LOC110486605 (tmem220)


Basic Information

Item Value
gene id LOC110486605
gene name tmem220
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 47830848 ~ 47832931 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558334.2
GCGATTTCTAGCATTAGGCTATGAATTACCATACAGTGAACAGTAAAATGTCAGTTTACGTACATTAAAGTAGTGTGTAATACTGTCCAGAATTGTTTATATTTTAAAGTAGCCAAATCAGTATTTCATGTAACAGTAACACATATGTACCTTTTAATCGTTTTCCTTAGTCATATATATTCAGAAAGCAGTTTCCAGGATAAAAAAGATAGAAAACAACGCGTCTAGGCGACTTTGCAATCGTGCCTATAAATGTAAAGTTGTCGAAACTTCATACCTCAAACCTCACTCTAAAAAATTAACGGATACGGATTCAACGCAAAGTTTATGGTTCAAAGTCCAGGAGGAAAATTTGCTGTCGAATTGCTGATTACTAGAAACTGGTTCTGTAGTTATAGACAGTGACAATGAACGAACCTAGTGAAGTTAAGTGCACAAAAACGAACGTTTCTCTGATCATTTGGAGAGTTTGCAATGTATGCATGTCATTGTTCTTTGCTCTAGCAAGTTATGTGCAGATTAACGATCCGGATGCAGTGTTATGGATGGTTGCCTATGCTATTCCAGCAAATCTGTGTTTATTGATTGCCATTAAACCACATGTAACAGAGACACTACTTTGGAGGAGAATTGCTAAACTTCATGTGCTTATTTCGACTGCTGTTGTTTCCATGATGGGATGGACTCTGTATAAAAAGCACATCACAAATATCTTCCAGCAAGAGGAGGGAAGGGAATTCTCTGGTCTCATGTTGATACTTGTCTGGCTTCTCCTGTGTCAACACTCTGGAAGttctattggaGCTCTCAGACTGTCTGTTGCTGTTGCCATCACAATCTTCCCCTTTGTGGCCTGGCTGTACTACTACATTAACAAGGAGCTGAGGACCAGCTGGCCCCCGCATTGTAAAACTGCACTGTAGATATCCATTCATTAAGATAGTCCAGTGACGAGTGAGCAACATATCTGCGGGATGGAACATTTACAAGAGGATATGACCTAGCTACAGTGGCAGCATGGAAATCATGAATGCATTGTTTAAAAAGACGCATGTAAAAAAGCACCCCTACTAAACCATACATCTAAATAAGTGACAATGTCATAAATTAGAATGTATATGATTGAtacattttccttttttttttattggaatCATACTTTTCTCTTTCtgaacatttttgttgttgtaggcaACCCATTGCACTTGTGGTGATATCTGGTGTAATCACAGTAAAATAAAGcaatttaataaaaaa
>XM_036941323.1
GCGATTTCTAGCATTAGGCTATGAATTACCATACAGTGAACAGTAAAATGTCAGTTTACGTACATTAAAGTAGTGTGTAATACTGTCCAGAATTGTTTATATTTTAAAGTAGCCAAATCAGTATTTCATGTAACAGTAACACATATGTACCTTTTAATCGTTTTCCTTAGTCATATATATTCAGAAAGCAGTTTCCAGGATAAAAAAGATAGAAAACAACGCGTCTAGGCGACTTTGCAATCGTGCCTATAAATGTAAAGTTGTCGAAACTTCATACCTCAAACCTCACTCTAAAAAATTAACGGATACGGATTCAACGCAAAGTTTATGGTTCAAAGTCCAGGAGGAAAATTTGCTGTCGAATTGCTGATTACTAGAAACTGGTTCTGTAGTTATAGACAGTGACAATGAACGAACCTAGTGAAGTTAAGTGCACAAAAACGAACGTTTCTCTGATCATTTGGAGAGTTTGCAATGTATGCATGTCATTGTTCTTTGCTCTAGCAAGTTATGTGCAGATTAACGATCCGGATGCAGTGTTATGGATGGTTGCCTATGCTATTCCAGCAAATCTGTGTTTATTGATTGCCATTAAACCACATGTAACAGACTGTTTTTCAGAGACACTACTTTGGAGGAGAATTGCTAAACTTCATGTGCTTATTTCGACTGCTGTTGTTTCCATGATGGGATGGACTCTGTATAAAAAGCACATCACAAATATCTTCCAGCAAGAGGAGGGAAGGGAATTCTCTGGTCTCATGTTGATACTTGTCTGGCTTCTCCTGTGTCAACACTCTGGAAGttctattggaGCTCTCAGACTGTCTGTTGCTGTTGCCATCACAATCTTCCCCTTTGTGGCCTGGCTGTACTACTACATTAACAAGGAGCTGAGGACCAGCTGGCCCCCGCATTGTAAAACTGCACTGTAGATATCCATTCATTAAGATAGTCCAGTGACGAGTGAGCAACATATCTGCGGGATGGAACATTTACAAGAGGATATGACCTAGCTACAGTGGCAGCATGGAAATCATGAATGCATTGTTTAAAAAGACGCATGTAAAAAAGCACCCCTACTAAACCATACATCTAAATAAGTGACAATGTCATAAATTAGAATGTATATGATTGAtacattttccttttttttttattggaatCATACTTTTCTCTTTCtgaacatttttgttgttgtaggcaACCCATTGCACTTGTGGTGATATCTGGTGTAATCACAGTAAAATAAAGcaatttaataaaaaata
>TU1347939
GGCATAGTTCGAGGAACACAAATCTAGGCTCAGTTAACCATACCGCCAGCGTTAACTTAATTAAAGGATTAACGATCCGGATGCAGTGTTATGGATGGTTGCCTATGCTATTCCAGCAAATCTGTGTTTATTGATTGCCATTAAACCACATGTAACAGAGACACTACTTTGGAGGAGAATTGCTAAACTTCATGTGCTTATTTCGACTGCTGTTGTTTCCATGATGGGATGGACTCTGTATAAAAAGCACATCACAAATATCTTCCAGCAAGAGGAGGGAAGGGAATTCTCTGGTCTCATGTTGATACTTGTCTGGCTTCTCCTGTGTCAACACTCTGGAAGGTAAGGACTTTCAATATAGATTTGGACCATATCCCTACATGCAATACTTTATTTAAAAAAGACTCAAACTCAGTACATCACTGATATCTGTACTGTCGTAACTCttttctattagttctattggaGCTCTCAGACTGTCTGTTGCTGTTGCCATCACAATCTTCCCCTTTGTGGCCTGGCTGTACTACTACATTAACAAGGAGCTGAGGACCAGCTGGCCCCCGCATTGTAAAACTGCACTGTAGATATCCATTCATTAAGATAGTCCAGTGACGAGTGAGCAACATATCTGCGGGATGGAACATTTACAAGAGGATATGACCTAGCTACAGTGGCAGCATGGAAATCATGAATGCATTGTTTAAAAAGACGCATGTAAAAAAGCACCCCTACTAAACCATACATCTAAATAAGTGACAATGTCATAAATTAGAATGTATATGATTGAta
>TU1347940
AATTGCTGATTACTAGAAACTGGTTCTGTAGTTATAGACAGTGACAATGAACGAACCTAGTGAAGTTAAGTGCACAAAAACGAACGTTTCTCTGATCATTTGGAGAGTTTGCAATGTATGCATGTCATTGTTCTTTGCTCTAGCAAGTTATGTGCAGGCAAGTGATTCCCTTATTTGATTGCATTGTTTGAGATACTTTGTatctatagcctactgtatttcGCGTTAGCTGTGGGTATATCTGCTTCTGTTGATCTCATGGATTTAGCAGAGTAATTTAATGAGTGAACATGGTGTATGTCTGTCTCTGAATATTTGGCCTAACTGAGTAAATCCCACGTTTTATCCTTTGTCTTTTTTATTGGCATAGATTAACGATCCGGATGCAGTGTTATGGATGGTTGCCTATGCTATTCCAGCAAATCTGTGTTTATTGATTGCCATTAAACCACATGTAACAGGTATGTGGGCATTATGGATGAATAGAGATCCATCAATGACCTTTGCCTATTTTTCCTATTAAATAACATTTCCATTTTAACATTTTTGGCCAGTGAAAAAGGCCATTGACTGTTTAGTATCTTGTAGCTAGCTATATCATGTGTAGTTAAAGCTAGAAATATATATGCATGAGCCTGCACTGCACCCTGAATGTTTAAACGCTTGAGAGACTGTTTTTCAGAGACACTACTTTGGAGGAGAATTGCTAAACTTCATGTGCTTATTTCGACTGCTGTTGTTTCCATGATGGGATGGACTCTGTATAAAAAGCACATCACAAATATCTTCCAGCAAGAGGAGGGAAGGGAATTCTCTGGTCTCATGTTGATACTTGTCTGGCTTCTCCTGTGTCAACACTCTGGAAGGTAAGGACTTTCAATATAGATTTGGACCATATCCCTACATGCAATACTTTATTTAAAAAAGACTCAAACTCAGTACATCACTGATATCTGTACTGTCGTAACTCttttctattagttctattggaGCTCTCAGACTGTCTGTTGCTGTTGCCATCACAATCTTCCCCTTTGTGGCCTGGCTGTACTACTACATTAACAAGGAGCTGAGGACCAGCTGGCCCCCGCATTGTAAAACTGCACTGTAGATATCCATTCATTAAGATAGTCCAGTGACGAGTGAGCAACATATCTGCGGGATGGAACATTTACAAGAGGATATGACCTAGCTACAGTGGCAGCATGGAAATCATGAATGCATTGTTTAAAAAGACGCATGTAAAAAAGCACCCCTACTAAACCATACATCTAAATAAGTGACAATGTCATAAATTAGAATGTATATGATTGAta

Function

symbol description
tmem220 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM220 (transmembrane protein 220).

NR:

description
transmembrane protein 220 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558334.2 False 1257 mRNA 0.38 6 47830921 47832929
XM_036941323.1 False 1271 mRNA 0.38 6 47830921 47832931
TU1347939 False 792 lncRNA 0.40 5 47830848 47832800
TU1347940 True 1316 lncRNA 0.38 3 47831282 47832800

Neighbor

gene id symbol gene type direction distance location
LOC110486595 paqrb coding upstream 324932 47482238 ~ 47505989 (+)
tmem100a LOC106606948 coding upstream 359716 47468012 ~ 47471205 (+)
LOC110486592 LOC106606958 coding upstream 420599 47403774 ~ 47410322 (+)
LOC110486591 LOC106606947 coding upstream 430161 47395330 ~ 47400760 (+)
LOC118938083 NA coding upstream 1007943 46818538 ~ 46822978 (+)
LOC110486603 LOC106606941 coding downstream 303 47833234 ~ 47836337 (+)
LOC110485199 NA coding downstream 14481 47847412 ~ 47858242 (+)
LOC110486607 LOC106601502 coding downstream 42475 47875406 ~ 47912448 (+)
LOC110486609 LOC106601450 coding downstream 94116 47927047 ~ 47932749 (+)
LOC110486612 LOC106601453 coding downstream 120017 47952948 ~ 47960452 (+)
G1181941 NA non-coding upstream 98534 47732130 ~ 47732387 (+)
G1181927 NA non-coding upstream 105748 47724824 ~ 47725173 (+)
G1181774 NA non-coding upstream 127754 47601655 ~ 47703167 (+)
G1181660 NA non-coding upstream 232685 47598070 ~ 47598236 (+)
G1181650 NA non-coding upstream 263805 47565031 ~ 47567116 (+)
G1182094 LOC106601460 non-coding downstream 166667 47999598 ~ 48003504 (+)
G1182107 NA non-coding downstream 192253 48025184 ~ 48025774 (+)
G1182110 NA non-coding downstream 199247 48032178 ~ 48032404 (+)
LOC110486620 LOC106601507 non-coding downstream 260077 48093008 ~ 48102030 (+)
G1182130 NA non-coding downstream 274845 48107776 ~ 48108141 (+)
G1181955 NA other upstream 87857 47742361 ~ 47743064 (+)
G1181636 NA other upstream 281373 47549279 ~ 47549548 (+)
G1181472 NA other upstream 456444 47374163 ~ 47374477 (+)
LOC110485193 LOC106601421 other upstream 1494643 46302751 ~ 46336386 (+)
G1182153 NA other downstream 286682 48119613 ~ 48122575 (+)
G1182354 LOC106601550 other downstream 723083 48556014 ~ 48561624 (+)
G1182541 NA other downstream 1113818 48946749 ~ 48947969 (+)
G1182555 NA other downstream 1145069 48978000 ~ 48981403 (+)
G1182595 NA other downstream 1230854 49063785 ~ 49065142 (+)

Expression


Co-expression Network