCAGCCAAGGTGAGAGTAGATATGTTTTGGCTGTAGAGAAACGGCTGGAGGTGATTTTCCTTATTCACATTTCTATAGCCCATCCGTACAGATATGGGTTTTGTTAGCTGTGTGTCCATGTACTTTAACATGCTATTCTGTACCATATGAAAGAATAGGATAAAGCCATTAACAGTCCACACATTGCCCACATACCTCCCTGTAGAGTGACTTCACTACCTCACCCATGAATGGAAAAAAGTAACCATAATTCTGAGTCTATTCCAGTGCCTTGAATACACTGACTGTTCCTCAGTCTCTCAGCGACGTATTGTCATTATCACCACTTGAATAGGTTCAGATCTAATGCAGCAAATATTCTATATATTTACAATTTTCTTTTTACTTATTTAAAACACAATTAACTAATTACCATTGTATTAATGGCAACACCAATGGACTGTTTCACAGAGGGTACATAGATACACAATGAAAGGAGTATTCTGTCTTGTTTGTCATGGAATGAATGCATAACATATATTCAGGCCTTGGCCTCCCGATCTGTAATTCATAGTGTCTAATAAAGTATTTTCTGTTTCTTTTGA

Function

NR:

description
hepatic leukemia factor-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09057 HLF; hepatic leukemia factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558319.2 True 4164 mRNA 0.42 4 47508924 47522717

Neighbor

gene id symbol gene type direction distance location
LOC110486594 LOC106601485 coding downstream 42189 47460436 ~ 47466735 (-)
LOC110486593 LOC106606954 coding downstream 74975 47432406 ~ 47433949 (-)
LOC110485195 LOC102192139 coding downstream 162990 46929363 ~ 47345934 (-)
LOC110486590 LOC105022923 coding downstream 593966 46827752 ~ 46915018 (-)
LOC118938312 NA coding downstream 947839 46553952 ~ 46561085 (-)
LOC110486597 LOC106606951 coding upstream 42540 47565257 ~ 47597295 (-)
LOC110486599 NA coding upstream 84956 47607673 ~ 47611494 (-)
LOC110487550 LOC106601487 coding upstream 89564 47612281 ~ 47614372 (-)
LOC110486600 LOC106606953 coding upstream 115857 47638574 ~ 47707551 (-)
LOC110486601 rnz2 coding upstream 283507 47806224 ~ 47815064 (-)
G1181709 NA non-coding downstream 126 47508193 ~ 47508798 (-)
G1181700 NA non-coding downstream 24247 47483922 ~ 47484677 (-)
G1181559 NA non-coding downstream 72919 47435780 ~ 47436005 (-)
G1181548 NA non-coding downstream 78224 47430475 ~ 47430700 (-)
G1181720 NA non-coding upstream 5561 47528278 ~ 47528543 (-)
G1181722 NA non-coding upstream 8923 47531640 ~ 47531875 (-)
G1181727 NA non-coding upstream 12827 47535544 ~ 47535774 (-)
G1181735 NA non-coding upstream 20775 47543492 ~ 47543735 (-)
G1181687 NA non-coding upstream 40354 47563071 ~ 47563563 (-)
LOC110486586 ubald2 other downstream 973279 46510585 ~ 46535713 (-)
G1179621 LOC106607015 other downstream 1976262 45531858 ~ 45532662 (-)
LOC110486618 LOC106606909 other upstream 480314 47999581 ~ 48015951 (-)
G1183013 NA other upstream 502384 48025101 ~ 48025776 (-)
G1183126 NA other upstream 736807 48259524 ~ 48259989 (-)
G1183190 NA other upstream 838881 48361598 ~ 48365100 (-)
G1183192 NA other upstream 841339 48364056 ~ 48376966 (-)

Expression


Co-expression Network