LOC110486599


Basic Information

Item Value
gene id LOC110486599
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 47607673 ~ 47611494 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468092.2
CGGCTCTCAAAGCAGGTGTGCTCTCTGGGTGCGAGAAGAATAGAAGGAACAGAATAGACGCACCTTCCGTTATTTTCAGGGTGTATCGACACAATGATGGACCTTAGACGCATAGGCGGGTGTGTGCCGTTATTTTTTCTGGCTATTGGTTTTGATGTTATTGGTTTTATTATCCTGTTCATTGGAATTTTTGCCAATTTGCGTATCGATGGCAGGTTTTATGGCGATTTCTTGATTTACAGTGGTTCAATTATAATTTTCATAAGTTTGGCTTGGTGGATTATGTGGTACGTGGGAAATATACAGGTCTCAGAAGACAGCTTTGGAGCAAGCTTAATGAAAAATAAACGGAGTTTTGTACAGTTGGCCAGAAAGTTGTCAGAGAGGCTTTCCAAAAAATCCAAACATGAACATGTAACCACAAAGTATGCAGAGGAAAACAAGGTTAAAGCTGTGACGCCTTCACCTGTTCACGTCGCCTCTCGAATAACCTGGGGGAAATCTTTCTGTTATCAGAATGGCGGCTATGACTCCAGCTTGGACTCCTTTCAGATGGAGAAGGAAAAACAGACACCAGATATACAGAACTTGGATGTGCAGACCCTCTCTAGGGGTAATGTTGAAAGGCTGTTCTGATTGTTCTCCGTAGCACTTTCTGATCCCAAGACTACCTTCAACACTGTACGCTTCACGGAATGGGACTACAGACAATTCAGGACATTAATCAGTACTGGTCTGGACGTTAGTTCTTGACAACAAAGACTCATCATTATGGGGTGAAATGACCCATAGTCCTAgggatataggcctactgtagataTTGCTCTAAATGCATGTTATATTGTTTtcgttttttatttatatatcaaTTATTAATATAATCTCCATGTGATGTTATGTGAACTTTTTATGTTATAGGATCAATATTATGTGGAAAGGCTATATTTTGTCATATAAACATATCGACATGTTAAGGTTCATCGTAGCCATTTTCTAGAATAGTCTCAGATGGAAATCCTAGAGGCCATTGTCTGAACGGCAGGTAATTGAACCCAGACTCTCCCCAAGCCAGACCCAGAAATGCAATCACCTGCATCTACAATTGTTTTACATAAAAACGGTAGTCAGGCAGGTTTGCCTGTGCCACAACAATTGCATTGCCAAAGCAGGCTGTAAACCCTCAACAAAACGTTGTGTGGCCTGGGGCACTGAGCTTGTTTTCACCTGCATGTTGACATTACATGGACATTTGGGCTATACTCTTTTAACTGTTCATTGAGTAGGCTGATTTTGTTTTTAATCATGTGCGCAAACTTCTAAAATGTATATTCTACCAGACTGCATTTTTTTTATGTTgtgatttattttatattttatttcttaaTATTCTTTAGATTTCAGTTGCCTTACCAACATATAGCTTTTGTCTAACATGACTGATAATGAGCGTGTGCATATCAAGTCATTGTACTCAGGGCGTTGCCTGTCTGTATGCTAATTATTACCTAATCCTGGCCTGTTGACTCTGCTTTGCGGTCCTTGGTTGAATAGGTGTTGCACAGAGGTAAACCAAACTCCCGCGACTGTCTGACTGGTCAAACCAGGTACTTAAAGGGTGAGGTTTTTCACTGCAGTTCCCCTTTCTGTCATGATGTAGGAAGCATGAAATAGTAAATAATTGTGGAATGCGTCCAGTAGGCCTTCTGCAGGCTAAATATAAACTGCTGATAGTCACTGAAATATATCTTCCCAACATACAGTATCTTTTCCCACACTGTTCATAATGTTAGATGTTATGCTGATGTCATAATATTCATATGAAATGCATTATTATTTTATACACAGAGGCATGGTGcattagatttttatttattttaaatatacATCCAATGATCTTGATAAGCATACACAATAAAAATAGTTATCTAATGAGATGATCCATTTCAAGCACTGTAATTACATTGCTGCAAGTCAGGGATTGCTAAGGAATGAGGTTGGACCATTTGGCCTTTAAGTTTTAATGGATCATTCAGAGTAGTACAACCTGTTGTGGTTGGATACCAGTTCTGCTGCTGTTTCCTACAATGGAAGAATTTGAAGGCGTGCTGAAAATCAGAAGAATGCGACTTGCGTTTTAAAAAGGTTGTGGCTGGAAAGGCCTCTCCTCATTCTTGTAAAGTCCTCAGCCGGCAGGAACCCAGACTGCGTCCATGTTCCTGCTATGGATACCTCTTCTATGGGTCGCTGTGTTTTCTTTCTCATCCTGGCTTTGATCTTTGATGTTGTCGGTCTGATCCTATTTTTCCTGGGGATCTTTGCTCCTCTGAGTTTCTGGGACTTCTTTGTGCTATCGGGGCCCCTGCTCATCTTCCTCAGCCTGGTCTTCTGGATATTCTGGTACCTGGGGAGTCTCACAGTGCCTTACGAAGAGCTCATCTTGCCAAAGTGACACCCAAACATGGTCAAAGGTGACCCACCTGACCAATGGCTGGTCCCCTGGACTGACAGCTTGACCCTCACAACTTTAAGGAGTTGACAGAATTCTGGATTCTGGGTGTTTGACCATGTTTCTCATTGGACTGTGAACCGGAGGACCTGGTTTTCTTTAAAGAAGGAACCTGTTGGACCCTGGAACAACTCCAGTTGGAAGTGAAGAATGGCATATGCACCCTATTCTACCCCTATGATGAAGAATGACAAGATGTCATGTACAGACAGCCAGGATTTCATCTGTGCTGGGTTGAAGTGGGACATGAACTCTAAAGCACTTGTGTCCATCCTTAAAGACTGCATCAGCACATATAACTCATTTTATAGTATGTGTAAAAGAATAAATATTTgttcaaataaatgtttatttttttaatgttttatccTCAAAAATAATATCAGAACGAGAGGCTTCAAAATGTGACAGACTCAACATTTTGAATGACTCATTGattcatgaagtgctttgagagactagtcaaggatcatatcacctccaccttactggccaccctagacccacttcagtttgcataccgccccaacatgtccacagacgacgcaatcatcATAACACTGCACAATGCCCTAtcacatctggacaaaaggaatacctatgtaagaatactgttcattgactacagctcagcattcaacaccatagtaccctccaagctcatcatcaagctggaggccctgggtctcaaccccgc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468092.2 True 3203 mRNA 0.41 3 47607673 47611494

Neighbor

gene id symbol gene type direction distance location
LOC110486597 LOC106606951 coding downstream 10378 47565257 ~ 47597295 (-)
LOC110486596 LOC106606950 coding downstream 84956 47508924 ~ 47522717 (-)
LOC110486594 LOC106601485 coding downstream 140938 47460436 ~ 47466735 (-)
LOC110486593 LOC106606954 coding downstream 173724 47432406 ~ 47433949 (-)
LOC110485195 LOC102192139 coding downstream 261739 46929363 ~ 47345934 (-)
LOC110487550 LOC106601487 coding upstream 787 47612281 ~ 47614372 (-)
LOC110486600 LOC106606953 coding upstream 27080 47638574 ~ 47707551 (-)
LOC110486601 rnz2 coding upstream 194730 47806224 ~ 47815064 (-)
LOC110486602 map2k4 coding upstream 206224 47817718 ~ 47830777 (-)
LOC110486606 LOC105899468 coding upstream 248704 47860198 ~ 47871854 (-)
G1181687 NA non-coding downstream 44110 47563071 ~ 47563563 (-)
G1181735 NA non-coding downstream 63938 47543492 ~ 47543735 (-)
G1181727 NA non-coding downstream 71899 47535544 ~ 47535774 (-)
G1181722 NA non-coding downstream 75798 47531640 ~ 47531875 (-)
G1181720 NA non-coding downstream 79130 47528278 ~ 47528543 (-)
G1181913 NA non-coding upstream 97226 47708720 ~ 47709006 (-)
G1181931 NA non-coding upstream 113803 47725297 ~ 47725589 (-)
G1181958 NA non-coding upstream 133511 47745005 ~ 47745348 (-)
G1181974 NA non-coding upstream 142748 47754242 ~ 47754535 (-)
G1181977 NA non-coding upstream 145146 47756640 ~ 47756867 (-)
LOC110486590 LOC105022923 other downstream 692655 46827752 ~ 46915018 (-)
LOC110486586 ubald2 other downstream 1072028 46510585 ~ 46535713 (-)
G1179621 LOC106607015 other downstream 2075011 45531858 ~ 45532662 (-)
LOC110486618 LOC106606909 other upstream 391537 47999581 ~ 48015951 (-)
G1183013 NA other upstream 413607 48025101 ~ 48025776 (-)
G1183126 NA other upstream 648030 48259524 ~ 48259989 (-)
G1183190 NA other upstream 750104 48361598 ~ 48365100 (-)
G1183192 NA other upstream 752562 48364056 ~ 48376966 (-)

Expression


Co-expression Network